TCONS_00022660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022660
Unique NameTCONS_00022660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022660 ID=TCONS_00022660|Name=TCONS_00022660|organism=Clytia hemisphaerica|type=transcript|length=1507bp
ATTTATATAGGACACCATTTATGGGCTCAAAGTATACACAAGAACAGGTT
AACCACCCACACAAAACTATCGGTAGTCTTTGACAACGTGCTGGGACCGC
TGagtatttgtaattttttacttttcaatttGACACTAAGATGCTTTCTA
AACATGAAAactgaaactttgaaaaatgaaaactaaaCGACTATCGAATC
TTTTCGAGATTACTCCACGTTACatttatgttatataatttctAAGTCTC
AATCTCAGGTTAAGAATACATTTTTAGAAAGCATTCTGTATTGGAAAAAT
GTGCAACAATCGGAGAGTCCAACTTAAGTTTGGAGCAGACGAGCTCAGTA
AATGGAAATTATGGAGAGCTGTCTTGGCGGAATTCGTTGGGACAATGTTA
TTTCTTTTATGCGTGACCACGGTTGCATTATTCAACGCTGGGAGTGGTTC
ATCATCTGTCAATGTCGAGGTTGGTATAGGAATCGGTTTGGGGATCGCTA
CATTATCATTTGCTTTCGGACATGTCAGTGGTGGTCATTTAAATCCTGCT
GTCACTTTTGGTATGATCATCGGTGGAAGAATCTCTTTTTTACGTGGATT
GTTTTATACATTGGCTCAAGTTGTTGGAGCTATTGCTGGGTCAGCCATCA
CATACGCTTGTACTTCAACTTTGGAACAAGGCATTGGCAAAACAAGATTG
GGACAGAATTTTGTCAAACGTGGTGACGAAATAGAAGCTATTGCATTGGA
AATgctcttcactttcattttggttttttttgttttctctgtTACCGATC
CGAAGAAGAAAGTTGAACCTTATGCACAATCCTTGGGTATTGGTGTTTGT
ATTTGGGTCTGCCATGTTTGCTTGATCCCATACACCAATTGTAGCATTAA
TCCAGCTCGATCCACAGGACCAGCTATAGTTATCAGCGATTGGAATGGAC
AAGATGAATTCTGGATCTTTTGGCTTGCACCAATGTTAGGAGGAGCATTG
GCAGCTGTTTtatacacgtttgttttttaCGTTGACGATTCTGATGAAGA
CAAATATGAAGTGAGACATTCCTATGCTATGGAGACCACTACAACAACTA
TCCGATCGTGAAAAGGAGATTACTGACTTGACATTATATTTTCAAAGTGG
GAAATTTCTTGATATCCCATGACAAAATATTTCATACGGAAAAGGCCGAA
AAATAACATGCCTTTGACTTTTACATGCTTTCAATAAAGAACCTTGGTAT
TTTGCTTTATATTTAGATCAAAGaactttaataaaatcttttatttaagT
TTCTTGTTTAGATTTACAATAGCTTACATTCATTTTCTGATTGATAGAAT
TTAGCACGGTACTCGACAAATGTAAATACACTGAAATTGTCAACATTTTG
TTTGATAGTCATTTATTTAGTTTTTATCTTCTAAACAAAActgtttatct
tttttaaaaccaatcagcttgcaatgaatttgatttacaaatttaggtac
taaaaag
Run BLAST on NCBI

protein sequence of TCONS_00022660-protein

>TCONS_00022660-protein ID=TCONS_00022660-protein|Name=TCONS_00022660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MCNNRRVQLKFGADELSKWKLWRAVLAEFVGTMLFLLCVTTVALFNAGSG
SSSVNVEVGIGIGLGIATLSFAFGHVSGGHLNPAVTFGMIIGGRISFLRG
LFYTLAQVVGAIAGSAITYACTSTLEQGIGKTRLGQNFVKRGDEIEAIAL
EMLFTFILVFFVFSVTDPKKKVEPYAQSLGIGVCIWVCHVCLIPYTNCSI
NPARSTGPAIVISDWNGQDEFWIFWLAPMLGGALAAVLYTFVFYVDDSDE
DKYEVRHSYAMETTTTTIRS
Run BLAST on NCBI

transcript from alignment at sc0000430:169710..177180+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022660 ID=TCONS_00022660|Name=TCONS_00022660|organism=Clytia hemisphaerica|type=transcript|length=7471bp|location=Sequence derived from alignment at sc0000430:169710..177180+ (Clytia hemisphaerica)
ATTTATATAGGACACCATTTATGGGCTCAAAGTATACACAAGAACAGGTT
AACCACCCACACAAAACTATCGGTAGTCTTTGACAACGTGCTGGGACCGC
TGagtatttgtaattttttacttttcaatttGACACTAAGATGCTTTCTA
AACATGAAAactgaaactttgaaaaatgaaaactaaaCGACTATCGAATC
TTTTCGAGATTACTCCACGTTACatttatgttatataatttctAAGTCTC
AATCTCAGGTTAAGAATACATTTTTAGAAAGCATTCTGTATTGGAAAAAT
GTGCAACAATCGGAGAGTCCAACTTAAGTTTGGAGCAGACGAGCTCAGTA
AATGGAAATTATGGAGAGCTGTCTTGGCGGAATTCGTTGGGACAATGTTA
TTTCTTTTATGCGTGACCACGGTTGCATTATTCAACGCTGGGAGTGGTTC
ATCATCTGTCAATGTCGAGGTAAACTTTACTTTATTGCTTTTTTTAAGtg
tacacatttttcaaaagaacaattttgtaagaacatcaGAGCAAGTACTC
ATTatggagcgatggccaagtggtcaaagacGTCAGCGTCTCAATGCAAG
GATTCCCGGTTCGAATCCCCTCTCATTCCAATATTTCGTTCAGTTCATAA
ATAaccgagccggctggccgtagacctgtgaaaacaatcgaaaaactGTC
CTAAACtcctagattactgggttaTTCACgtaaaaatatcgactctacTT
TAGTAAGTCAGATACATGCGAAGGATTGCagcgctcgttaaaagacaatg
aaattacaattacaaatctcttcctctgataaTTTCGATATGGTCTAAAA
CCACCTATGCCATCAGGCTAAAACCTGTAGAACCAATTATAAACAACCTG
GGAAACATGTGTTACAGGCCTGGCAGGACTTAACTCTACTGGGAAATTTC
AGTCCCGCTGGGAAATTGACTTCGACTTTTCCCAATCTGAAATTCAGTGG
AAAAATATTACACTAAATGTTTCTGACCCTTTTAGAATTTGGTTAGAAAC
CGGTGGAAAAAAACTCCACAACTGAGACAGGCGTGTGATATGTGcttcag
atttcaaaaattctcaAGAACACTGAATTTAAACTACTTTCAGCTTGTCG
ACGAAGGAATTTGAACATTTTTGTGAACAAGAAATACCaccttaaaaaaa
tatattgatagaagaaattttgtcgagaaaaaaagttatgaatAATGGGA
AAATTCgccaatacaccgtttaggagtgtcgactgcgcacgcgtcaatcc
aattttccattgttttgattttagcgatcacggaaaattcactctcctcc
gtaaaaaaacggtaggtagacatctggttctcataaggaaacatagcaga
aaaacggtaggtaaagaactccttttaatcataacttcttttcctcttga
tgaattttgtgaaattttcaggagagacttataaaattatcattgatatc
atgttcaaatatctaaatcattctctttaaagaagagacaaaaattcaca
atgtttacattcctctaacctttcacagtactaaagtgcgcatttttacc
NGAAtcgtatttttgcaattttagggtttgaaaGAAAACATCGAATCTTA
GAATCCTAATGCACACATTTTCGGCAGAGATTGAAATACAGAACATTCAA
ATAgttaaaaaagttcgaaaattggcTGAATGAANacaatgtttacattc
ctctaacctttcacagtactaaagtgcgcatttttacctaccatttttac
cgaacctctgcaatggagtaccgtgaaatggtgagactcctaaacggtgt
attttaCATAAGTTAATTTTGACGAATGATCTGTTATTTGGTAGGAGTTT
TAGCTGAGCCAGGAAGAAAAAACACGAATTTAGGAAAATTTGAATCAcgt
tgaaaaataataaaatttggagaaaattaATTTCGGCGAAAAATGGTAAN
ATGATACGcaatatatgtatataatagatttactttatgtttttgttact
agtacgaaagaaaaaatcggtttaaataaattcacaaacttCGAATGTCA
AATGTTGACCGTCAAAGTCCAGAAATATCGATTTAacgcgtagcatcatg
aaaaacattccaaacttattcaaattgaCACTcgcatgagctgcatttta
gtatcctttaatgagttacagcaaaagtttacttgggaaaattctctgtc
aggtttgaaaaatccagccatcgtccgtttagagcgataaatccaaaatt
aaccattttcacggcgtagctaccctgagtatcggaggttaagttttcaa
agaaaatagtaacctctgaagacaaatgatataaattttatcgcgcatgt
gtcaatctaatcaatgtagaaaaaatcaaagatgaagagcaaatattacc
atattaatgtctagcagactgtatcagtatgcagtttactatttacgaat
tccccagaaacctccaagtgtagttgaaatgagtttatttcgaaagaaat
ctttaacatgatccccaaatgtataacagtaattattaaacttttaatta
tggaaatgtcactttaattgaatcgaaataatagacagactttatgttat
gattctctatcactgactctttttacaaagcattgatgactttttgtaag
ttgtgttttcaacgacgggaataaaaatatcgactttgacgctcatccaa
gatcttggatggtcatcatggttacttttgtcttcgctgattgcgcgatg
aatagaatctcgattcgtcggcacagcgtaaatatatgattttgagctgt
gcttttcacggtacggCGTAGCATCTTGAAAAACATCCCAAACTTATtga
aatttacacatgagctgcattttagtatcctttaatgagttacagcataa
gtttacttgaaaaaattctctgtcaggtttgaaaaatccaaccaccgaCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNgtagcatcatgaaaaacattccaaacttattcaaatttaca
catgagctgcattttagtatcctttaataacTTAAAACATAAGTTTACGT
GGAAAAATTTTCTGTCAGGTTTGTTTAGAacgataaatccaaaattgacc
atcttcacgggtagcatcatgaaaaacattccaaacttattcgaatttac
acatgagctgcattttagtatccattaataacttacaacataagtttacg
tggaaaaattctctgtcaggtttgaaaaatccagccaccgaccgtgaaaa
ttgaccatcttcacgggtagcatcatgaaaaacattccaaacttattcaa
atttacacatgagctgcattttagtatccttaaatgacttacaacataag
tttacttgaaaaaagtctcTGTCGAGCTGGAAATATAAAACTCCAACTAA
AACATCCAAATGCTCGACTCCATCCAtcttgaaaacattaaaaaatactt
tgccaTGAAGAGGatgaaatttgactttactaccaattcaatccaatatA
AGAGTAGGTCAAACATCGTGCGGGTAagcggggcaaaaattctaaatcgg
ccgctggtttagcctggactactggacttgttaatttattgcgcgcacag
gctccGACAAAGCCACAATCTTTTcggtcagttgctttttaaaggcccac
ttgcgctgcgcggctgggccaaaaagaaactttaacaaataaacacgtaa
aataagaaccactactaacaaaaaggaaaatttcaacaagtttaaggtct
atctacactgtaataaaatattgaattattttaatttaattagcggggag
GGGgttcttaataagagcggggggggTGGACAATAAGCAGGAAGACGTCT
ATTCGAGAGACAAGAGTATTTCCCACgattttcccttttttacaGGTTGG
TATAGGAATCGGTTTGGGGATCGCTACATTATCATTTGCTTTCGGACATG
TCAGTGGTGGTCATTTAAATCCTGCTGTCACTTTTGGTATGATCATCGGT
GGAAGAATCTCTTTTTTACGTGGATTGTTTTATACATTGGCTCAAGTTGT
TGGAGGTTAGTAACTTCTTTTATCAcggttgactctctctaatttgattt
tcaagagGTAGATTATCTTCttcgaattatggaaagattcgaattacagg
gaAAATTTAATGCCATTCCTCAGATAAAGTGACCGGTTCTATAATACAAC
AAAAGGATTCGAATTACATAGAtgctcgaattagagagagttggtTGTAT
CTTTGTACCAACAACAACGAAAAAGCTCCGAATTTGCACTGATTTTACTA
TTTCCAGATTTTTGATAGGAAAATGAGGTAATCTTGACTTAAACACATAA
AACTGGGCCAAAACGTCCAAAGAACCTTCGTAGAACGTTAGAAAAATCTT
GGCATACATCATCTAGGAGTAAATCATTCTAAATATGACACACTGAGATG
AAGCTGAACTTCACCAGATAAAATGATTTTGGTACATAGTATAACCAACA
AGTGCTATTGGTTACTGACTGACCTTGACAGGACGGTGATATACCGCTGG
AATtcgaaaaattcattttgtcaGTCTGACAAAAGTTCGATAAAATATGG
ACCTTAACAGACAAGATTTGGACCCTGTCTgacgaaatttcaattttttt
tctgaaacccATCCTAAAAAGTTGTGTGACTAACCAGAAGTCGGTCCTAC
CATATAATATACTGTCCGAATCTAATGAACATACGAATCTGTCAGATATT
TTCAGAGCTTGAATAATTGGCCAAACAGTGGTACGTCCCTTATCTCCATT
CTGCTTTAGGTTTGCCCTATTTTTCAAACACTGCTTTGTTCAAAAGGGTT
TCTTTAAACAACGAGCGATACAACTCAACAAGTTGATTGAGAATTCAAAT
TAGCACTCTTTGAACATTTCCTTAACTTTTTCATCTCTTCATTCATTATA
CAGCTATTGCTGGGTCAGCCATCACATACGCTTGTACTTCAACTTTGGAA
CAAGGCATTGGCAAAACAAGATTGGGACAGAATTTTGTCAAACGTGGTGA
CGAAATAGAAGCTATTGCATTGGAAATgctcttcactttcattttggttt
tttttgttttctctgtTACCGATCCGAAGAAGAAAGTTGAACCTTATGCA
CAATCCTTGGGTATTGGTGTTTGTATTTGGGTCTGCCATGTTTGCTTGGT
AAGGAGTTATTCCATATTCCTTCACAGACCCAGATCAAAATACTATTGAT
ACTCCAGAGTTTTCAGCTTCATTTAAGAAACTAACTCAAGTTTAcatccc
tttctcacagacccggtgggattttttgaGCCAAAGGGAGTAAAAATtac
ggactaaaactcgattGGGGTTGTTATTACTATTTTTTTTCATGGCTTAG
AtaaatttccattgttttcgagccggaaaattaaatttggcgatgGAAAA
agtagcacaatattttgcagtgaggatttgctttactgattattttcagt
ggagacaaaaattagagtataattctCCAATGGGGAcggtattttggcca
atttctccagtgggaaggggtcctagtgggtctgtgagaagggggtgtaa
tttACTGCGGAGCTCTTAAAATTAACATATCAACGCTGGTTActgatttt
tcctttttttcataGATCCCATACACCAATTGTAGCATTAATCCAGCTCG
ATCCACAGGACCAGCTATAGTTATCAGCGATTGGAATGGACAAGATGAAT
TCTGGGTAAGTTAACAATGCATTCTGGCCCTTTTGAATAGAATAACTTGA
TATATACTAGCGAGTACCTCACCAAAATCAGaatttttcattccgtttct
tggTGAGCTTCATCAAAtctgggctccaaacattcgaagaAGTTGCATAG
TTGAACGGACATCACTGCATAGAAAATAGCCGTGACATCTATTAAAGGCT
AAATACATACTAAAAACTATTAAATATAAAGCCCGTTGACAAGACTCCGC
TATAATTGAGAAAAGTCACATCAAGTTAACCCTTTATGTGTCACGgccat
tttttctaatttttttaaagaaaatcgctagttcaaactataaaggctta
tatctctggatctagaaggagttaggtccaattttagaggtttttGAGTC
Acttgttgaccaaaaatggtcaaaaaacggtcaaaattttaaaaaagtgg
atttttgtcaattttttgcatttctttttgactttttggcttaaaatctt
gcTGGAAAGACTCGGAAAGATTTTGCCGACTCTGAAAGATTTTGCCGATA
ATTCCTTTTTGACCATATACGTCGGCAAGTGTCTATTGTACGAAGAATCG
ACTTTAACATTACATTAAGATTAAAGTTACAATATTTCCTTTTAAAGAGC
GGCGCCTCTAAAATAGAAATTAGTAAAAAGCGCTGCACCGCAAAATACGG
TACTTAATAGAATTTCATTGGTTTACTAGCCATGATTACTCTTCAAATTA
TACGTAACAGTTTTACATATAAAAAGGTACTAAAACTTAAACTAAAAAGT
TAATAAAATTTTGGTTCCTTTTCTTTACACCAAAAGGTCTTTTGAATTGG
ACAGTTCACATATTAAAAGGAGTGCTGCACTTTAAAAAGCACCGCACCCA
AAATACTGAAAATTTGAAGAGCGCTGCATCACATAGTCGCTTGAATGTAA
GTAACTGTAAATTCATGTTTATTTTCAGATCTTTTGGCTTGCACCAATGT
TAGGAGGAGCATTGGCAGCTGTTTtatacacgtttgttttttaCGTTGAC
GATTCTGATGAAGACAAATATGAAGTGAGACATTCCTATGCTATGGAGAC
CACTACAACAACTATCCGATCGTGAAAAGGAGATTACTGACTTGACATTA
TATTTTCAAAGTGGGAAATTTCTTGATATCCCATGACAAAATATTTCATA
CGGAAAAGGCCGAAAAATAACATGCCTTTGACTTTTACATGCTTTCAATA
AAGAACCTTGGTATTTTGCTTTATATTTAGATCAAAGaactttaataaaa
tcttttatttaagTTTCTTGTTTAGATTTACAATAGCTTACATTCATTTT
CTGATTGATAGAATTTAGCACGGTACTCGACAAATGTAAATACACTGAAA
TTGTCAACATTTTGTTTGATAGTCATTTATTTAGTTTTTATCTTCTAAAC
AAAActgtttatcttttttaaaaccaatcagcttgcaatgaatttgattt
acaaatttaggtactaaaaag

Coding sequence (CDS) from alignment at sc0000430:169710..177180+

>TCONS_00022660 ID=TCONS_00022660|Name=TCONS_00022660|organism=Clytia hemisphaerica|type=CDS|length=4065bp|location=Sequence derived from alignment at sc0000430:169710..177180+ (Clytia hemisphaerica)
ATGTGCAACAATCGGAGAGTCCAACTTAAGTTTGGAGCAGACGAGCTCAG
TAAATGGAAATTATGGAGAGCTGTCTTGGCGGAATTCGTTGGGACAATGT
TATTTCTTTTATGCGTGACCACGGTTGCATTATTCAACGCTGGGAGTGGT
TCATCATCTGTCAATGTCGAGGTTGGTATAGGAATCGGTTTGGGGATCGC
TACATTATCATTTGCTTTCGGACATGTCAGTGGTGGTCATTTAAATCCTG
CTGTCACTTTTGGTATGATCATCGGTGGAAGAATCTCTTTTTTACGTGGA
TTGTTTTATACATTGGCTCAAGTTGTTGGAGCTATTGCTGGGTCAGCCAT
CACATACGCTTGTACTTCAACTTTGGAACAAGGCATTGGCAAAACAAGAT
TGGGACAGAATTTTGTCAAACGTGGTGACGAAATAGAAGCTATTGCATTG
GAAATgctcttcactttcattttggttttttttgttttctctgtTACCGA
TCCGAAGAAGAAAGTTGAACCTTATGCACAATCCTTGGGTATTGGTGTTT
GTATTTGGGTCTGCCATGTTTGCTTGATCCCATACACCAATTGTAGCATT
AATCCAGCTCGATCCACAGGACCAGCTATAGTTATCAGCGATTGGAATGG
ACAAGATGAATTCTGGATCTTTTGGCTTGCACCAATGTTAGGAGGAGCAT
TGGCAGCTGTTTtatacacgtttgttttttaCGTTGACGATTCTGATGAA
GACAAATATGAAGTGAGACATTCCTATGCTATGGAGACCACTACAACAAC
TATCCGATCGTGAATGTGCAACAATCGGAGAGTCCAACTTAAGTTTGGAG
CAGACGAGCTCAGTAAATGGAAATTATGGAGAGCTGTCTTGGCGGAATTC
GTTGGGACAATGTTATTTCTTTTATGCGTGACCACGGTTGCATTATTCAA
CGCTGGGAGTGGTTCATCATCTGTCAATGTCGAGGTTGGTATAGGAATCG
GTTTGGGGATCGCTACATTATCATTTGCTTTCGGACATGTCAGTGGTGGT
CATTTAAATCCTGCTGTCACTTTTGGTATGATCATCGGTGGAAGAATCTC
TTTTTTACGTGGATTGTTTTATACATTGGCTCAAGTTGTTGGAGCTATTG
CTGGGTCAGCCATCACATACGCTTGTACTTCAACTTTGGAACAAGGCATT
GGCAAAACAAGATTGGGACAGAATTTTGTCAAACGTGGTGACGAAATAGA
AGCTATTGCATTGGAAATgctcttcactttcattttggttttttttgttt
tctctgtTACCGATCCGAAGAAGAAAGTTGAACCTTATGCACAATCCTTG
GGTATTGGTGTTTGTATTTGGGTCTGCCATGTTTGCTTGATCCCATACAC
CAATTGTAGCATTAATCCAGCTCGATCCACAGGACCAGCTATAGTTATCA
GCGATTGGAATGGACAAGATGAATTCTGGATCTTTTGGCTTGCACCAATG
TTAGGAGGAGCATTGGCAGCTGTTTtatacacgtttgttttttaCGTTGA
CGATTCTGATGAAGACAAATATGAAGTGAGACATTCCTATGCTATGGAGA
CCACTACAACAACTATCCGATCGTGAATGTGCAACAATCGGAGAGTCCAA
CTTAAGTTTGGAGCAGACGAGCTCAGTAAATGGAAATTATGGAGAGCTGT
CTTGGCGGAATTCGTTGGGACAATGTTATTTCTTTTATGCGTGACCACGG
TTGCATTATTCAACGCTGGGAGTGGTTCATCATCTGTCAATGTCGAGGTT
GGTATAGGAATCGGTTTGGGGATCGCTACATTATCATTTGCTTTCGGACA
TGTCAGTGGTGGTCATTTAAATCCTGCTGTCACTTTTGGTATGATCATCG
GTGGAAGAATCTCTTTTTTACGTGGATTGTTTTATACATTGGCTCAAGTT
GTTGGAGCTATTGCTGGGTCAGCCATCACATACGCTTGTACTTCAACTTT
GGAACAAGGCATTGGCAAAACAAGATTGGGACAGAATTTTGTCAAACGTG
GTGACGAAATAGAAGCTATTGCATTGGAAATgctcttcactttcattttg
gttttttttgttttctctgtTACCGATCCGAAGAAGAAAGTTGAACCTTA
TGCACAATCCTTGGGTATTGGTGTTTGTATTTGGGTCTGCCATGTTTGCT
TGATCCCATACACCAATTGTAGCATTAATCCAGCTCGATCCACAGGACCA
GCTATAGTTATCAGCGATTGGAATGGACAAGATGAATTCTGGATCTTTTG
GCTTGCACCAATGTTAGGAGGAGCATTGGCAGCTGTTTtatacacgtttg
ttttttaCGTTGACGATTCTGATGAAGACAAATATGAAGTGAGACATTCC
TATGCTATGGAGACCACTACAACAACTATCCGATCGTGAATGTGCAACAA
TCGGAGAGTCCAACTTAAGTTTGGAGCAGACGAGCTCAGTAAATGGAAAT
TATGGAGAGCTGTCTTGGCGGAATTCGTTGGGACAATGTTATTTCTTTTA
TGCGTGACCACGGTTGCATTATTCAACGCTGGGAGTGGTTCATCATCTGT
CAATGTCGAGGTTGGTATAGGAATCGGTTTGGGGATCGCTACATTATCAT
TTGCTTTCGGACATGTCAGTGGTGGTCATTTAAATCCTGCTGTCACTTTT
GGTATGATCATCGGTGGAAGAATCTCTTTTTTACGTGGATTGTTTTATAC
ATTGGCTCAAGTTGTTGGAGCTATTGCTGGGTCAGCCATCACATACGCTT
GTACTTCAACTTTGGAACAAGGCATTGGCAAAACAAGATTGGGACAGAAT
TTTGTCAAACGTGGTGACGAAATAGAAGCTATTGCATTGGAAATgctctt
cactttcattttggttttttttgttttctctgtTACCGATCCGAAGAAGA
AAGTTGAACCTTATGCACAATCCTTGGGTATTGGTGTTTGTATTTGGGTC
TGCCATGTTTGCTTGATCCCATACACCAATTGTAGCATTAATCCAGCTCG
ATCCACAGGACCAGCTATAGTTATCAGCGATTGGAATGGACAAGATGAAT
TCTGGATCTTTTGGCTTGCACCAATGTTAGGAGGAGCATTGGCAGCTGTT
TtatacacgtttgttttttaCGTTGACGATTCTGATGAAGACAAATATGA
AGTGAGACATTCCTATGCTATGGAGACCACTACAACAACTATCCGATCGT
GAATGTGCAACAATCGGAGAGTCCAACTTAAGTTTGGAGCAGACGAGCTC
AGTAAATGGAAATTATGGAGAGCTGTCTTGGCGGAATTCGTTGGGACAAT
GTTATTTCTTTTATGCGTGACCACGGTTGCATTATTCAACGCTGGGAGTG
GTTCATCATCTGTCAATGTCGAGGTTGGTATAGGAATCGGTTTGGGGATC
GCTACATTATCATTTGCTTTCGGACATGTCAGTGGTGGTCATTTAAATCC
TGCTGTCACTTTTGGTATGATCATCGGTGGAAGAATCTCTTTTTTACGTG
GATTGTTTTATACATTGGCTCAAGTTGTTGGAGCTATTGCTGGGTCAGCC
ATCACATACGCTTGTACTTCAACTTTGGAACAAGGCATTGGCAAAACAAG
ATTGGGACAGAATTTTGTCAAACGTGGTGACGAAATAGAAGCTATTGCAT
TGGAAATgctcttcactttcattttggttttttttgttttctctgtTACC
GATCCGAAGAAGAAAGTTGAACCTTATGCACAATCCTTGGGTATTGGTGT
TTGTATTTGGGTCTGCCATGTTTGCTTGATCCCATACACCAATTGTAGCA
TTAATCCAGCTCGATCCACAGGACCAGCTATAGTTATCAGCGATTGGAAT
GGACAAGATGAATTCTGGATCTTTTGGCTTGCACCAATGTTAGGAGGAGC
ATTGGCAGCTGTTTtatacacgtttgttttttaCGTTGACGATTCTGATG
AAGACAAATATGAAGTGAGACATTCCTATGCTATGGAGACCACTACAACA
ACTATCCGATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012729XLOC_012729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022660-exon-sc0000430-1491911889:169710..170178TCONS_00022660-exon-sc0000430-1491911889:169710..170178Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1510915933:169710..170178TCONS_00022660-exon-sc0000430-1510915933:169710..170178Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1575043694:169710..170178TCONS_00022660-exon-sc0000430-1575043694:169710..170178Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1491911889:173805..173964TCONS_00022660-exon-sc0000430-1491911889:173805..173964Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1510915933:173805..173964TCONS_00022660-exon-sc0000430-1510915933:173805..173964Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1575043694:173805..173964TCONS_00022660-exon-sc0000430-1575043694:173805..173964Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1491911889:174863..175107TCONS_00022660-exon-sc0000430-1491911889:174863..175107Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1510915933:174863..175107TCONS_00022660-exon-sc0000430-1510915933:174863..175107Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1575043694:174863..175107TCONS_00022660-exon-sc0000430-1575043694:174863..175107Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1491911889:175575..175664TCONS_00022660-exon-sc0000430-1491911889:175575..175664Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1510915933:175575..175664TCONS_00022660-exon-sc0000430-1510915933:175575..175664Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1575043694:175575..175664TCONS_00022660-exon-sc0000430-1575043694:175575..175664Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1491911889:176638..177180TCONS_00022660-exon-sc0000430-1491911889:176638..177180Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1510915933:176638..177180TCONS_00022660-exon-sc0000430-1510915933:176638..177180Clytia hemisphaericaexon
TCONS_00022660-exon-sc0000430-1575043694:176638..177180TCONS_00022660-exon-sc0000430-1575043694:176638..177180Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022660-proteinTCONS_00022660-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:169710..177180 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.55511	6.07702	6.09664	6.57015	2.43273	1.5146	1.01907	0.888246	0.806144	1.02707	1.19074	1.20142	21.8319	28.336	0.388009	0.266492	9.43851	11.1463	60.2604	53.6633	8.21871	7.38599	14.2279	16.6392	11.797	9.79523	83.3895	87.1157	0.455056	0.649082
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000425MIP
IPR023271Aquaporin-like
IPR022357MIP_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00022660 vs. Swiss-Prot (Human)
Match: AQP1 (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.120e-40
Identity = 97/257 (37.74%), Postives = 143/257 (55.64%), Query Frame = 2 
Query:  335 ADELSKWKLWRAVLAEFVGTMLFLLCVTTVAL-----FNAXXXXXXXXXXXXXXXXLGIATLSFAFGHVSGGHLNPAVTFGMIIGGRISFLRGLFYTLAQVVGAIAGSAITYACTSTLEQGIGKTRLGQNFVKRG-DEIEAIALEMLFTFILVFFVFSVTDPKKKVEPYAQSLGIGVCIWVCHVCLIPYTNCSINPARSTGPAIVISDWNGQDEFWIFWLAPMLGGALAAVLYTFVFYVDDSD-EDKYEVRHSYAME 1084
            A E  K   WRAV+AEF+ T LF+      AL           +   NV+V +  GL IATL+ + GH+SG HLNPAVT G+++  +IS  R L Y +AQ VGAI  +AI    TS+L        LG+N +  G +  + + +E++ T  LV  V + TD +++    +  L IG+ + + H+  I YT C INPARS G A++  +++     WIFW+ P +GGALA ++Y F+     SD  D+ +V  S  +E
Sbjct:    2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLT----GNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNH---WIFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKVWTSGQVE 251
The following BLAST results are available for this feature:
BLAST of TCONS_00022660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AQP11.120e-4037.74Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
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