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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022699 ID=TCONS_00022699|Name=TCONS_00022699|organism=Clytia hemisphaerica|type=transcript|length=2823bp
ttcaaacaatagaaaaaattattatagcAAGAAAATATTACAATGTGTAT
CTCTGGCGAAATTCATGACAAATATCCACCCTTGATTGAATTTATCATAT
GGATGATACTACAAATCATGTGTATTGGTAACCATTTTGGAGTATGGGCA
CTAATCCCACCTTACGTCATTGATATTACGTCACCTACTTATATGAACGT
TACGCGATTAACAAACGTCTCCCTTTTGAATGATACGTCAGCTTGTGATA
TGCTGTCCGGAAATACATCATTTAAAAATTGTACATTGTCCGAAATTGAT
AAAGATAATGAAGCTCAAtggaaaaatattgaattatttcgTCATATGTT
ACTCATCTTCTGCATTGTTGCCATAGTTATATTTTTGGTTCATGCTGTAT
TATTAATACCTAACATTATACAAGGGTTCCGTGTTAAAGAACCCGCCTTA
TTAAAAGAAACAGGAAAcgcttattttcaaaatgtgctTAAGATTCATtg
ctttttcttgattttggaaACAATTGTTTTTGATATCCCAGCTGGATGTT
TGAGTATGGAGTTGCTATCACAGATCTGGGAAGGTCCTTTAACTCAAGAA
GAGAATATGAGAGTCAGTAAAATGATTTTAACACTATCTCTGGTGGGTCT
GGCTTTTATTGCATTATATAAAGgAATGATGCCACTTTACGTTTGGCTTG
GTAATCCGTTTTGTTTTCCTTGTATACCGCTAAGGATTCTGGTCGTTTTC
CCTGGTGGTCTTATTGCTATGGTGATGACCTTTGGACCTATCATGGGAGT
CACTAAAAATCGACTGCTACAATTTGCACCTCCAGTGATGCAAGTTGAAA
TTGGAGATATGGCGAACACCTTCTTTTCAATTGGGATGATTTTCTGGGGT
TGTTTTGGCATCNTGCAAGTTGAAATTGGAGATATGGCGAACACCTTCTT
TTCAATTGGGATGATTTTCTGGGGCTGTTTTGGCATTATTGGCGGCATGA
CAATGATGTGCTGGTATAAATTTTGTAGACCTGGTGCCGAGGGTGAAGTA
TGTGATGTTTGCTGTGACGCATAGATTCGTTTGGCATCCTAGAACCGAGC
TCTCTAATTTTGTGACAATGGTATGATGGTATAAACTTTGTGGACTTAAT
ACCGAGAGTGAAGCATGTGACATTTACACCTTAGAACAAAATCTTGTTAG
AACCCAGGTCCCTAATTTTGTTTTAGAAGTGTTACAACAAAACTAAAGAA
AACCgtcatattgataaaaaaagtgcaaTATTTGCTGATGTGACGCTAAA
ACTTGGGCGCTATTGAACTCCAATAAAATGGACAAGATAAGGAGTTGGTA
TATGAATTTTACGGGTCTCGTGCCTAAGTTGAGGTATACAATATTGTTGT
GGTAGAAATGTTCTCCACAGTTTTGTATATGCTTATTGGACAACCTAGAA
CCCAACTCCCAACATGACTCTGATGTTATCTGTTTTGACAACAGAGCTTA
CTAGCTATCTTAGACTCTTTAACACTTCCAGAATAAAGATATATGTATGT
ATCTTTAAAGGTCCTGGACCCTAGAGGTCTTCAGTCGATAAAAATAGTAG
AatgttgaaaaacaaaaacattttcaaggTTGAAAGATGGATACATAAGC
TTTACGCATTGATTTCAACATCGAAAAAAGCAACTCAACTGGCACTACAA
CACACACTACAATACAACAGTTGAAATTTTTGAATCACTTAATACCAATC
AGAATTAAaagaacaattattttgaagatttcatgagaaaatcttttttc
atcattatttattgtgtataaaagaaaatttatgagaaatattttgaata
ttatgTATATGTATATGTTCATGAACACCCCGCCAAGTATATTAATGTCC
AATATCATTCCAACTTTGTATCATTCCCAATTGGCAAATAGCGTCATTTC
AACATCCATCTAGCGTCCATTCAACGTCGGATGACGTTAAAATGGTGTGT
TTCAGCAACTCAATCAAACTACTCTTTCAACTATATACAAACTTCATAAA
TAATATCTCGTTAAATTTTGTGTGTGACTTACCATTGATATTCTCAAAAA
TACAGACTTTATAAAGACACTTGATTACTGTATTGAATTTGAAAGTTGTT
AGCTTTTTTAGCTATTCCAACATATTAGGGGAGAGCAGGTGCTGTTAaat
cttattttgaaaatatcaagGATAATAATGCATTTTTTCGTATATTTTTA
CtgtacttgaaattcattggCAGTTATGAATAACTACGATGGCAATCATT
TTCACTGCTACCAACTGATTCTGTGCTTATTACAATAACATTTTGATATC
CAATACTCCTGCTTCAACAAACACACAACATTTTCAACGTCAAGCCGACG
TTATATGGATGGTATGAATGTAGTCGCTTTGGCGTCGTGTGCCAGCTTAG
GAATATTGGATTTACAGttttttttgggcaaaagtTAAATGACTGAATTC
TATCGTGAAGACTATGACTATCTATGACACCCAGCTGGTACAGTACGTCG
TTTTAATGTTCATCTGATGTCACAAGGGCGTTAAAAAGACGTTTTCTCGA
CGATTTGTGTCAGCTGAATGAATTTGATTGTCATTATCACTTTCCTCTTT
CAGCTCAAGTCAATTTTGATTGACTTAGTGCTTCATCAAAATGCCTTTAA
GGCACTTAACAAGGaaatttcattcaattttttttataaatgggGTTAGG
CATGGGTtaacttaaatatttttttaaagaaaacaaaaagttttaagaaa
atgaaaaaaatcgcAACCAAAAT Run BLAST on NCBI transcript from alignment at sc0000431:85844..90343+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022699 ID=TCONS_00022699|Name=TCONS_00022699|organism=Clytia hemisphaerica|type=transcript|length=4500bp|location=Sequence derived from alignment at sc0000431:85844..90343+ (Clytia hemisphaerica)
ttcaaacaatagaaaaaattattatagcAAGAAAATATTACAATGTGTAT
CTCTGGCGAAATTCATGACAAATATCCACCCTTGATTGAATTTATCATAT
GGATGATACTACAAATCATGTGTATTGGTAACCATTTTGGAGTATGGGCA
CTAATCCCACCTTACGTCATTGATATTACGTCACCTACTTATATGAACGT
TACGCGATTAACAAACGTCTCCCTTTTGAATGATACGTCAGCTTGTGATA
TGCTGTCCGGAAATACATCATTTAAAAATTGTACATTGTCCGAAATTGAT
AAAGATAATGAAGCTCAAtggaaaaatattgaattatttcgTCATATGTT
ACTCATCTTCTGCATTGTTGCCATAGTTATATTTTTGGTTCATGCTGTAT
TATTAATACCTAACATTATACAAGGGTTCCGTGTTAAAGAACCCGCCTTA
TTAAAAGAAACAGGAAAcgcttattttcaaaatgtgctTAAGATTCATtg
ctttttcttgattttggaaACAATTGTTTTTGATATCCCAGCTGGATGTT
TGAGTATGGAGTTGCTATCACAGATCTGGGAAGGTCCTTTAACTCAAGAA
GAGAATATGAGAGTCAGTAAAATGATTTTAACACTATCTCTGGTGGGTCT
GGCTTTTATTGCATTATATAAAGGTAAGAATAAGAATTgacacaacgttg
tttaaacgttcGTATTTTGTGCCAAGCGAATTCTGCAGTGTGAAGATGAG
CCAGGTCATAGGTTCAATCCATGGTCGGGTAAtaccaaaaattccaaaaa
tttggtGTTTTCTGCTTAAGCAGTTAAAGAGaatgatcaagggtaagtga
cAATCCAGGAAGGAAAGTATTCGGTGCTCCCTCACACGTCCGTAGAGTAG
TTGTCGAAAGAGGCACACACTACTAGGAAATGGGTGGACGattctaaggg
ggggggggggtcagaaatTTTTTCTAACCCTTAGAGGAGGTGTCTCAAGA
AAATTCATGTCAAAAGTATTTTAAATGGTTAGGCGGGGGAGGAGGGGGGT
TGGCTTGAAATTTGCTTGAGGATATCAATGGGGTGCAAAgttattttgga
ttttttgaaaatatccttTACCCCACCCTAATGAATCCTTTCTGACCACT
TCCTTATCCGTATCGAAAACTCACATTCGCCTTTTAAATTACTTAATAAC
TCTCTATTTAGACTCACCAAATTCTGGTGCGCATAAATCTTTAGTTTGAA
TCCAAATTTAGTCGTTTACTAATCAGACTTTGAATAATAAATTATGGCAA
CTGCGCTATTCCCGGGTTTGCATCCAtgttacaatttttttatgaaaagg
tccCACTAAATACGAGGCGAGCTTGTCTAAAGAGAATGGGCTGaactaaa
tttttatttttaatttttattaggAATGATGCCACTTTACGTTTGGCTTG
GTAATCCGTTTTGTTTTCCTTGTATACCGCTAAGGATTCTGGTCGTTTTC
CCTGGTGGTCTTATTGCTATGGTGATGACCTTTGGACCTATCATGGGAGT
CACTAAAAATCGACTGCTACAATTTGCACCTCCAGGTATTATTAAGCTAT
AGATCTTAtaagagtttttgtttttttttctaaaaaagcattgtttcggg
agtattacaattaaaatctcttaggaattcctcgagggaattctattgta
atatctccaaaacaatcccacaatgcatcgctgttttggaaaaatcaaaa
actccaataAGGTCTATTGTAAATGTGACGTAATGTCAAATCACATTGCA
AGGGTGTACATCGCGAATTACCAGAATTTATGTTACGTTAACACGCTCTG
GTTCCGTTCCACTCCGAGACGAAATGAAGACATTCCATTGGTTAAATTTA
AGTTTTACGTCAATTCTAACCAATAGATTGGCTTCATTTAGTTTCCgagt
gaacatggtctaaactAAAAGAGTTTTATTCTACCCaaagagaatatttt
gaaagcaaatcttttttaaatccgTCATTTACACACCTGTATCACCTAAA
ATTATAAATACCCGACCGTTTATtatctaaaatcaatttttctttactaA
CACGTGCAAATGGATTCTTACATCTCACAACTCACATAGCTTTTGTAAAA
CAACTTTTGGGAAAGATAATAGAGATACTAGTACTGAAGTTTCGAACACT
ACAGAAAGTTCGGTGATATGTTTTTTACTAGGAAGGATCTCTAGaaattt
tttagaatcaacctaCATTTTAGGGGTCATACACTGTAAAGTCAATTTTT
CTGACTAACACGTGCAAAAGAATCTTTACTCACAAATTGATCAAATCGTT
TCATTGCGGGGAAGATTCTGATATGGAAGATAATGAAGAAAACAAAAtag
gaactttattttttttccacaAAAAATGATTATCTCGGGGATTTAATATA
ATTATAAAGAAAGTCCTGGGAGAAGAATTTTCCCAATTAAAATGTCTTAT
CTCCTATTTCAGTGATGCAAGTTGAAATTGGAGATATGGCGAACACCTTC
TTTTCAATTGGGATGATTTTCTGGGGTTGTTTTGGCATCNTGCAAGTTGA
AATTGGAGATATGGCGAACACCTTCTTTTCAATTGGGATGATTTTCTGGG
GCTGTTTTGGCATTATTGGCGGCATGACAATGATGTGCTGGTATAAATTT
TGTAGACCTGGTGCCGAGGGTGAAGTATGTGATGTTTGCTGTGACGCATA
GATTCGTTTGGCATCCTAGAACCGAGCTCTCTAATTTTGTGACAATGGTA
TGATGGTATAAACTTTGTGGACTTAATACCGAGAGTGAAGCATGTGACAT
TTACACCTTAGAACAAAATCTTGTTAGAACCCAGGTCCCTAATTTTGTTT
TAGAAGTGTTACAACAAAACTAAAGAAAACCgtcatattgataaaaaaag
tgcaaTATTTGCTGATGTGACGCTAAAACTTGGGCGCTATTGAACTCCAA
TAAAATGGACAAGATAAGGAGTTGGTATATGAATTTTACGGGTCTCGTGC
CTAAGTTGAGGTATACAATATTGTTGTGGTAGAAATGTTCTCCACAGTTT
TGTATATGCTTATTGGACAACCTAGAACCCAACTCCCAACATGACTCTGA
TGTTATCTGTTTTGACAACAGAGCTTACTAGCTATCTTAGACTCTTTAAC
ACTTCCAGAATAAAGATATATGTATGTATCTTTAAAGGTCCTGGACCCTA
GAGGTCTTCAGTCGATAAAAATAGTAGAatgttgaaaaacaaaaacattt
tcaaggTTGAAAGATGGATACATAAGCTTTACGCATTGATTTCAACATCG
AAAAAAGCAACTCAACTGGCACTACAACACACACTACAATACAACAGTTG
AAATTTTTGAATCACTTAATACCAATCAGAATTAAaagaacaattatttt
gaagatttcatgagaaaatcttttttcatcattatttattgtgtataaaa
gaaaatttatgagaaatattttgaatattatgTATATGTATATGTTCATG
AACACCCCGCCAAGTATATTAATGTCCAATATCATTCCAACTTTGTATCA
TTCCCAATTGGCAAATAGCGTCATTTCAACATCCATCTAGCGTCCATTCA
ACGTCGGATGACGTTAAAATGGTGTGTTTCAGCAACTCAATCAAACTACT
CTTTCAACTATATACAAACTTCATAAATAATATCTCGTTAAATTTTGTGT
GTGACTTACCATTGATATTCTCAAAAATACAGACTTTATAAAGACACTTG
ATTACTGTATTGAATTTGAAAGTTGTTAGCTTTTTTAGCTATTCCAACAT
ATTAGGGGAGAGCAGGTGCTGTTAaatcttattttgaaaatatcaagGAT
AATAATGCATTTTTTCGTATATTTTTACtgtacttgaaattcattggCAG
TTATGAATAACTACGATGGCAATCATTTTCACTGCTACCAACTGATTCTG
TGCTTATTACAATAACATTTTGATATCCAATACTCCTGCTTCAACAAACA
CACAACATTTTCAACGTCAAGCCGACGTTATATGGATGGTATGAATGTAG
TCGCTTTGGCGTCGTGTGCCAGCTTAGGAATATTGGATTTACAGtttttt
ttgggcaaaagtTAAATGACTGAATTCTATCGTGAAGACTATGACTATCT
ATGACACCCAGCTGGTACAGTACGTCGTTTTAATGTTCATCTGATGTCAC
AAGGGCGTTAAAAAGACGTTTTCTCGACGATTTGTGTCAGCTGAATGAAT
TTGATTGTCATTATCACTTTCCTCTTTCAGCTCAAGTCAATTTTGATTGA
CTTAGTGCTTCATCAAAATGCCTTTAAGGCACTTAACAAGGaaatttcat
tcaattttttttataaatgggGTTAGGCATGGGTtaacttaaatattttt
ttaaagaaaacaaaaagttttaagaaaatgaaaaaaatcgcAACCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022699-exon-sc0000431-1491911889:85844..86516 | TCONS_00022699-exon-sc0000431-1491911889:85844..86516 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1510915933:85844..86516 | TCONS_00022699-exon-sc0000431-1510915933:85844..86516 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1575043694:85844..86516 | TCONS_00022699-exon-sc0000431-1575043694:85844..86516 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1491911889:87267..87428 | TCONS_00022699-exon-sc0000431-1491911889:87267..87428 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1510915933:87267..87428 | TCONS_00022699-exon-sc0000431-1510915933:87267..87428 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1575043694:87267..87428 | TCONS_00022699-exon-sc0000431-1575043694:87267..87428 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1491911889:88356..90343 | TCONS_00022699-exon-sc0000431-1491911889:88356..90343 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1510915933:88356..90343 | TCONS_00022699-exon-sc0000431-1510915933:88356..90343 | Clytia hemisphaerica | exon |
| TCONS_00022699-exon-sc0000431-1575043694:88356..90343 | TCONS_00022699-exon-sc0000431-1575043694:88356..90343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000431 | supercontig | sc0000431:85844..90343 + |
Blast
The following BLAST results are available for this feature:
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