TCONS_00022790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022790
Unique NameTCONS_00022790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022790 ID=TCONS_00022790|Name=TCONS_00022790|organism=Clytia hemisphaerica|type=transcript|length=400bp
GGGTGAGTTTGTCAATTTTGATCTTCCCCTGCCTAACAATGTTCCATCAG
AAACCCGCAACGCTTACTCTATTTCCCTTGATGATTCAGACCCTTCGGCT
GCCCCTAGGATCCTCCTTCACAATGGCAACCAAGCCCACAGAAGTAAGGT
CACCGATATCCACTCCTGGTTCTTGGCATGGTCACTGTTTTTCCAGGCTT
TCATCATATTCTATCCTCATCTTGCTGGCCAATTGGCCAAGTATCAAATC
TACATCGCTAAAATTGCCAAACATTTCAATTTTCGTTCTTGGTATGCCTA
TGACCAGGCTTTTAGACTATTCATTGCTAATAATCCATCAGAAAGGTGGG
GTGTTACTAATATGGATGTATTTAACACTCGGGGCCGTTACATTTACGTT
Run BLAST on NCBI

transcript from alignment at sc0000432:73363..73762

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022790 ID=TCONS_00022790|Name=TCONS_00022790|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0000432:73363..73762 (Clytia hemisphaerica)
AACGTAAATGTAACGGCCCCGAGTGTTAAATACATCCATATTAGTAACAC
CCCACCTTTCTGATGGATTATTAGCAATGAATAGTCTAAAAGCCTGGTCA
TAGGCATACCAAGAACGAAAATTGAAATGTTTGGCAATTTTAGCGATGTA
GATTTGATACTTGGCCAATTGGCCAGCAAGATGAGGATAGAATATGATGA
AAGCCTGGAAAAACAGTGACCATGCCAAGAACCAGGAGTGGATATCGGTG
ACCTTACTTCTGTGGGCTTGGTTGCCATTGTGAAGGAGGATCCTAGGGGC
AGCCGAAGGGTCTGAATCATCAAGGGAAATAGAGTAAGCGTTGCGGGTTT
CTGATGGAACATTGTTAGGCAGGGGAAGATCAAAATTGACAAACTCACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012803XLOC_012803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022790-exon-sc0000432-1491911889:73363..73762TCONS_00022790-exon-sc0000432-1491911889:73363..73762Clytia hemisphaericaexon
TCONS_00022790-exon-sc0000432-1510915933:73363..73762TCONS_00022790-exon-sc0000432-1510915933:73363..73762Clytia hemisphaericaexon
TCONS_00022790-exon-sc0000432-1575043694:73363..73762TCONS_00022790-exon-sc0000432-1575043694:73363..73762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:73363..73762 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371495	0.181133	0	0	6.26227	4.75059	2.86569	1.34141	0.313051	1.35718	0.376374	0.37112	0.617674	2.69413	1.37116	1.0187	2.23104	0.428764	0.394907	1.65297	0.718364	0.262795	0.851897	0.968123	1.59543	0.711941	0.254696	0	0.206165	0.630149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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