TCONS_00022794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022794
Unique NameTCONS_00022794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022794 ID=TCONS_00022794|Name=TCONS_00022794|organism=Clytia hemisphaerica|type=transcript|length=514bp
CGACATTTAGCGAGGGGACTTCTTGAAAGAGAAGAAGCAGAACGGTTGAA
TGGCTTCAGTAAAGATTCTTACATTTTACTTATTTTGCGTCCTTTTTGAG
CGCATATAGTTTCACATTATATCAATATATCAAAATGATGACCAGATGAC
CAAAAATAACCAAGTTTCTCAGGATCAAATCTCAAATCAAagcaaataga
aatagaaacaacGTCATAGCCAAATATATGAAAAATACTGATTCAGAAAT
AACTGCAAAGAAtagcattttgaatttaatagaGAAAGAATATTGATGAG
TGACAGAGGCTTTCCTGTTCAAGAACTCTGTTTTGTGAAAGGGATTTTTT
TGGAATCGTCCAAATCAAAAAGACGAAGATCAATTTTCACAACACGAAGT
CGTCCATAGTAATTTTGATATCACTTCNTAACTTTCACCATGCATGTATG
CGTTCAATGTGTCGTATAAATCGTTCCCATGTCTTTCTGTACCGAATAAG
TACGGAATCGTTGT
Run BLAST on NCBI

transcript from alignment at sc0000432:86419..86932

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022794 ID=TCONS_00022794|Name=TCONS_00022794|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0000432:86419..86932 (Clytia hemisphaerica)
ACAACGATTCCGTACTTATTCGGTACAGAAAGACATGGGAACGATTTATA
CGACACATTGAACGCATACATGCATGGTGAAAGTTANGAAGTGATATCAA
AATTACTATGGACGACTTCGTGTTGTGAAAATTGATCTTCGTCTTTTTGA
TTTGGACGATTCCAAAAAAATCCCTTTCACAAAACAGAGTTCTTGAACAG
GAAAGCCTCTGTCACTCATCAATATTCTTTCtctattaaattcaaaatgc
taTTCTTTGCAGTTATTTCTGAATCAGTATTTTTCATATATTTGGCTATG
ACgttgtttctatttctatttgctTTGATTTGAGATTTGATCCTGAGAAA
CTTGGTTATTTTTGGTCATCTGGTCATCATTTTGATATATTGATATAATG
TGAAACTATATGCGCTCAAAAAGGACGCAAAATAAGTAAAATGTAAGAAT
CTTTACTGAAGCCATTCAACCGTTCTGCTTCTTCTCTTTCAAGAAGTCCC
CTCGCTAAATGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012807XLOC_012807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022794-exon-sc0000432-1491911889:86419..86932TCONS_00022794-exon-sc0000432-1491911889:86419..86932Clytia hemisphaericaexon
TCONS_00022794-exon-sc0000432-1510915933:86419..86932TCONS_00022794-exon-sc0000432-1510915933:86419..86932Clytia hemisphaericaexon
TCONS_00022794-exon-sc0000432-1575043694:86419..86932TCONS_00022794-exon-sc0000432-1575043694:86419..86932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:86419..86932 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.453723	0	0	2.03924	1.20788	0.448645	0.280011	0.098021	0.849904	0	0.154938	0.480305	0	0.594455	0.425294	0.523928	0.537009	0.247302	0.258784	0.495168	0.374275	0	0	0.259479	1.22606	0.159498	0.903603	0.516427	0.131539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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