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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022784 ID=TCONS_00022784|Name=TCONS_00022784|organism=Clytia hemisphaerica|type=transcript|length=1035bp
GACAATGATTCGTGTTTTATAATAAACACTCTCAGAACAGATTGTAAAAG
CTGAACCATAGTGTAATCAAAATTGGATCATATAgttagaaaaaaaatac
caaatttaaCTTCATAATTCTATTTCACAGTATCTAAGTAATATAAAGAT
CTAAATAGTATAAAAATCGTCTGAAAGAACTAAAagttctttgaaatttt
ctgaaagaaaTTAGACTCAAAGTAATTgattgaaacaacattgttcTGCT
TAGCAGAGATAGGgaaaaaagtcttttttcaaTTAGCAATTCTGACTTTC
CAATTattgaatgttgaaaaaaataattgaaaacaatTAGCTTTATAGAC
CGGTTAGAAAAGTTAAAAAGCCAAAACTATCTATCATCTTGATGTATCAT
TTCCCTCTCAATAAAAATGAGAGAGACAATTCACCTCAATTTTCCTCTTT
CCTACACAAAATTAACATCACTGACCCCAAATATAATCAAAAGTAGGTTA
GCTTTTGACTTCTAATTGAGAATGCAACTGAGCCATTTGTTGTTCATGTT
TTTGTAAAACATCTGATTGTGCTTTACTCATCTCGACCATAAATTGTTCC
CATTGTTGTTCCCTCTGTGCTTTATGTTCAAGACGAACTTTCTCTAAATC
AGGGCTTCGGTCATCAAGAATATCAAGCCCAGAAGAAGCTGCTTTTACAA
CTTCACCGTGAATTATCTGAGTCTTTTCATTTAGTAATTGAACACATTCG
GGTACTAAGCCTTTGACCTTTTCTATAGATTGGTTTATCTCCCAAAACAC
TTTTGATGAATCGCGACTTTTCTTTGTTTCCAGCTCTTTGACCAGAAATT
TTGATTCTGCGTTGAGGACAGCTCTGTGGTTCAACAACCGTGAACATACA
TTAAACATATCTTTACATATCATGTCAACTTCATCTGCcattttgaactt
ttaattTTGTAATTATCTTATATTATCTAAGTTCTTGGTAGCTAAAAGAT
AAAAAGAGAATATAATTGATTTCAATTATATAAGG Run BLAST on NCBI protein sequence of TCONS_00022784-protein >TCONS_00022784-protein ID=TCONS_00022784-protein|Name=TCONS_00022784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MADEVDMICKDMFNVCSRLLNHRAVLNAESKFLVKELETKKSRDSSKVFW
EINQSIEKVKGLVPECVQLLNEKTQIIHGEVVKAASSGLDILDDRSPDLE
KVRLEHKAQREQQWEQFMVEMSKAQSDVLQKHEQQMAQLHSQLEVKS Run BLAST on NCBI transcript from alignment at sc0000432:19065..20099 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022784 ID=TCONS_00022784|Name=TCONS_00022784|organism=Clytia hemisphaerica|type=transcript|length=1035bp|location=Sequence derived from alignment at sc0000432:19065..20099 (Clytia hemisphaerica)
CCTTATATAATTGAAATCAATTATATTCTCTTTTTATCTTTTAGCTACCA
AGAACTTAGATAATATAAGATAATTACAAaattaaaagttcaaaatgGCA
GATGAAGTTGACATGATATGTAAAGATATGTTTAATGTATGTTCACGGTT
GTTGAACCACAGAGCTGTCCTCAACGCAGAATCAAAATTTCTGGTCAAAG
AGCTGGAAACAAAGAAAAGTCGCGATTCATCAAAAGTGTTTTGGGAGATA
AACCAATCTATAGAAAAGGTCAAAGGCTTAGTACCCGAATGTGTTCAATT
ACTAAATGAAAAGACTCAGATAATTCACGGTGAAGTTGTAAAAGCAGCTT
CTTCTGGGCTTGATATTCTTGATGACCGAAGCCCTGATTTAGAGAAAGTT
CGTCTTGAACATAAAGCACAGAGGGAACAACAATGGGAACAATTTATGGT
CGAGATGAGTAAAGCACAATCAGATGTTTTACAAAAACATGAACAACAAA
TGGCTCAGTTGCATTCTCAATTAGAAGTCAAAAGCTAACCTACTTTTGAT
TATATTTGGGGTCAGTGATGTTAATTTTGTGTAGGAAAGAGGAAAATTGA
GGTGAATTGTCTCTCTCATTTTTATTGAGAGGGAAATGATACATCAAGAT
GATAGATAGTTTTGGCTTTTTAACTTTTCTAACCGGTCTATAAAGCTAat
tgttttcaattatttttttcaacattcaatAATTGGAAAGTCAGAATTGC
TAAttgaaaaaagacttttttcCCTATCTCTGCTAAGCAgaacaatgttg
tttcaatcAATTACTTTGAGTCTAAtttctttcagaaaatttcaaagaac
tTTTAGTTCTTTCAGACGATTTTTATACTATTTAGATCTTTATATTACTT
AGATACTGTGAAATAGAATTATGAAGttaaatttggtattttttttctaa
cTATATGATCCAATTTTGATTACACTATGGTTCAGCTTTTACAATCTGTT
CTGAGAGTGTTTATTATAAAACACGAATCATTGTC Coding sequence (CDS) from alignment at sc0000432:19065..20099 >TCONS_00022784 ID=TCONS_00022784|Name=TCONS_00022784|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000432:19065..20099 (Clytia hemisphaerica)
atgGCAGATGAAGTTGACATGATATGTAAAGATATGTTTAATGTATGTTC
ACGGTTGTTGAACCACAGAGCTGTCCTCAACGCAGAATCAAAATTTCTGG
TCAAAGAGCTGGAAACAAAGAAAAGTCGCGATTCATCAAAAGTGTTTTGG
GAGATAAACCAATCTATAGAAAAGGTCAAAGGCTTAGTACCCGAATGTGT
TCAATTACTAAATGAAAAGACTCAGATAATTCACGGTGAAGTTGTAAAAG
CAGCTTCTTCTGGGCTTGATATTCTTGATGACCGAAGCCCTGATTTAGAG
AAAGTTCGTCTTGAACATAAAGCACAGAGGGAACAACAATGGGAACAATT
TATGGTCGAGATGAGTAAAGCACAATCAGATGTTTTACAAAAACATGAAC
AACAAATGGCTCAGTTGCATTCTCAATTAGAAGTCAAAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022784-exon-sc0000432-1491911889:19065..20099 | TCONS_00022784-exon-sc0000432-1491911889:19065..20099 | Clytia hemisphaerica | exon |
| TCONS_00022784-exon-sc0000432-1510915933:19065..20099 | TCONS_00022784-exon-sc0000432-1510915933:19065..20099 | Clytia hemisphaerica | exon |
| TCONS_00022784-exon-sc0000432-1575043694:19065..20099 | TCONS_00022784-exon-sc0000432-1575043694:19065..20099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:19065..20099 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017243 | Bloc1s5 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0031083 | BLOC-1 complex |
| GO:0030133 | transport vesicle |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0031083 |
BLOC-1 complex |
| cellular_component |
GO:0030133 |
transport vesicle |
Blast
The following BLAST results are available for this feature:
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