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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022754 ID=TCONS_00022754|Name=TCONS_00022754|organism=Clytia hemisphaerica|type=transcript|length=1991bp
tctttaaagtcaattattGCATTTCAGTAACAAACGATTCTCTGATTCGA
TTCTTACCAGCTCTCAATCGAACAGTCAGTCGATACAAAACCAAAACACA
AGTCCACGCTAATGATAAAATGGCgtgaattttgtaaaaaatacgCCCAC
CAAAATATTCATAAATATATCCACCCATAACACTACTGATAAAAAAACCA
AGTCCAAATACAAGGGAGTTTGTAAGGGCGAACATAAATGTTGAAATGTC
TACAGAACTGATACGCTGCACGTGACTGATGATAGCCGTTATAGCAATCC
CTTGACAAACGAAATCCAGAACTTCACATGCTAATAAAGGCCAGATTCCA
GGTAGAATAACATATCCAGAGAACTTGATAGCATATGCGAAAAGAACTAA
AATGAGAGAGTTCCATGTGCTTCCAAGTTTGTTTAGTAAATAGGATGAGC
AACCAAAGCCAATGAAAATTGAGATGGAACTGATCCAGAAGAACAGGGTG
AAGAAGAGTGGTAACGAGTTACGTTCTTCTATATAAGAGATAATGAAGAA
AGCTTTACTTGAAATCTCCATTCCTATAATGATAGCTGTTAAGAAGAAAA
TGATGGTACTAAGGCTAGTGCATTTGGACATGACTTTCCTTGTATATGTt
agcttcttctttttttgtggCGAGTTTTTTTCCGTTGTTATCGAGACTAC
ATCTGTTTCATCTTGGACTGTAAACGTGACTGAACTAAGCATATATTGGA
TGCATATGCATTCGAAAATTAACATAACAGGGTAGATAGCAAAGATGATG
GAAGTGCATGAGAAATTCATTTCAGTCTCTAAATCGATAATGGCTTTAGT
GATAGTTATGCCGAGTGCGTAGCCGAGTGTTCCAAATTTGCGTTGTGTTC
CAAACTCAATTTGATAAGGTGATAACTCAATTTTTCTGATAACCGCAACA
TCTACAAAGCTGACAAGTGATTCTTGAAAGAAGCATAATAAAACGTTAAT
GATCAAAATTAACCAGAATAAGATTGTTTGGTTTTCATCGTTATAACCAT
GATTATGTTTCAACGAAGGAGTCTGAGTGGTTGTCGAGTTTATTGAGACG
GTTTGATTAGATATTGTCGAGTTTGTGTTTGATACCAAGGTTATTGGACA
TATGTTAGTGGCAGGATTACCAAAACGTGAGGCTACCCATAGTTGcgaac
aaaacaaaatcaaagacATTGCAACTTGTATTAAAACAATTATCTTATGT
TTTTTAGTTGTATCAGCTATAATTCCGAATACTGAATTCCCAATAAGAGT
ACCAATTAAGCGTACACCGAGGATAATTCCAGCTTGTGAATGCGTTAACC
CGAACGTGGTGAACAGAACGAATAGATATGGAAGAGTTGCTGCATATCTC
ATTTCTTGAACCATGTAGGATACTTTTTCTGGTAGGCAATTAAAGTCGAT
GAAATACCAAGGACGATCGAGTTTTGGTTTGATGTACGATTTGGTTGACT
GGTTACTACCCCTCCTAGAAAACGTAGGAGATGATATACTACCTTTACCA
GGGCTGATTGGTAATGATTCTTGATAGAAAGAATGATTTCTTTTGCGTAC
CAACTCATCCTGTTCTGAACTATCCTCCAATCGTGGACTGGTTGGTAGGT
TTTCATCAAATGCTACAGTGTAAGGTGTTCGgtgttttgttttgacaaaa
TGTGAGTTctcaccaccaccaccaccaccaccaccatcaGTTGTGGCGGT
ACCAATTATAGGCGGATCATCTACAAAAACACAATCGTTAGCATCATCAA
TGATATCCTTACGGTCGTTTTCAATTTCATCTGCCGCATCTGCTATATCC
AAGATTGATGTGTCTTCAGTACCATTACCATTTTCGTTATCCATTTGTTT
ATCAAGAATCTCCTTTTTGTTATCCATTCGTTTATCAAGATTCtcctttt
tgttgcttttttctTATTACTTATAATTTTCTTTGCTAAAA Run BLAST on NCBI protein sequence of TCONS_00022754-protein >TCONS_00022754-protein ID=TCONS_00022754-protein|Name=TCONS_00022754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=637bp
MDNKKEILDKQMDNENGNGTEDTSILDIADAADEIENDRKDIIDDANDCV
FVDDPPIIGTATTDGGGGGGGGENSHFVKTKHRTPYTVAFDENLPTSPRL
EDSSEQDELVRKRNHSFYQESLPISPGKGSISSPTFSRRGSNQSTKSYIK
PKLDRPWYFIDFNCLPEKVSYMVQEMRYAATLPYLFVLFTTFGLTHSQAG
IILGVRLIGTLIGNSVFGIIADTTKKHKIIVLIQVAMSLILFCSQLWVAS
RFGNPATNICPITLVSNTNSTISNQTVSINSTTTQTPSLKHNHGYNDENQ
TILFWLILIINVLLCFFQESLVSFVDVAVIRKIELSPYQIEFGTQRKFGT
LGYALGITITKAIIDLETEMNFSCTSIIFAIYPVMLIFECICIQYMLSSV
TFTVQDETDVVSITTEKNSPQKKKKLTYTRKVMSKCTSLSTIIFFLTAII
IGMEISSKAFFIISYIEERNSLPLFFTLFFWISSISIFIGFGCSSYLLNK
LGSTWNSLILVLFAYAIKFSGYVILPGIWPLLACEVLDFVCQGIAITAII
SHVQRISSVDISTFMFALTNSLVFGLGFFISSVMGGYIYEYFGGRIFYKI
HAILSLAWTCVLVLYRLTVRLRAGKNRIRESFVTEMQ Run BLAST on NCBI transcript from alignment at sc0000431:260907..262897 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022754 ID=TCONS_00022754|Name=TCONS_00022754|organism=Clytia hemisphaerica|type=transcript|length=1991bp|location=Sequence derived from alignment at sc0000431:260907..262897 (Clytia hemisphaerica)
TTTTAGCAAAGAAAATTATAAGTAATAagaaaaaagcaacaaaaaggaGA
ATCTTGATAAACGAATGGATAACAAAAAGGAGATTCTTGATAAACAAATG
GATAACGAAAATGGTAATGGTACTGAAGACACATCAATCTTGGATATAGC
AGATGCGGCAGATGAAATTGAAAACGACCGTAAGGATATCATTGATGATG
CTAACGATTGTGTTTTTGTAGATGATCCGCCTATAATTGGTACCGCCACA
ACtgatggtggtggtggtggtggtggtggtgagAACTCACAttttgtcaa
aacaaaacacCGAACACCTTACACTGTAGCATTTGATGAAAACCTACCAA
CCAGTCCACGATTGGAGGATAGTTCAGAACAGGATGAGTTGGTACGCAAA
AGAAATCATTCTTTCTATCAAGAATCATTACCAATCAGCCCTGGTAAAGG
TAGTATATCATCTCCTACGTTTTCTAGGAGGGGTAGTAACCAGTCAACCA
AATCGTACATCAAACCAAAACTCGATCGTCCTTGGTATTTCATCGACTTT
AATTGCCTACCAGAAAAAGTATCCTACATGGTTCAAGAAATGAGATATGC
AGCAACTCTTCCATATCTATTCGTTCTGTTCACCACGTTCGGGTTAACGC
ATTCACAAGCTGGAATTATCCTCGGTGTACGCTTAATTGGTACTCTTATT
GGGAATTCAGTATTCGGAATTATAGCTGATACAACTAAAAAACATAAGAT
AATTGTTTTAATACAAGTTGCAATgtctttgattttgttttgttcgCAAC
TATGGGTAGCCTCACGTTTTGGTAATCCTGCCACTAACATATGTCCAATA
ACCTTGGTATCAAACACAAACTCGACAATATCTAATCAAACCGTCTCAAT
AAACTCGACAACCACTCAGACTCCTTCGTTGAAACATAATCATGGTTATA
ACGATGAAAACCAAACAATCTTATTCTGGTTAATTTTGATCATTAACGTT
TTATTATGCTTCTTTCAAGAATCACTTGTCAGCTTTGTAGATGTTGCGGT
TATCAGAAAAATTGAGTTATCACCTTATCAAATTGAGTTTGGAACACAAC
GCAAATTTGGAACACTCGGCTACGCACTCGGCATAACTATCACTAAAGCC
ATTATCGATTTAGAGACTGAAATGAATTTCTCATGCACTTCCATCATCTT
TGCTATCTACCCTGTTATGTTAATTTTCGAATGCATATGCATCCAATATA
TGCTTAGTTCAGTCACGTTTACAGTCCAAGATGAAACAGATGTAGTCTCG
ATAACAACGGAAAAAAACTCGccacaaaaaaagaagaagctaACATATAC
AAGGAAAGTCATGTCCAAATGCACTAGCCTTAGTACCATCATTTTCTTCT
TAACAGCTATCATTATAGGAATGGAGATTTCAAGTAAAGCTTTCTTCATT
ATCTCTTATATAGAAGAACGTAACTCGTTACCACTCTTCTTCACCCTGTT
CTTCTGGATCAGTTCCATCTCAATTTTCATTGGCTTTGGTTGCTCATCCT
ATTTACTAAACAAACTTGGAAGCACATGGAACTCTCTCATTTTAGTTCTT
TTCGCATATGCTATCAAGTTCTCTGGATATGTTATTCTACCTGGAATCTG
GCCTTTATTAGCATGTGAAGTTCTGGATTTCGTTTGTCAAGGGATTGCTA
TAACGGCTATCATCAGTCACGTGCAGCGTATCAGTTCTGTAGACATTTCA
ACATTTATGTTCGCCCTTACAAACTCCCTTGTATTTGGACTTGGTTTTTT
TATCAGTAGTGTTATGGGTGGATATATTTATGAATATTTTGGTGGGcgta
ttttttacaaaattcacGCCATTTTATCATTAGCGTGGACTTGTGTTTTG
GTTTTGTATCGACTGACTGTTCGATTGAGAGCTGGTAAGAATCGAATCAG
AGAATCGTTTGTTACTGAAATGCaataattgactttaaaga Coding sequence (CDS) from alignment at sc0000431:260907..262897 >TCONS_00022754 ID=TCONS_00022754|Name=TCONS_00022754|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at sc0000431:260907..262897 (Clytia hemisphaerica)
ATGGATAACAAAAAGGAGATTCTTGATAAACAAATGGATAACGAAAATGG
TAATGGTACTGAAGACACATCAATCTTGGATATAGCAGATGCGGCAGATG
AAATTGAAAACGACCGTAAGGATATCATTGATGATGCTAACGATTGTGTT
TTTGTAGATGATCCGCCTATAATTGGTACCGCCACAACtgatggtggtgg
tggtggtggtggtggtgagAACTCACAttttgtcaaaacaaaacacCGAA
CACCTTACACTGTAGCATTTGATGAAAACCTACCAACCAGTCCACGATTG
GAGGATAGTTCAGAACAGGATGAGTTGGTACGCAAAAGAAATCATTCTTT
CTATCAAGAATCATTACCAATCAGCCCTGGTAAAGGTAGTATATCATCTC
CTACGTTTTCTAGGAGGGGTAGTAACCAGTCAACCAAATCGTACATCAAA
CCAAAACTCGATCGTCCTTGGTATTTCATCGACTTTAATTGCCTACCAGA
AAAAGTATCCTACATGGTTCAAGAAATGAGATATGCAGCAACTCTTCCAT
ATCTATTCGTTCTGTTCACCACGTTCGGGTTAACGCATTCACAAGCTGGA
ATTATCCTCGGTGTACGCTTAATTGGTACTCTTATTGGGAATTCAGTATT
CGGAATTATAGCTGATACAACTAAAAAACATAAGATAATTGTTTTAATAC
AAGTTGCAATgtctttgattttgttttgttcgCAACTATGGGTAGCCTCA
CGTTTTGGTAATCCTGCCACTAACATATGTCCAATAACCTTGGTATCAAA
CACAAACTCGACAATATCTAATCAAACCGTCTCAATAAACTCGACAACCA
CTCAGACTCCTTCGTTGAAACATAATCATGGTTATAACGATGAAAACCAA
ACAATCTTATTCTGGTTAATTTTGATCATTAACGTTTTATTATGCTTCTT
TCAAGAATCACTTGTCAGCTTTGTAGATGTTGCGGTTATCAGAAAAATTG
AGTTATCACCTTATCAAATTGAGTTTGGAACACAACGCAAATTTGGAACA
CTCGGCTACGCACTCGGCATAACTATCACTAAAGCCATTATCGATTTAGA
GACTGAAATGAATTTCTCATGCACTTCCATCATCTTTGCTATCTACCCTG
TTATGTTAATTTTCGAATGCATATGCATCCAATATATGCTTAGTTCAGTC
ACGTTTACAGTCCAAGATGAAACAGATGTAGTCTCGATAACAACGGAAAA
AAACTCGccacaaaaaaagaagaagctaACATATACAAGGAAAGTCATGT
CCAAATGCACTAGCCTTAGTACCATCATTTTCTTCTTAACAGCTATCATT
ATAGGAATGGAGATTTCAAGTAAAGCTTTCTTCATTATCTCTTATATAGA
AGAACGTAACTCGTTACCACTCTTCTTCACCCTGTTCTTCTGGATCAGTT
CCATCTCAATTTTCATTGGCTTTGGTTGCTCATCCTATTTACTAAACAAA
CTTGGAAGCACATGGAACTCTCTCATTTTAGTTCTTTTCGCATATGCTAT
CAAGTTCTCTGGATATGTTATTCTACCTGGAATCTGGCCTTTATTAGCAT
GTGAAGTTCTGGATTTCGTTTGTCAAGGGATTGCTATAACGGCTATCATC
AGTCACGTGCAGCGTATCAGTTCTGTAGACATTTCAACATTTATGTTCGC
CCTTACAAACTCCCTTGTATTTGGACTTGGTTTTTTTATCAGTAGTGTTA
TGGGTGGATATATTTATGAATATTTTGGTGGGcgtattttttacaaaatt
cacGCCATTTTATCATTAGCGTGGACTTGTGTTTTGGTTTTGTATCGACT
GACTGTTCGATTGAGAGCTGGTAAGAATCGAATCAGAGAATCGTTTGTTA
CTGAAATGCaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022754-exon-sc0000431-1491911889:260907..262897 | TCONS_00022754-exon-sc0000431-1491911889:260907..262897 | Clytia hemisphaerica | exon |
| TCONS_00022754-exon-sc0000431-1510915933:260907..262897 | TCONS_00022754-exon-sc0000431-1510915933:260907..262897 | Clytia hemisphaerica | exon |
| TCONS_00022754-exon-sc0000431-1575043694:260907..262897 | TCONS_00022754-exon-sc0000431-1575043694:260907..262897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000431 | supercontig | sc0000431:260907..262897 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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