TCONS_00022651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022651
Unique NameTCONS_00022651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022651 ID=TCONS_00022651|Name=TCONS_00022651|organism=Clytia hemisphaerica|type=transcript|length=945bp
CATTATCTCCTTAATCTTGATACAACAGAAATAACGGTAAATTGGTCATA
ATATTTTTGTATGCCAAAAAGAAGTAGCTATTATACAATTGTAGCAATCA
CAGGACAATCACATGGGTCATTGATTATTATCTGTTCAAAAGGAAATTGC
TGGTTTGTTCTTTTTACCACTCTGCTCTGGCAACTTGCCAAAGGTCACAA
AAGTTATTATAGTTAGTATAGTTCTTGGCTGTGATTATCATGCATAGTCT
TTATATAGGTACCGCAATCATTAAAGTCTTTTTGCATGTATTCAATGGCA
TTTTAAAAATCCATCACCCCTCTCAGATGCGTGAAACAAATCATCGATGG
AAAGTGAAAAACGGACTCCAGATTTCGAGAAAGTAGAGAGGAGATCGTGG
AAATTTCCAGAATATCCAGAAATGAATGCTGATTTGAGTTGACAAATAAT
GAGAAAATCGATAACCGTTGTAAACATCTTGTGGTTGGTTTGTTATTCTA
CACAGTTGAAagacaaacaaaaagaaattaaaatgttttgtcATTCATCA
TGGTCGTACCATCTAAACAAACCAAAAATTCCGATAATAACCCGATTTTC
TAATTGAAACCTGTTTTTTTGCTGGAAAGGTTTTTCCAGAATATTAGAAA
TCAACGCCCAACACATTTCACATCAGACAAACCGTTTATCATCACCAGAT
TTGACTGACTCTTTTAGTTAATACCATTGACAAGTGGAAATAATAGGCTT
CGAAAGCTCGATGCTTGGAAAGCTCAATATAAATAGTTCTTCATTATTCT
AATGGTAGTCAAAGACAAAAGAATTAAGAAATCAAAGTTTGCAAATAACG
ATATACGCTATgtttaacaataaaatattacAGTCCTAACCGTCAAAGCA
TCTAACACCATACCGAACCAATCCAGTATAATCCCGATAATCTCG
Run BLAST on NCBI

transcript from alignment at sc0000429:51723..52667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022651 ID=TCONS_00022651|Name=TCONS_00022651|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at sc0000429:51723..52667 (Clytia hemisphaerica)
CGAGATTATCGGGATTATACTGGATTGGTTCGGTATGGTGTTAGATGCTT TGACGGTTAGGACTgtaatattttattgttaaacATAGCGTATATCGTTA TTTGCAAACTTTGATTTCTTAATTCTTTTGTCTTTGACTACCATTAGAAT AATGAAGAACTATTTATATTGAGCTTTCCAAGCATCGAGCTTTCGAAGCC TATTATTTCCACTTGTCAATGGTATTAACTAAAAGAGTCAGTCAAATCTG GTGATGATAAACGGTTTGTCTGATGTGAAATGTGTTGGGCGTTGATTTCT AATATTCTGGAAAAACCTTTCCAGCAAAAAAACAGGTTTCAATTAGAAAA TCGGGTTATTATCGGAATTTTTGGTTTGTTTAGATGGTACGACCATGATG AATgacaaaacattttaatttctttttgtttgtctTTCAACTGTGTAGAA TAACAAACCAACCACAAGATGTTTACAACGGTTATCGATTTTCTCATTAT TTGTCAACTCAAATCAGCATTCATTTCTGGATATTCTGGAAATTTCCACG ATCTCCTCTCTACTTTCTCGAAATCTGGAGTCCGTTTTTCACTTTCCATC GATGATTTGTTTCACGCATCTGAGAGGGGTGATGGATTTTTAAAATGCCA TTGAATACATGCAAAAAGACTTTAATGATTGCGGTACCTATATAAAGACT ATGCATGATAATCACAGCCAAGAACTATACTAACTATAATAACTTTTGTG ACCTTTGGCAAGTTGCCAGAGCAGAGTGGTAAAAAGAACAAACCAGCAAT TTCCTTTTGAACAGATAATAATCAATGACCCATGTGATTGTCCTGTGATT GCTACAATTGTATAATAGCTACTTCTTTTTGGCATACAAAAATATTATGA CCAATTTACCGTTATTTCTGTTGTATCAAGATTAAGGAGATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012720XLOC_012720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022651-exon-sc0000429-1491911889:51723..52667TCONS_00022651-exon-sc0000429-1491911889:51723..52667Clytia hemisphaericaexon
TCONS_00022651-exon-sc0000429-1510915933:51723..52667TCONS_00022651-exon-sc0000429-1510915933:51723..52667Clytia hemisphaericaexon
TCONS_00022651-exon-sc0000429-1575043694:51723..52667TCONS_00022651-exon-sc0000429-1575043694:51723..52667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000429supercontigsc0000429:51723..52667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0650051 0 0.309866 0.232074 0.203101 0.301887 0.0488366 0.128413 0.22441 0 0.0821145 0.0881215 0.144745 0.370896 0.409931 0.804306 0.0932117 0.34099 0.276346 0.401981 0.103508 0.461891 1.05754 0.21162 0.160506 0.490591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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