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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022657 ID=TCONS_00022657|Name=TCONS_00022657|organism=Clytia hemisphaerica|type=transcript|length=1785bp
CTTGAAAAGAACAGTATTGCCATAAATGATAATCTTTGCTCTGATCTAAC
AGCTATAAttggaaaacaagaaaaacttaCTCCATTTATGGAATTATTTT
GGCAAGAGCAAAAAACATTATTCCAAAGGTCTAAATCTGGAGTACGTTTC
CACCCTATGCTGATACGTTACTGTCTCTCGTTGGCTGCAAAATCACCTTC
TTGTTATAAAGAAATAAGAGATAGTGGAATTCTAAAACTGCCCAGTGAGC
GTACTTTACGGGACTACAGAAATGTCATCACCCCAAAAGTTGGCTTTAAC
CCGGCTGTAACAGATGAACTCATTTCCTTAACTAAAACCTACACAGCTGA
TCAGCGGTTTGTTACACTGTTGATTGATGAgatgaaaatcaaatcaaacc
tTGTCTTTCAAAGGAGTACAGGAGAACTGGTTGGATTTATGGACCTGGGA
GACCCTGATCTAAACTTTGCGTCAATCGACAAAGAACACCAAGATGATTT
GGCTTCATATGCATTGGTATTTATGCTACGTGGAATAACGTCCAACTTAA
AGTTTGGATTAGCATACTTTGGTACAGCTGGAGCCACTGGACCACAGATG
TTTTCCCTGTTCTGGGATGCAGTTGCCATTGTTGAGTGCTCGTGTAACCT
TAAACTTGTCGCAGTGACTGCTGATGGTGCATCACCCAATAGAAAACTGT
TTAATATGCACAAAGgcttcgtggacaTAGCAGAGGAGATATCAAGCAGC
GACCCTATCGATTTCAATGTAGACTCAATGAATGAAGCCACTCTCGAGAT
GTTGCCTGAAGAAACCTTTGATCAGTGGCTGGAAAAGATGATTGACGAGA
GTGTTGTATACAGGACAATCAACCTTTTTGCAAGGGATCGTTTTATTTAC
TTCTTCTCTGACACACCTCACTTGATCAAGACAGTGCGTAATTGTCTTTA
TTCTTCCGGTGACGAAAATTACACACGACAAATGTGGAAGGACGGAGATC
ACCTAATGTGGCAGCACATCAAAAACGCTTACACGAAGGATGCCGAAAAG
GAGATTAGGTATCTCAATAAATTAACACTAGAGCACATCAAACTGACTCC
TTACTCAAAAATGAGGGTCAACCTAGCAGCTCAGGTACTCAGCTCATCAA
TGAgcaaaatcttgagaaaagatTTTCCAGAATACAAGGAGACAGCCAAC
CTTTGTGAATATATGGATGCCTTTTTCGATTGTTTGAACGTTAGGAGTAT
GAATGAAGGCAAATTTGTGTTAAAGCCCAACCTTTTACCCTACCGTTGCC
CTGATGATTCGAGGTTCAAGTGGTTGATTGAACACTTTCttggatttttc
aagaattggGAGGCTTCAATTGAGAAAAGGCAGGGTGAATTCAGCAAAAC
GGAAAAGTCAAAAATGCTGATTTCCTGGCAAAGCTATGAAGGATTAAAAC
GCACATGCTATTCAGTTATTCATGTCACAAGATTTTTGCTAGAAGGCGGA
GTAAAGTGTGTTCTCACAGAGAGATTTTGTCAGGACACTTTGGAGCAGTA
TTTTGGCAACCACCGCCAACATTGCCGTAGGAGTGAAAACCCTGACATGC
TCATGTTTGGTTACAATGCTAATGGTTTACGTATTCAAAAAACTATTTCC
TGTCATACTGGAAATAATGCAGGTCGCAAAGATAACAAACGCTCCTGGGA
AGGAGTGTCTGATGAACCTTTGAAACGAAGAAAGTAACTCTCAGATATTA
TCTTACAACAATTATTTAAGTCTATGTAAAAACTG Run BLAST on NCBI protein sequence of TCONS_00022657-protein >TCONS_00022657-protein ID=TCONS_00022657-protein|Name=TCONS_00022657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
LEKNSIAINDNLCSDLTAIIGKQEKLTPFMELFWQEQKTLFQRSKSGVRF
HPMLIRYCLSLAAKSPSCYKEIRDSGILKLPSERTLRDYRNVITPKVGFN
PAVTDELISLTKTYTADQRFVTLLIDEMKIKSNLVFQRSTGELVGFMDLG
DPDLNFASIDKEHQDDLASYALVFMLRGITSNLKFGLAYFGTAGATGPQM
FSLFWDAVAIVECSCNLKLVAVTADGASPNRKLFNMHKGFVDIAEEISSS
DPIDFNVDSMNEATLEMLPEETFDQWLEKMIDESVVYRTINLFARDRFIY
FFSDTPHLIKTVRNCLYSSGDENYTRQMWKDGDHLMWQHIKNAYTKDAEK
EIRYLNKLTLEHIKLTPYSKMRVNLAAQVLSSSMSKILRKDFPEYKETAN
LCEYMDAFFDCLNVRSMNEGKFVLKPNLLPYRCPDDSRFKWLIEHFLGFF
KNWEASIEKRQGEFSKTEKSKMLISWQSYEGLKRTCYSVIHVTRFLLEGG
VKCVLTERFCQDTLEQYFGNHRQHCRRSENPDMLMFGYNANGLRIQKTIS
CHTGNNAGRKDNKRSWEGVSDEPLKRRK Run BLAST on NCBI transcript from alignment at sc0000430:88229..90218+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022657 ID=TCONS_00022657|Name=TCONS_00022657|organism=Clytia hemisphaerica|type=transcript|length=1990bp|location=Sequence derived from alignment at sc0000430:88229..90218+ (Clytia hemisphaerica)
CTTGAAAAGAACAGTATTGCCATAAATGATAATCTTTGCTCTGATCTAAC
AGCTATAAttggaaaacaagaaaaacttaCTCCATTTATGGAATTATTTT
GGCAAGAGCAAAAAACATTATTCCAAAGGTCTAAATCTGGAGTACGTTTC
CACCCTATGCTGATACGTTACTGTCTCTCGTTGGCTGCAAAATCACCTTC
TTGTTATAAAGAAATAAGAGATAGTGGAATTCTAAAACTGCCCAGTGAGC
GTACTTTACGGGACTACAGAAATGTCATCACCCCAAAAGTTGGCTTTAAC
CCGGCTGTAACAGATGAACTCATTTCCTTAACTAAAACCTACACAGCTGA
TCAGCGGTTTGTTACACTGTTGATTGATGAgatgaaaatcaaatcaaacc
tTGTCTTTCAAAGGAGTACAGGAGAACTGGTTGGATTTATGGACCTGGGA
GACCCTGATCTAAACTTTGCGTCAATCGACAAAGAACACCAAGATGATTT
GGCTTCATATGCATTGGTATTTATGCTACGTGGAATAACGTCCAACTTAA
AGTTTGGATTAGCATACTTTGGTACAGCTGGAGCCACTGGACCACAGATG
TTTTCCCTGTTCTGGGATGCAGTTGCCATTGTTGAGTGCTCGTGTAACCT
TAAACTTGTCGCAGTGACTGCTGATGGTGCATCACCCAATAGAAAACTGT
TTAATATGCACAAAGGTAAATATAGTTCTATAAAATAGTTTGGATATAAT
AACTTCCATTTCGAAGCTCTATCCAAGATGGGGTACAGTTCTGCTCTGGG
TTTACTATGATCAAGTACATAATTCTTTTGGAGTTTGGAAATtaacaaat
ttttcaagtttcagAATTCCAATCTTCATAGTTTTTCAATATTGTCTATG
TATATGTCCTTctttttaaggcttcgtggacaTAGCAGAGGAGATATCAA
GCAGCGACCCTATCGATTTCAATGTAGACTCAATGAATGAAGCCACTCTC
GAGATGTTGCCTGAAGAAACCTTTGATCAGTGGCTGGAAAAGATGATTGA
CGAGAGTGTTGTATACAGGACAATCAACCTTTTTGCAAGGGATCGTTTTA
TTTACTTCTTCTCTGACACACCTCACTTGATCAAGACAGTGCGTAATTGT
CTTTATTCTTCCGGTGACGAAAATTACACACGACAAATGTGGAAGGACGG
AGATCACCTAATGTGGCAGCACATCAAAAACGCTTACACGAAGGATGCCG
AAAAGGAGATTAGGTATCTCAATAAATTAACACTAGAGCACATCAAACTG
ACTCCTTACTCAAAAATGAGGGTCAACCTAGCAGCTCAGGTACTCAGCTC
ATCAATGAgcaaaatcttgagaaaagatTTTCCAGAATACAAGGAGACAG
CCAACCTTTGTGAATATATGGATGCCTTTTTCGATTGTTTGAACGTTAGG
AGTATGAATGAAGGCAAATTTGTGTTAAAGCCCAACCTTTTACCCTACCG
TTGCCCTGATGATTCGAGGTTCAAGTGGTTGATTGAACACTTTCttggat
ttttcaagaattggGAGGCTTCAATTGAGAAAAGGCAGGGTGAATTCAGC
AAAACGGAAAAGTCAAAAATGCTGATTTCCTGGCAAAGCTATGAAGGATT
AAAACGCACATGCTATTCAGTTATTCATGTCACAAGATTTTTGCTAGAAG
GCGGAGTAAAGTGTGTTCTCACAGAGAGATTTTGTCAGGACACTTTGGAG
CAGTATTTTGGCAACCACCGCCAACATTGCCGTAGGAGTGAAAACCCTGA
CATGCTCATGTTTGGTTACAATGCTAATGGTTTACGTATTCAAAAAACTA
TTTCCTGTCATACTGGAAATAATGCAGGTCGCAAAGATAACAAACGCTCC
TGGGAAGGAGTGTCTGATGAACCTTTGAAACGAAGAAAGTAACTCTCAGA
TATTATCTTACAACAATTATTTAAGTCTATGTAAAAACTG Coding sequence (CDS) from alignment at sc0000430:88229..90218+ >TCONS_00022657 ID=TCONS_00022657|Name=TCONS_00022657|organism=Clytia hemisphaerica|type=CDS|length=3474bp|location=Sequence derived from alignment at sc0000430:88229..90218+ (Clytia hemisphaerica)
CTTGAAAAGAACAGTATTGCCATAAATGATAATCTTTGCTCTGATCTAAC
AGCTATAAttggaaaacaagaaaaacttaCTCCATTTATGGAATTATTTT
GGCAAGAGCAAAAAACATTATTCCAAAGGTCTAAATCTGGAGTACGTTTC
CACCCTATGCTGATACGTTACTGTCTCTCGTTGGCTGCAAAATCACCTTC
TTGTTATAAAGAAATAAGAGATAGTGGAATTCTAAAACTGCCCAGTGAGC
GTACTTTACGGGACTACAGAAATGTCATCACCCCAAAAGTTGGCTTTAAC
CCGGCTGTAACAGATGAACTCATTTCCTTAACTAAAACCTACACAGCTGA
TCAGCGGTTTGTTACACTGTTGATTGATGAgatgaaaatcaaatcaaacc
tTGTCTTTCAAAGGAGTACAGGAGAACTGGTTGGATTTATGGACCTGGGA
GACCCTGATCTAAACTTTGCGTCAATCGACAAAGAACACCAAGATGATTT
GGCTTCATATGCATTGGTATTTATGCTACGTGGAATAACGTCCAACTTAA
AGTTTGGATTAGCATACTTTGGTACAGCTGGAGCCACTGGACCACAGATG
TTTTCCCTGTTCTGGGATGCAGTTGCCATTGTTGAGTGCTCGTGTAACCT
TAAACTTGTCGCAGTGACTGCTGATGGTGCATCACCCAATAGAAAACTGT
TTAATATGCACAAAGgcttcgtggacaTAGCAGAGGAGATATCAAGCAGC
GACCCTATCGATTTCAATGTAGACTCAATGAATGAAGCCACTCTCGAGAT
GTTGCCTGAAGAAACCTTTGATCAGTGGCTGGAAAAGATGATTGACGAGA
GTGTTGTATACAGGACAATCAACCTTTTTGCAAGGGATCGTTTTATTTAC
TTCTTCTCTGACACACCTCACTTGATCAAGACAGTGCGTAATTGTCTTTA
TTCTTCCGGTGACGAAAATTACACACGACAAATGTGGAAGGACGGAGATC
ACCTAATGTGGCAGCACATCAAAAACGCTTACACGAAGGATGCCGAAAAG
GAGATTAGGTATCTCAATAAATTAACACTAGAGCACATCAAACTGACTCC
TTACTCAAAAATGAGGGTCAACCTAGCAGCTCAGGTACTCAGCTCATCAA
TGAgcaaaatcttgagaaaagatTTTCCAGAATACAAGGAGACAGCCAAC
CTTTGTGAATATATGGATGCCTTTTTCGATTGTTTGAACGTTAGGAGTAT
GAATGAAGGCAAATTTGTGTTAAAGCCCAACCTTTTACCCTACCGTTGCC
CTGATGATTCGAGGTTCAAGTGGTTGATTGAACACTTTCttggatttttc
aagaattggGAGGCTTCAATTGAGAAAAGGCAGGGTGAATTCAGCAAAAC
GGAAAAGTCAAAAATGCTGATTTCCTGGCAAAGCTATGAAGGATTAAAAC
GCACATGCTATTCAGTTATTCATGTCACAAGATTTTTGCTAGAAGGCGGA
GTAAAGTGTGTTCTCACAGAGAGATTTTGTCAGGACACTTTGGAGCAGTA
TTTTGGCAACCACCGCCAACATTGCCGTAGGAGTGAAAACCCTGACATGC
TCATGTTTGGTTACAATGCTAATGGTTTACGTATTCAAAAAACTATTTCC
TGTCATACTGGAAATAATGCAGGTCGCAAAGATAACAAACGCTCCTGGGA
AGGAGTGTCTGATGAACCTTTGAAACGAAGAAAGTAACTTGAAAAGAACA
GTATTGCCATAAATGATAATCTTTGCTCTGATCTAACAGCTATAAttgga
aaacaagaaaaacttaCTCCATTTATGGAATTATTTTGGCAAGAGCAAAA
AACATTATTCCAAAGGTCTAAATCTGGAGTACGTTTCCACCCTATGCTGA
TACGTTACTGTCTCTCGTTGGCTGCAAAATCACCTTCTTGTTATAAAGAA
ATAAGAGATAGTGGAATTCTAAAACTGCCCAGTGAGCGTACTTTACGGGA
CTACAGAAATGTCATCACCCCAAAAGTTGGCTTTAACCCGGCTGTAACAG
ATGAACTCATTTCCTTAACTAAAACCTACACAGCTGATCAGCGGTTTGTT
ACACTGTTGATTGATGAgatgaaaatcaaatcaaacctTGTCTTTCAAAG
GAGTACAGGAGAACTGGTTGGATTTATGGACCTGGGAGACCCTGATCTAA
ACTTTGCGTCAATCGACAAAGAACACCAAGATGATTTGGCTTCATATGCA
TTGGTATTTATGCTACGTGGAATAACGTCCAACTTAAAGTTTGGATTAGC
ATACTTTGGTACAGCTGGAGCCACTGGACCACAGATGTTTTCCCTGTTCT
GGGATGCAGTTGCCATTGTTGAGTGCTCGTGTAACCTTAAACTTGTCGCA
GTGACTGCTGATGGTGCATCACCCAATAGAAAACTGTTTAATATGCACAA
AGgcttcgtggacaTAGCAGAGGAGATATCAAGCAGCGACCCTATCGATT
TCAATGTAGACTCAATGAATGAAGCCACTCTCGAGATGTTGCCTGAAGAA
ACCTTTGATCAGTGGCTGGAAAAGATGATTGACGAGAGTGTTGTATACAG
GACAATCAACCTTTTTGCAAGGGATCGTTTTATTTACTTCTTCTCTGACA
CACCTCACTTGATCAAGACAGTGCGTAATTGTCTTTATTCTTCCGGTGAC
GAAAATTACACACGACAAATGTGGAAGGACGGAGATCACCTAATGTGGCA
GCACATCAAAAACGCTTACACGAAGGATGCCGAAAAGGAGATTAGGTATC
TCAATAAATTAACACTAGAGCACATCAAACTGACTCCTTACTCAAAAATG
AGGGTCAACCTAGCAGCTCAGGTACTCAGCTCATCAATGAgcaaaatctt
gagaaaagatTTTCCAGAATACAAGGAGACAGCCAACCTTTGTGAATATA
TGGATGCCTTTTTCGATTGTTTGAACGTTAGGAGTATGAATGAAGGCAAA
TTTGTGTTAAAGCCCAACCTTTTACCCTACCGTTGCCCTGATGATTCGAG
GTTCAAGTGGTTGATTGAACACTTTCttggatttttcaagaattggGAGG
CTTCAATTGAGAAAAGGCAGGGTGAATTCAGCAAAACGGAAAAGTCAAAA
ATGCTGATTTCCTGGCAAAGCTATGAAGGATTAAAACGCACATGCTATTC
AGTTATTCATGTCACAAGATTTTTGCTAGAAGGCGGAGTAAAGTGTGTTC
TCACAGAGAGATTTTGTCAGGACACTTTGGAGCAGTATTTTGGCAACCAC
CGCCAACATTGCCGTAGGAGTGAAAACCCTGACATGCTCATGTTTGGTTA
CAATGCTAATGGTTTACGTATTCAAAAAACTATTTCCTGTCATACTGGAA
ATAATGCAGGTCGCAAAGATAACAAACGCTCCTGGGAAGGAGTGTCTGAT
GAACCTTTGAAACGAAGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022657-exon-sc0000430-1491911889:88229..88943 | TCONS_00022657-exon-sc0000430-1491911889:88229..88943 | Clytia hemisphaerica | exon |
| TCONS_00022657-exon-sc0000430-1510915933:88229..88943 | TCONS_00022657-exon-sc0000430-1510915933:88229..88943 | Clytia hemisphaerica | exon |
| TCONS_00022657-exon-sc0000430-1575043694:88229..88943 | TCONS_00022657-exon-sc0000430-1575043694:88229..88943 | Clytia hemisphaerica | exon |
| TCONS_00022657-exon-sc0000430-1491911889:89149..90218 | TCONS_00022657-exon-sc0000430-1491911889:89149..90218 | Clytia hemisphaerica | exon |
| TCONS_00022657-exon-sc0000430-1510915933:89149..90218 | TCONS_00022657-exon-sc0000430-1510915933:89149..90218 | Clytia hemisphaerica | exon |
| TCONS_00022657-exon-sc0000430-1575043694:89149..90218 | TCONS_00022657-exon-sc0000430-1575043694:89149..90218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:88229..90218 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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