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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022785 ID=TCONS_00022785|Name=TCONS_00022785|organism=Clytia hemisphaerica|type=transcript|length=2145bp
CCGGaagtctttattttctttaaatttcattttaaagatgGCGAcatata
ctttcactttcgttttcttcgaAGAACGCAATAAAAAGCAAAGTTGGACA
CTGCACTGGACAGAGTGGCTGAAGTTTCTAATAGTTTTTTCTTCGAACTG
GATTTGTATTCAAACCATTTCCCGATCAAAATGGATCATGAAAGCATTCT
TAAAGGTAtttttgatcgtttttggaGCTGGCGACTTTTGAATGCTTCTG
AGTTTGCCACTTCAATTGGTAAACATCTGTACAGTGACAGACTGGATGAA
ATGAGTTTAAGCTCTTACAAACGCCGTGAAGATGAAGCTAGAAGTTTCCT
AGATGAAATTAAACTTGTCAGGGCCGATTCTTCAGTAAAATCTTTATCTG
AAATCAGTTCATTTAATGCAGAACTTCTTCAGGCAGACTTGGAACAGTTT
GTCCACGGCTTGCAGTTCCAAACTTGTTTGTTTCCGCTGAACATGTTAGA
AGGCCCTCACCTTGATTTCCCTAGGCTTCTTGATTGGATGGAGAAGAAGA
CACCAAAAAACTTTGAGGATATTATCACACGTTTACGTTTGTTTCCTCAG
AGAGTTGATGAATTGCTAAAACTCTTGAACGAAGGGATCTACAAAGGGAT
AACAATGCATAAAGTTTCTGTCACAGTTCTTCCGAAAACTTTGACTGACA
TGAGCTGCCTTACCCCAGAAGAAGCACCGCATTTCAAGCCATTTTTGGAG
AAGCCAGAAAGCTTTGATACAAAGGAGTGGGAAAGTGTTGTTCAAAAAGC
AAAAGATGTAATTGAGAAGGTTGTTTTGCCACAATACAAACGACTTTCTG
ACTTCATTGAAACCACTTACATTCATCACAGTAGACCAGAAATTGCAGCT
ACATCTCTCCCAAATGGAAAAGCTTTCTATGAAGCATGTTTAAAGTTCCA
TACAACAACCAACATGTCAGCTCAAGAAATCTTTGACAAAGGGAAAGAAG
AAGTTGCAAGAATTACAGCCAAAATGGAAGAAGTTAAACACTCTGTTGGC
TTTGAAGGGAGCCTAAAGGAGTTTCGTAAATACTTGAGAAGTGATCccaa
attcaaattcaagtcAAAACAAGATATTTTGGATCATTACAATAAAGTTT
ATGCTGATATTCTTTTAGTCTTGCCAAAATTGTTTGCTAGATTGCCAGAA
GCAAAATGCGAAATTGTTCCAGTTCCTGATGAAGTTGCACCAACCTTTCC
AGGTGCTTATTATCTTGCCCCTCCGGAGGATGGCAGTCGTCCAGGAACTT
TCTTTATCAACACCCACAATCCAACTAATCGTAAGAAGTACGAAGCTGTC
TCTTTAGCTTTACACGAAGCACAACCAGGTCATCATTTACAAGGTTCTTT
GACAATGGAATCAGGTGAAATGCTTGCTTTCCGACGTTTTATGGAAGATC
GAAATTATTATGAGCCTCCTGGTCGTTTTGCCATGAATTCCGCCTACGTT
GAAGGATGGGGATTGTATTGTGAATATCTTGGTGAAGAATTAAAGCTTTA
CGAAGATCCATACAATTTGTTTGGTCGGCTGTCACATGAAATGTTACGTG
CTTGTCGTTTGGTAGTAGATCCTGGGATGCATGCATTAGGATGGAGTCGA
CAACAAGCTATCGATTATCTACTTGAAAACACAGCTAGCAGCGAGGAAGA
TATTACTTCTGAAATCGATCGCTATATAACATGGCCAGGTCAAGCGTGTG
GCTACAAAATTggagaaatcaaaattaaagagcTTAGATCTCACGCTGAA
AAATCACTTGGTGATAAGTTTGATATTGGTAAATTCCATGATTTGATTGC
TTCTATGGGAGGTGTTCCCCTTGATATTCTAGAAGAGCAAATAAATAAGT
TTATTGCTGAGTATAAACGATAGATTATATTCTTTAGAAAACTGACAAAA
CGATCTCCGCTTTTCGAGAGCTAACGATCCTATGACGTATTGTATTGAGC
TTTAGAAAACattaaataattaatttttttcgtaATTTTAATTACgccaa
attttttacaaagctATGTTATAAGTAATTATTATTCATTCATATTATTC
AAttattaattaattattcaattgaTAAGCAGCAGCTGTTATTAT Run BLAST on NCBI protein sequence of TCONS_00022785-protein >TCONS_00022785-protein ID=TCONS_00022785-protein|Name=TCONS_00022785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp
MDHESILKGIFDRFWSWRLLNASEFATSIGKHLYSDRLDEMSLSSYKRRE
DEARSFLDEIKLVRADSSVKSLSEISSFNAELLQADLEQFVHGLQFQTCL
FPLNMLEGPHLDFPRLLDWMEKKTPKNFEDIITRLRLFPQRVDELLKLLN
EGIYKGITMHKVSVTVLPKTLTDMSCLTPEEAPHFKPFLEKPESFDTKEW
ESVVQKAKDVIEKVVLPQYKRLSDFIETTYIHHSRPEIAATSLPNGKAFY
EACLKFHTTTNMSAQEIFDKGKEEVARITAKMEEVKHSVGFEGSLKEFRK
YLRSDPKFKFKSKQDILDHYNKVYADILLVLPKLFARLPEAKCEIVPVPD
EVAPTFPGAYYLAPPEDGSRPGTFFINTHNPTNRKKYEAVSLALHEAQPG
HHLQGSLTMESGEMLAFRRFMEDRNYYEPPGRFAMNSAYVEGWGLYCEYL
GEELKLYEDPYNLFGRLSHEMLRACRLVVDPGMHALGWSRQQAIDYLLEN
TASSEEDITSEIDRYITWPGQACGYKIGEIKIKELRSHAEKSLGDKFDIG
KFHDLIASMGGVPLDILEEQINKFIAEYKR Run BLAST on NCBI transcript from alignment at sc0000432:39034..41178 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022785 ID=TCONS_00022785|Name=TCONS_00022785|organism=Clytia hemisphaerica|type=transcript|length=2145bp|location=Sequence derived from alignment at sc0000432:39034..41178 (Clytia hemisphaerica)
ATAATAACAGCTGCTGCTTAtcaattgaataattaattaataaTTGAATA
ATATGAATGAATAATAATTACTTATAACATagctttgtaaaaaatttggc
GTAATTAAAATtacgaaaaaaattaattatttaatGTTTTCTAAAGCTCA
ATACAATACGTCATAGGATCGTTAGCTCTCGAAAAGCGGAGATCGTTTTG
TCAGTTTTCTAAAGAATATAATCTATCGTTTATACTCAGCAATAAACTTA
TTTATTTGCTCTTCTAGAATATCAAGGGGAACACCTCCCATAGAAGCAAT
CAAATCATGGAATTTACCAATATCAAACTTATCACCAAGTGATTTTTCAG
CGTGAGATCTAAgctctttaattttgatttctccAATTTTGTAGCCACAC
GCTTGACCTGGCCATGTTATATAGCGATCGATTTCAGAAGTAATATCTTC
CTCGCTGCTAGCTGTGTTTTCAAGTAGATAATCGATAGCTTGTTGTCGAC
TCCATCCTAATGCATGCATCCCAGGATCTACTACCAAACGACAAGCACGT
AACATTTCATGTGACAGCCGACCAAACAAATTGTATGGATCTTCGTAAAG
CTTTAATTCTTCACCAAGATATTCACAATACAATCCCCATCCTTCAACGT
AGGCGGAATTCATGGCAAAACGACCAGGAGGCTCATAATAATTTCGATCT
TCCATAAAACGTCGGAAAGCAAGCATTTCACCTGATTCCATTGTCAAAGA
ACCTTGTAAATGATGACCTGGTTGTGCTTCGTGTAAAGCTAAAGAGACAG
CTTCGTACTTCTTACGATTAGTTGGATTGTGGGTGTTGATAAAGAAAGTT
CCTGGACGACTGCCATCCTCCGGAGGGGCAAGATAATAAGCACCTGGAAA
GGTTGGTGCAACTTCATCAGGAACTGGAACAATTTCGCATTTTGCTTCTG
GCAATCTAGCAAACAATTTTGGCAAGACTAAAAGAATATCAGCATAAACT
TTATTGTAATGATCCAAAATATCTTGTTTTgacttgaatttgaatttggG
ATCACTTCTCAAGTATTTACGAAACTCCTTTAGGCTCCCTTCAAAGCCAA
CAGAGTGTTTAACTTCTTCCATTTTGGCTGTAATTCTTGCAACTTCTTCT
TTCCCTTTGTCAAAGATTTCTTGAGCTGACATGTTGGTTGTTGTATGGAA
CTTTAAACATGCTTCATAGAAAGCTTTTCCATTTGGGAGAGATGTAGCTG
CAATTTCTGGTCTACTGTGATGAATGTAAGTGGTTTCAATGAAGTCAGAA
AGTCGTTTGTATTGTGGCAAAACAACCTTCTCAATTACATCTTTTGCTTT
TTGAACAACACTTTCCCACTCCTTTGTATCAAAGCTTTCTGGCTTCTCCA
AAAATGGCTTGAAATGCGGTGCTTCTTCTGGGGTAAGGCAGCTCATGTCA
GTCAAAGTTTTCGGAAGAACTGTGACAGAAACTTTATGCATTGTTATCCC
TTTGTAGATCCCTTCGTTCAAGAGTTTTAGCAATTCATCAACTCTCTGAG
GAAACAAACGTAAACGTGTGATAATATCCTCAAAGTTTTTTGGTGTCTTC
TTCTCCATCCAATCAAGAAGCCTAGGGAAATCAAGGTGAGGGCCTTCTAA
CATGTTCAGCGGAAACAAACAAGTTTGGAACTGCAAGCCGTGGACAAACT
GTTCCAAGTCTGCCTGAAGAAGTTCTGCATTAAATGAACTGATTTCAGAT
AAAGATTTTACTGAAGAATCGGCCCTGACAAGTTTAATTTCATCTAGGAA
ACTTCTAGCTTCATCTTCACGGCGTTTGTAAGAGCTTAAACTCATTTCAT
CCAGTCTGTCACTGTACAGATGTTTACCAATTGAAGTGGCAAACTCAGAA
GCATTCAAAAGTCGCCAGCtccaaaaacgatcaaaaaTACCTTTAAGAAT
GCTTTCATGATCCATTTTGATCGGGAAATGGTTTGAATACAAATCCAGTT
CGAAGAAAAAACTATTAGAAACTTCAGCCACTCTGTCCAGTGCAGTGTCC
AACTTTGCTTTTTATTGCGTTCTtcgaagaaaacgaaagtgaaagtatat
gTCGCcatctttaaaatgaaatttaaagaaaataaagacttCCGG Coding sequence (CDS) from alignment at sc0000432:39034..41178 >TCONS_00022785 ID=TCONS_00022785|Name=TCONS_00022785|organism=Clytia hemisphaerica|type=CDS|length=1743bp|location=Sequence derived from alignment at sc0000432:39034..41178 (Clytia hemisphaerica)
CTATCGTTTATACTCAGCAATAAACTTATTTATTTGCTCTTCTAGAATAT
CAAGGGGAACACCTCCCATAGAAGCAATCAAATCATGGAATTTACCAATA
TCAAACTTATCACCAAGTGATTTTTCAGCGTGAGATCTAAgctctttaat
tttgatttctccAATTTTGTAGCCACACGCTTGACCTGGCCATGTTATAT
AGCGATCGATTTCAGAAGTAATATCTTCCTCGCTGCTAGCTGTGTTTTCA
AGTAGATAATCGATAGCTTGTTGTCGACTCCATCCTAATGCATGCATCCC
AGGATCTACTACCAAACGACAAGCACGTAACATTTCATGTGACAGCCGAC
CAAACAAATTGTATGGATCTTCGTAAAGCTTTAATTCTTCACCAAGATAT
TCACAATACAATCCCCATCCTTCAACGTAGGCGGAATTCATGGCAAAACG
ACCAGGAGGCTCATAATAATTTCGATCTTCCATAAAACGTCGGAAAGCAA
GCATTTCACCTGATTCCATTGTCAAAGAACCTTGTAAATGATGACCTGGT
TGTGCTTCGTGTAAAGCTAAAGAGACAGCTTCGTACTTCTTACGATTAGT
TGGATTGTGGGTGTTGATAAAGAAAGTTCCTGGACGACTGCCATCCTCCG
GAGGGGCAAGATAATAAGCACCTGGAAAGGTTGGTGCAACTTCATCAGGA
ACTGGAACAATTTCGCATTTTGCTTCTGGCAATCTAGCAAACAATTTTGG
CAAGACTAAAAGAATATCAGCATAAACTTTATTGTAATGATCCAAAATAT
CTTGTTTTgacttgaatttgaatttggGATCACTTCTCAAGTATTTACGA
AACTCCTTTAGGCTCCCTTCAAAGCCAACAGAGTGTTTAACTTCTTCCAT
TTTGGCTGTAATTCTTGCAACTTCTTCTTTCCCTTTGTCAAAGATTTCTT
GAGCTGACATGTTGGTTGTTGTATGGAACTTTAAACATGCTTCATAGAAA
GCTTTTCCATTTGGGAGAGATGTAGCTGCAATTTCTGGTCTACTGTGATG
AATGTAAGTGGTTTCAATGAAGTCAGAAAGTCGTTTGTATTGTGGCAAAA
CAACCTTCTCAATTACATCTTTTGCTTTTTGAACAACACTTTCCCACTCC
TTTGTATCAAAGCTTTCTGGCTTCTCCAAAAATGGCTTGAAATGCGGTGC
TTCTTCTGGGGTAAGGCAGCTCATGTCAGTCAAAGTTTTCGGAAGAACTG
TGACAGAAACTTTATGCATTGTTATCCCTTTGTAGATCCCTTCGTTCAAG
AGTTTTAGCAATTCATCAACTCTCTGAGGAAACAAACGTAAACGTGTGAT
AATATCCTCAAAGTTTTTTGGTGTCTTCTTCTCCATCCAATCAAGAAGCC
TAGGGAAATCAAGGTGAGGGCCTTCTAACATGTTCAGCGGAAACAAACAA
GTTTGGAACTGCAAGCCGTGGACAAACTGTTCCAAGTCTGCCTGAAGAAG
TTCTGCATTAAATGAACTGATTTCAGATAAAGATTTTACTGAAGAATCGG
CCCTGACAAGTTTAATTTCATCTAGGAAACTTCTAGCTTCATCTTCACGG
CGTTTGTAAGAGCTTAAACTCATTTCATCCAGTCTGTCACTGTACAGATG
TTTACCAATTGAAGTGGCAAACTCAGAAGCATTCAAAAGTCGCCAGCtcc
aaaaacgatcaaaaaTACCTTTAAGAATGCTTTCATGATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022785-exon-sc0000432-1491911889:39034..41178 | TCONS_00022785-exon-sc0000432-1491911889:39034..41178 | Clytia hemisphaerica | exon |
| TCONS_00022785-exon-sc0000432-1510915933:39034..41178 | TCONS_00022785-exon-sc0000432-1510915933:39034..41178 | Clytia hemisphaerica | exon |
| TCONS_00022785-exon-sc0000432-1575043694:39034..41178 | TCONS_00022785-exon-sc0000432-1575043694:39034..41178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:39034..41178 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR010281 | DUF885 |
Blast
The following BLAST results are available for this feature:
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