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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022741 ID=TCONS_00022741|Name=TCONS_00022741|organism=Clytia hemisphaerica|type=transcript|length=1959bpRun BLAST on NCBI transcript from alignment at sc0000431:126981..152164- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022741 ID=TCONS_00022741|Name=TCONS_00022741|organism=Clytia hemisphaerica|type=transcript|length=25184bp|location=Sequence derived from alignment at sc0000431:126981..152164- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022741 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.330e-30 Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 2
Query: 809 NCDN---PVNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFGGLTCQ 1318
NC N PV+G +S+WS + CT++CG G Q + RTC NP +GG C+ N ++I CN+R CP +G + +W G C+ +CG GT T+ R C P PAFGGS C G T + C CPI+G + W + C+ +CG QR R C++PV Q+GG C+
Sbjct: 4577 NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-------EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRT-RGCSDPVPQYGGRKCE 4740 HSP 2 Score: 122.094 bits (305), Expect = 2.587e-28 Identity = 71/188 (37.77%), Postives = 96/188 (51.06%), Query Frame = 2
Query: 824 VNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFGGLTCQENPLIVNKAIVQFIACGRGRCP 1384
V+GGFSQWS + C+ TCG G Q++ R C P+P NGG CQ + ++ C + CP +G + W+ C +CG G T+TRTC P+ GG C G II C PCP++G ++AWQ G C+++CG G Q + R C NP FGG C + A Q C CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQG-------SDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYC-------DGAETQMQVCNERNCP 4698 HSP 3 Score: 102.834 bits (255), Expect = 2.860e-22 Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 2
Query: 776 QCQKCVTRAFPNCDNPVNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFGGLTC 1315
Q Q C R NC P++G ++ W+++ C+ +CG G +++ R C++PVP GG C+ + D CN CP +G + W+ G C+ TC G + + RTC P P+ GG C GP + I C CP++G + +W + C+ +CG G + ++R C +PV GG C
Sbjct: 4688 QMQVCNER---NC--PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-------CNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG--GPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPC 4853 HSP 4 Score: 89.3521 bits (220), Expect = 4.213e-18 Identity = 60/163 (36.81%), Postives = 81/163 (49.69%), Query Frame = 2
Query: 716 CGDCDIARTITCTSP--QFYDPQCQKC-VTRAFPNCDN-PVNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCP 1189
CG RT C+ P Q+ +C+ V F N D P +G +S WS +GTC++TC GQ + RTC NP P+NGG +C + I + CN CP +G + SW + C+ +CG G T+ R C P P GG C G TT + C CP
Sbjct: 4716 CGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQR-------CNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCP--GDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00022741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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