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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022687 ID=TCONS_00022687|Name=TCONS_00022687|organism=Clytia hemisphaerica|type=transcript|length=2324bp
ctaaaaatatatttcaatcatAAGCCTAGCTCAGTAAATATTTCTTATCA
TATACTACATGGATTATTCCCATTTATAATACATAAACGTATTGTGTATA
AGTAATGTATAAAAGTAAATaactttatcaaataaattctaaatttctaa
aataCCAATCTACAAAGATTTTAAAACTCTTCTAATAATAGCCTTTTCCA
GGAAACAAAAACCTGTTGTCGATGTTGACCATCATTTTCTTGTCTGAAGC
AGTGAAATAGCTAACATTGAGTGGAAATTTTCTGCTTAAGAGTAAGAGAA
GAAATGCCAGTTTACCAATTTTCGTTCAAATCAGTTAACTTGAAACTCCA
AACTCAGACCAATGTCAGTTTACTTATACTTGGTCAGGAAAtgcaatcaa
aaaatttgaattttattttatcttaatCACACATCAATATCGGTGGGCAA
GTTATTTTTGTTTAGCTGGGTGACGTCACATTAACATTCCACTGCGACTA
ATCAAAAATTGATGGGTAAAAAAACATCACAACCTCAAAATTCAAACCTG
AATGCAATTGACATTGCTCTGACCTTCAAAATTCTAAGTTGCGGAGATTC
TACCGTATTTACAGACATGTCAGCAAAAACCTCCCTTTATTATTAGAAAG
ACTTCCTTGATGTCTTTCTTTAAATTCTCTGATGGCCAAGTTGTCAAGGT
GTGAGGCAGTGGTTCACATTTCGAACCTTGGATTCTTCCAATGTTTAATT
CAGTGGACACCgtgaaaataattgaaagaTTGCCTATAAATCCTAGATTA
CTGAGCCATCCATatgtaaaatatcgactctatctgtTAAAGAGACACGA
AGATTCTTTCATGATCAAAATGACGTGTCAAAtgaaaaaactataaaaaa
tgTCAGATGCATAAATAATAACAAATTTCTATTAAATCTCTATTTTCtat
tatataaatttttttctacaaaatatTTGCAAGTTGAACCTTGCATGCTC
ATTTGCGTAGAGCTCTGATTTATatacaaaatgataaaataacaCCAAAA
GTCTATTCTAATAAGCTACCTTTTAGAGGCATTAACCTTAGTTAGACCTT
AGCAAGAACTTAATGGGAAAAATAGCTTTATAGCTGAAATCAAGTAGCTT
TACAGTAAAATGCTTCtgtaccaaaaatgaagtttctagACTTAAAGAAT
AAGAAGTTCaacttatttttcttcttcttttcctaGAAATTACAGTGCTT
TTATATCTATCTTTTCAgtggtatataatatgttagAATTGAAGTATCTG
TAGAAAAACTCTCAAAGAGTCAAAAACTGGAATGCATTTTCTGGAATGCA
TTTTTGAATGCATTATAGGGGCCATATTTTTTGGTCCAAGCTCCTCTAGA
TAGAAGATGGTCAAGATAGAGATTTTTATTGTAGTTGCTATGCTATCAAA
ATTGCACTTgctaaaatttttaatattttagaccCGGACTTTAGTTTGCA
AGACATTTTTATAGAAAGGATCATTTTTCAGCTTCGAAAACGACTTGGAG
TTCCTTGATGTGATTTAGCTGCTTCCCTTCTTCGATCAAGTGGATACGGT
ACATCATTTAGCCATTCACTCACAAAACTTGCATGGTCACCCCCTCTCTG
ATCCTGTAATGATCGAACTTCCATTGACAGACGCTCCAACTCTTGTTTCA
TGGCTTTGGTCTTTTCTTCAATGGATTCTAATTTCTCCAGAGCTAGAATT
TTGTGGAGCTCTTTCTCATCTTCCTTTGCATAGGAAGACCAAATGCTGAC
TATACTATAAGCACCATATATCAAAATAACACAAGCAATCAGATATGGGT
GTGtccataaaaataataaaaagtgcCATATCAAACTTGAAAACACTAAC
ATCCATTTCAAACAGAAAAATGGACCAGCAATATTGTATATCAAAAAAGT
TGAGGAAATCCACATCAACAGGTAAAGAGTGGAAAAACGCCCAATAATAA
ATGAAATGgcaatgacttgaaaaaatacCATAATGGAAATGGCTTCATAG
CTTGTCTTGTTTAGAAATTCGTTGATTTgtttaaaattaaagaaaaagtc
attttctaCAAGTTTAATAATGCCATCATCGGCCATAGTTATgcattatt
tctttcttttgattttttatatataaatcTAAACAATGttaaaaaaggaa
taaaaaataatcataacCCAAACCATACAAAAAACCACCCTTTCCATGGT
TTCAGCGGTTGAGCTGATGCTGGTTACTAACAAAATcaattcatttttca
attaGCTATTGCAGCTGTATAAGG Run BLAST on NCBI protein sequence of TCONS_00022687-protein >TCONS_00022687-protein ID=TCONS_00022687-protein|Name=TCONS_00022687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MADDGIIKLVENDFFFNFKQINEFLNKTSYEAISIMVFFQVIAISFIIGR
FSTLYLLMWISSTFLIYNIAGPFFCLKWMLVFSSLIWHFLLFLWTHPYLI
ACVILIYGAYSIVSIWSSYAKEDEKELHKILALEKLESIEEKTKAMKQEL
ERLSMEVRSLQDQRGGDHASFVSEWLNDVPYPLDRRREAAKSHQGTPSRF
RS Run BLAST on NCBI transcript from alignment at sc0000430:208346..210669 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022687 ID=TCONS_00022687|Name=TCONS_00022687|organism=Clytia hemisphaerica|type=transcript|length=2324bp|location=Sequence derived from alignment at sc0000430:208346..210669 (Clytia hemisphaerica)
CCTTATACAGCTGCAATAGCtaattgaaaaatgaattgATTTTGTTAGTA
ACCAGCATCAGCTCAACCGCTGAAACCATGGAAAGGGTGGTTTTTTGTAT
GGTTTGGgttatgattattttttattccttttttaaCATTGTTTAgattt
atatataaaaaatcaaaagaaagaaataatgcATAACTATGGCCGATGAT
GGCATTATTAAACTTGtagaaaatgactttttctttaattttaaacAAAT
CAACGAATTTCTAAACAAGACAAGCTATGAAGCCATTTCCATTATGgtat
tttttcaagtcattgcCATTTCATTTATTATTGGGCGTTTTTCCACTCTT
TACCTGTTGATGTGGATTTCCTCAACTTTTTTGATATACAATATTGCTGG
TCCATTTTTCTGTTTGAAATGGATGTTAGTGTTTTCAAGTTTGATATGgc
actttttattatttttatggaCACACCCATATCTGATTGCTTGTGTTATT
TTGATATATGGTGCTTATAGTATAGTCAGCATTTGGTCTTCCTATGCAAA
GGAAGATGAGAAAGAGCTCCACAAAATTCTAGCTCTGGAGAAATTAGAAT
CCATTGAAGAAAAGACCAAAGCCATGAAACAAGAGTTGGAGCGTCTGTCA
ATGGAAGTTCGATCATTACAGGATCAGAGAGGGGGTGACCATGCAAGTTT
TGTGAGTGAATGGCTAAATGATGTACCGTATCCACTTGATCGAAGAAGGG
AAGCAGCTAAATCACATCAAGGAACTCCAAGTCGTTTTCGAAGCTGAAAA
ATGATCCTTTCTATAAAAATGTCTTGCAAACTAAAGTCCGggtctaaaat
attaaaaattttagcAAGTGCAATTTTGATAGCATAGCAACTACAATAAA
AATCTCTATCTTGACCATCTTCTATCTAGAGGAGCTTGGACCAAAAAATA
TGGCCCCTATAATGCATTCAAAAATGCATTCCAGAAAATGCATTCCAGTT
TTTGACTCTTTGAGAGTTTTTCTACAGATACTTCAATTctaacatattat
ataccacTGAAAAGATAGATATAAAAGCACTGTAATTTCtaggaaaagaa
gaagaaaaataagttGAACTTCTTATTCTTTAAGTctagaaacttcattt
ttggtacaGAAGCATTTTACTGTAAAGCTACTTGATTTCAGCTATAAAGC
TATTTTTCCCATTAAGTTCTTGCTAAGGTCTAACTAAGGTTAATGCCTCT
AAAAGGTAGCTTATTAGAATAGACTTTTGGtgttattttatcattttgta
tATAAATCAGAGCTCTACGCAAATGAGCATGCAAGGTTCAACTTGCAAat
attttgtagaaaaaaatttatataataGAAAATAGAGATTTAATAGAAAT
TTGTTATTATTTATGCATCTGAcattttttatagttttttcaTTTGACAC
GTCATTTTGATCATGAAAGAATCTTCGTGTCTCTTTAacagatagagtcg
atattttacatATGGATGGCTCAGTAATCTAGGATTTATAGGCAAtcttt
caattattttcacGGTGTCCACTGAATTAAACATTGGAAGAATCCAAGGT
TCGAAATGTGAACCACTGCCTCACACCTTGACAACTTGGCCATCAGAGAA
TTTAAAGAAAGACATCAAGGAAGTCTTTCTAATAATAAAGGGAGGTTTTT
GCTGACATGTCTGTAAATACGGTAGAATCTCCGCAACTTAGAATTTTGAA
GGTCAGAGCAATGTCAATTGCATTCAGGTTTGAATTTTGAGGTTGTGATG
TTTTTTTACCCATCAATTTTTGATTAGTCGCAGTGGAATGTTAATGTGAC
GTCACCCAGCTAAACAAAAATAACTTGCCCACCGATATTGATGTGTGatt
aagataaaataaaattcaaattttttgattgcaTTTCCTGACCAAGTATA
AGTAAACTGACATTGGTCTGAGTTTGGAGTTTCAAGTTAACTGATTTGAA
CGAAAATTGGTAAACTGGCATTTCTTCTCTTACTCTTAAGCAGAAAATTT
CCACTCAATGTTAGCTATTTCACTGCTTCAGACAAGAAAATGATGGTCAA
CATCGACAACAGGTTTTTGTTTCCTGGAAAAGGCTATTATTAGAAGAGTT
TTAAAATCTTTGTAGATTGGtattttagaaatttagaatttatttgataa
agttATTTACTTTTATACATTACTTATACACAATACGTTTATGTATTATA
AATGGGAATAATCCATGTAGTATATGATAAGAAATATTTACTGAGCTAGG
CTTatgattgaaatatatttttag Coding sequence (CDS) from alignment at sc0000430:208346..210669 >TCONS_00022687 ID=TCONS_00022687|Name=TCONS_00022687|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000430:208346..210669 (Clytia hemisphaerica)
ATGGCCGATGATGGCATTATTAAACTTGtagaaaatgactttttctttaa
ttttaaacAAATCAACGAATTTCTAAACAAGACAAGCTATGAAGCCATTT
CCATTATGgtattttttcaagtcattgcCATTTCATTTATTATTGGGCGT
TTTTCCACTCTTTACCTGTTGATGTGGATTTCCTCAACTTTTTTGATATA
CAATATTGCTGGTCCATTTTTCTGTTTGAAATGGATGTTAGTGTTTTCAA
GTTTGATATGgcactttttattatttttatggaCACACCCATATCTGATT
GCTTGTGTTATTTTGATATATGGTGCTTATAGTATAGTCAGCATTTGGTC
TTCCTATGCAAAGGAAGATGAGAAAGAGCTCCACAAAATTCTAGCTCTGG
AGAAATTAGAATCCATTGAAGAAAAGACCAAAGCCATGAAACAAGAGTTG
GAGCGTCTGTCAATGGAAGTTCGATCATTACAGGATCAGAGAGGGGGTGA
CCATGCAAGTTTTGTGAGTGAATGGCTAAATGATGTACCGTATCCACTTG
ATCGAAGAAGGGAAGCAGCTAAATCACATCAAGGAACTCCAAGTCGTTTT
CGAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022687-exon-sc0000430-1491911889:208346..210669 | TCONS_00022687-exon-sc0000430-1491911889:208346..210669 | Clytia hemisphaerica | exon |
| TCONS_00022687-exon-sc0000430-1510915933:208346..210669 | TCONS_00022687-exon-sc0000430-1510915933:208346..210669 | Clytia hemisphaerica | exon |
| TCONS_00022687-exon-sc0000430-1575043694:208346..210669 | TCONS_00022687-exon-sc0000430-1575043694:208346..210669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:208346..210669 . |
Blast
The following BLAST results are available for this feature:
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