TCONS_00022717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022717
Unique NameTCONS_00022717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022717 ID=TCONS_00022717|Name=TCONS_00022717|organism=Clytia hemisphaerica|type=transcript|length=695bp
ATGTATTTTGAACGATCAAATTTACTTCCCTGAAAAAGGACGATGTTTCC
GTGACGACCCTGACCCAAACTGCCCGAACGTTGGATGTGCTGGCAAAGCT
GATGGTGACCATCCATTCTCAAATGACTTGCATGATTGCCGACAATTTTA
TACTTGTCTTAACGAACAACCAACTTTAAATACTTGCCCTACTGATGCTC
AAAACCGGTCTTCATACTATGATggttttttcgaaaagaaatgTGTTAAC
CTTCCACAAGATCTGGTGCGAAGAACTTGCAACTACATTCAAGGGTGGTG
GTCTACCTGGGCTCCTGCTCAAACTTGTTCACGAAACGGAGCTAACCAAT
GTGTCAGATCACGAACTCGATCATGCAACAATCCCTCGCCAAAGAACGAT
CCTTTCCCTTGTGGTTATTCTGTAGCTAACTTGAGAGATGAGTCTGACAC
TATTGCTTGTCTGGAAAGCGAATGTGCCCAGCCATGTCAAGGAATCACAT
GTCCAGCATCATCGACTTGTGTCAATGTTGGAGTAAGCTACCAATGTCAA
TGTAACGCTGGCTATCAACTCATTAGTGGAAACCAATTAACCGTCGTCTG
TCAGGATATTAACGAATGTGCCAATTCTCCATACCCATGTCTGTCAACAC
AACGTTGTACTAACATACAGGGATCATATCAATGCTTGTCTGGTA
Run BLAST on NCBI

transcript from alignment at sc0000431:102653..108770-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022717 ID=TCONS_00022717|Name=TCONS_00022717|organism=Clytia hemisphaerica|type=transcript|length=6118bp|location=Sequence derived from alignment at sc0000431:102653..108770- (Clytia hemisphaerica)
ATGTATTTTGAACGATCAAATTTACTTCCCTGAAAAAGGACGATGTTTCC
GTGACGACCCTGACCCAAACTGCCCGAGTAAGTATTCGGTACATTGCCTG
AAAATAATAAATGGTCTCAGAGACTTGATCCGATATAGAGCTTCCATCCA
TATTTAATAAAAATCCATCGAATATATGACTTTTCGTCTTTTTTTTTGAC
GTCAAATTTTTTTCTGGCTGGTTGTGCTCGTCGAAATGCATCAAAATGGC
GAAAACTAAAGAAATACCAAAAAAAATCGAAATTCAANNNNNNNNNNNNN
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AGTCGAATGTTTCACATAAAACACTCCCATAATCGAACGTTCGAATGTTT
TTCTTTTTTAATGATTTTCTTAATTACTTTGAGTCATAAAGAGTTGTTAA
TTATTCATCAATGGCTATTTTTGCCTACAGGTATATAATGATGTATATTA
TTATATTAGAATAATCCATTGATTCTTTTTTTACCATAGACGTTGGATGT
GCTGGCAAAGCTGATGGTGACCATCCATTCTCAAATGACTTGCATGATTG
CCGACAATTTTATACTTGTCTTAACGAACAACCAACTTTAAATACTTGCC
CTACTGATGCTCAAAACCGGTCTTCATACTATGATGGTTTTTTCGAAAAG
AAATGTGTTAACCTTCCACAAGATCTGGTGCGAAGAACTTGCAACTACAG
TATGTATACAATGCTATAAGTGAACATAAAAAACACAGTAGTGTGTACGA
CGTTTCGACGGTTATCTTTGAACTTGATAAAAACACACTACTGTGTTTTT
TATGTTCACTTATACAATACTATAGTATAGTATAGTACTATAGACAGCTA
TAGAGTCAATATTTAACGTAAATAGCCCAGTAATCTAGGACATTCAGATC
ATTGACTTCAAAGCCCCGATGGGGCTAGACCTGAAACTTCTGGATGGGAA
ATAAAGTTACTTATTTCCCATTCAAAAAGCGTGACCCGCGTGGTTTTAAC
ATAAACGTCAGATTGAAAGTAGTACACCTACCTATCGCAGGATTCCGGTT
AAATAATGAAGGTTAAAAACAAAGAAAAGGCTATATTCAATATTCATTGA
TTTAATTGCACCCACAATATAACACAAAAAAAAGAAAGATAAGAACCAGT
CAATCAGTCGGGAACACTATATGGAAAAGGCAACTATTGTCTTAACGGGA
AATATTTCCCGAACGGGAAGGTGGAAAACTTCCCGAAATGGCTAGACTTT
CCAAATTGGAAAGTTCACCAGTTTCCCGATCGGGAAAGTGGCCTCTGAGC
ACTCCGGAAATGCCTGTGAAAATTTAAAAACTTGCCCCTCTTGTAAAGGA
GGAAAAATAAATAATATTCACCAGGTAGTTAAGAAATCCACCGGGTAATC
GCTTCTTAATTCTACTTTCCCCATTCCCAATGAAAACCTTTTGAAACTTT
TTCACGATTGGGAAACAAAAATCTGCTTTGTTTACAAAAATTCTATTTCC
CGTTCGGGAACGATGAAAAGTTCTTGACCAAAACGGGAAACCGTAATAGT
GATGAAATTTTAAATCTGGAAATAGTTTCCTTTTCGGGTTATTTTCACCT
TCCCGTTCGGGAAATACTTCCCGTTAAGGCAATAGTTGCCTTTTTCATAT
AGTGGTTCCGACTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTG
ATGAGTAAGCAAACGATTTCACTCTTATTTAAAAACAAAACATTTAAATG
CGATTGACTTTAAATTTGGTCTAAATCATAATAATGGGATGGACAGAACT
TAGGTTTGGCTCCTTACTTACGTTTATCAAATTTATAAGAACAATTTTAT
AAGAACATCAGCCTCAGATTAAGGCCCGCAGAATAATAACTCTATTGTTT
GGAACAATAGGAATTTAAGAACAATCTCAGACTCAGTCAAAATTTGGTTT
GTTTGTTTCAAAAAAGTGGTTCTTATTGTATTCCTCGGGTTCCACATGGA
CCCGTAGCTCAATGGTAGAGCAAATGCCCGCGAATGGCATGGTTGTGGGT
TCGAGTCTCGTTGCTTTTCCAATGGTTCTGGTGGCTGGTCAGAAGACAAC
ATGAGAGCGAATGTATTCAGTTCATTGATTTTCTTTATAATTTTCATTTT
TTTTCTCGTTTAGTTCAAGGGTGGTGGTCTACCTGGGCTCCTGCTCAAAC
TTGTTCACGAAACGGAGCTAACCAATGTGTCAGATCACGAACTCGATCAT
GCAACAATCCCTCGCCAAAGAACGATCCTTTCCCTTGTGGTTATTCTGTA
GCTAACTTGAGAGATGAGTCTGACACTATTGCTTGTCTGGAAAGCGAATG
TGCCCGTAAGTATGAGTGCGTCATCCGACGGTGGCTATTCTGAACAATTT
TTTTTGTTTGTTTTAATTGGAGCAGACAACTATTTAAATCTTAAGACCGA
AAAGTTTTTCAACATGTTTTTGTTTCCAAGACTATAAGTATGAAATACTC
AATGGGCTTTTCCAGAAATAGTCCGTGCCCCCTGTTGAGGATATTGGATA
TCCAGGGGGTAAAGTGTCTTTTCAAGTAGAAAATACGATATCCAGGGGTA
AGCATCTTTATAAGAGAGGATATCCAGGAGGTTCAGCATATTTTTAGGAA
TGGATATCTTGGGGGTCTTTACTAATAAGGTAGGATATCCGCCAGGGGGT
TTGATACTTCGAAAAATCAATATACTCAACAGTGGGGGTAAAAAATTTTT
TCTGGAAAAGCCCAATGCGTCACACTTGCTAATTGTNGCTTGACCAAGAT
TGGGGAGGTAAATTAAAAAAAATTGTGGCTAAAAGTGTGTTTTTTGATGT
GAAATTAGGGAAGGGGACTCCAGATTGGTTTAGTCCGTCTATTCGCCTTT
GGATCAAATTCTACTCCAATAAACAAAAAAGACATTTGTAAGTGCTTGAG
AGAAGGTAGCACTTTTTTTGTAAAAAGTCATTNGTGAAAATGTGTGGGGC
TCGTATTTTTAACTTTTTTACAAAATTTCACTGAAATCAAAAATTGTTGT
ACATTTGAAGTCAAGCGAATTCATAATGGATCAACACCTTGAAATATTTC
TTGCTTCTGTTTCTTTATAGAGCCATGTCAAGGAATCACATGTCCAGCAT
CATCGACTTGTGTCAATGTTGGAGTAAGCTACCAATGTCAATGTAACGCT
GGCTATCAACTCATTAGTGGAAACCAATTAACCGTCGTCTGTCAGGGTAA
GTTTGATGTGGTTATTTTGGTGTCGTCTTCTAGTAATTTGGAAGTTTCTC
TTACAANCGCCGCAGGCGATTTTTAGAAATCTCTTTATGAAGAAAACAGT
TCAGAAAGATTTCAAAGTTACCAAAATACCGTACTTTTTTTTATTAAAAT
ACCGAAATACCAGATAGAAAAAAGGCCGATACCGTGTCACCGTAAATCTC
TAAACCCCCTCCCTTTATTGTTTAAAATCCATTTTCCGACTCAGACGAAG
ACCTTTCCTTTGACCACAAAGTTTATCCGTTATAAATCCGTTGTGGTTGT
TTTGTTGTAATTTTCTAAAAATGCGAATGTTCTCTTAAGATGTTCTCAAA
TTTGTTGACTTTAAAGCCTCATTTTGGGAACTTTGTTTTTATAGAAAAAA
AAAACTTATATTTTATCTTCTATTACAGATATTAACGAATGTGCCAATTC
TCCATACCCATGTCTGTCAACACAACGTTGTACTAACATACAGGGATCAT
ATCAATGCTTGTCTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012768XLOC_012768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022717-exon-sc0000431-1575043694:108694..108770TCONS_00022717-exon-sc0000431-1575043694:108694..108770Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1575043694:105722..105931TCONS_00022717-exon-sc0000431-1575043694:105722..105931Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1575043694:104066..104257TCONS_00022717-exon-sc0000431-1575043694:104066..104257Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1575043694:103175..103300TCONS_00022717-exon-sc0000431-1575043694:103175..103300Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1575043694:102653..102742TCONS_00022717-exon-sc0000431-1575043694:102653..102742Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1510915933:108694..108770TCONS_00022717-exon-sc0000431-1510915933:108694..108770Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1510915933:105722..105931TCONS_00022717-exon-sc0000431-1510915933:105722..105931Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1510915933:104066..104257TCONS_00022717-exon-sc0000431-1510915933:104066..104257Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1510915933:103175..103300TCONS_00022717-exon-sc0000431-1510915933:103175..103300Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1510915933:102653..102742TCONS_00022717-exon-sc0000431-1510915933:102653..102742Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1491911889:108694..108770TCONS_00022717-exon-sc0000431-1491911889:108694..108770Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1491911889:105722..105931TCONS_00022717-exon-sc0000431-1491911889:105722..105931Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1491911889:104066..104257TCONS_00022717-exon-sc0000431-1491911889:104066..104257Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1491911889:103175..103300TCONS_00022717-exon-sc0000431-1491911889:103175..103300Clytia hemisphaericaexon
TCONS_00022717-exon-sc0000431-1491911889:102653..102742TCONS_00022717-exon-sc0000431-1491911889:102653..102742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000431supercontigsc0000431:102653..108770 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55361	2.8298	0.462588	0.132454	0.261049	0.80233	0	0.874934	0.0774461	0.128978	1.02899	0.0347106	62.9757	63.3779	0.166118	0.188528	0.174285	0.0466513	125.835	189.851	0.156944	0.425308	2.59767	1.61433	0	1.02878	0.432834	0.567771	0.828695	0.573914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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