|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022795 ID=TCONS_00022795|Name=TCONS_00022795|organism=Clytia hemisphaerica|type=transcript|length=4645bp
cgaaaagatgaaaaaatgttCATAACAAAAATATGGCGACCATTAAAAGT
CATTTTTGaagagtgaagaagaaaaataacatCATGACATCGGATTTCTC
GAATAAGAAGCGTGAAACCATGAAAGAATGGCACCGAAAAGTAAAAGAGA
AAGCAAAATccgtttttcatgcagcaattGCGGCTCTTAAATTAGAGTCT
GCTGCTACCCACTATAAAACCTTGATATCTTTGTTGAATTCTTGTGGAGC
AAGAGTAGGAAACATAGGACATTATAGAAAGCGTGATCTCTACAGAATCG
AAAATCCTCCACTTGCTAGTAAAGATGCAACTTTCTAAAAACTCATCGTG
AGGGTTGTCAGAATCTCGTTGACTTTTGTgatatttgcaaaatattgcaG
ACTACTGAAAAAAGCATTCGTCCAATGATTAGGAACATTTGGACAATTTT
ACGGATCGTTCTTACAAGTGTGGCTACGTCTGTCACACCAAACCGAACTT
TCTCTTCACAAAGAAGGATCAAAACATGTTTGAGTCCAAGTATATGTATG
TCAATGACGCTACAACTTTTTGTTGAATCAATTTGCTTCCTCATATTATC
GGTAGAAGTGGCTCGATGTTTCACTGAATGTCAGGAGAAACGCCAAAGTG
AGTTTGGAACATTCAGGGAAAGGGATTTGtagaaaactcaaaatttgCCC
ATAAGGAAATAAGGATCTGGGATTTATTTTATGTATTATATTTAGAACAT
TTATCCGAAccgaaaaagaaaatcattgtATAATTATTGTACTAataata
ccgggtgacccatgAAAAAGTAAAAGAGTTCGGAgggtaactgtgtccga
aaaaaaatgaattttaactaaattctctttttgtggtaaagaggaaagac
aaacttaaattttgatgtatcattttttaattttggaaaagtatTTATCG
AGATATGGGAGTATAAAGTCATCagttattataaaaaagaaaagtcaaaa
aacgtcaaaaaagacagtatcaAATTTGTATCAGAACAAACATATCTTTC
CTTTGATAATTTGCTATTTCTTTGTCTTAAAGGGACATTTAAAAgaagta
aaatgtaaacattgcgcgaaccacgtgtcattaaagagaacaattaaaat
cacgtgtccaaaacaaacttgtaaaacaattgaacaatcaaaatttgatt
ttttattttgacatgtgacatttgttttgattttgtgcccgctgcataca
gtttgtttacaaattttgcaagtactgttatgtccccaGATGTCCCTTTA
AAAGTTTCGTTAAGAAAAAATTAGTAATATCGAATTTTGGACAATTCCTG
AATCGTCCTTTTGGGAATAAATAAAAAGTACCAAAAGtagcaaaaagaat
tttcaaaatgccTTGTTTgatgttaattttattttgtggATGGCAATTGA
GTCGATCGCTAAAGGGTTGTTCACGGTGATGTGTAAAAAGTGATGTGTAA
GTGATCGCATTATTGGCTTATCATCGTCATCATTCGATCTAAGTCGGGTC
GTGAACTGTGGAGAGAgggtttttgtttgttttccaCAAAATAAATATTT
GTAAGAGCgttgaaagaaaactttcagAGATGGCTCAGCTAAGCAAAAAT
CAACGTGTATGGATTTGTCTGGAATACGCCAGAACAAATAACAATTCCGA
GGTAATTAGGCGATGGCGTCGTCATTGGCCTAATATTCTACCTCCAACAA
TTCGAACTATCATGAAGGCTTACAATAAACTTTTAACAGAGGGCACCTGT
TTGAACCTAAATAAAGGAAGAAGTAGTCCTAGACATACAGTAACTACACC
AGCAAACATTCAACTTGGTAGAAACTCGCTAATTGCAAATGGTCGAAGAT
CCTTAAGGAGGAATGGTCTTCGTTTGACTCGTTCTACATTTTTACGAATC
GCAAAAACCATTGCAACCGACTTATCAACACCATTGCTGCAAATCCTGGC
TTCCTTGACAATGTCATTTTTTCAGACGAAGCCATCCATCTTTAGTCTAA
ATTCACAGGTCGACACCAAGAACGTCATTAAATACAGTCAACATGGAAAT
GGGCATCCCGAAGACCATTTCGTTGAGTTCAAGTCAAGTGATGGTTTTGT
TGGGTTTGACTTGTAATGGCACTATTTTTGGACCACATTTTGTTCGCGGC
AAGCTGAATACACAGGAGTATTATGCGGATCGTAAGGTACAACGCCATTC
AGCGAGAATTCAGAAGAAATGGCATTAATCGTCAACAGATGTGGTGACAG
CAGGATGGAGCCTCCGCTCATACTAGCAACGCGTCTATAAGATATCTCCA
TGGACAGTTCCCACGAAAGCTCATGAGCAAAAATGGAGACTGGAATTGGC
CACCAAGATCCCCAGACTTGACGATCtgtgattttatcaaaatatgatCA
AATTTTTAGTCAAGGTTTAGTGTACACCATCACGTGCTTGTTCTTACCTC
GACCCGGAGCAAAGGTCCTGTGATCTGTTGTTAGAAACATTTGAACCGAA
CATCAAAGCTAACAGTTATAAAATGAGGGAACTTTTTAACAAGACCTATT
TTTCATAAGCTGCTAGCTGACTTAGCCTCAAAGATATATTCAATCTTCTA
TGTACACCATCAACTGTCTGCTCGATCCTTGACCCAGATCAAGTGTTCTG
AGATCTGTTACTGCGGTTTAATTTCAGTCAGTTGATTTCAATATAATctg
ttttttaatttaaatgtaaaatatattaaaatctCGATATATCATGACTT
GGTAGATTGGAATTATCAATAGCAACGATGAGAAAATGCTACTGACACCA
ACATTATttgaaatatcttaaaattttgacaATGTATTACTCAGACAGAC
TAAGCTCAGACAACAAACTTAAATTGTGAGGGTTATTGCATCATGACata
tgaataaattttgaaatatttcccaACCGTAAAATTGTGATACGTTATTT
GCAGAAAGTGGACTAAAATATATAGTGTATGTTATGTTATGCCTGGGTTA
TTGACTAAATAAATGCCATCTGTCATCTCATGGACAGAATCTCAGATTTA
CAAAAATTATGTACATtcaatttgcttaaaattttgataagaTAAGACAA
AACCAAATTTATATACAGTTGAGGCAAGAACTGATATAAACGACAAAGAA
AAGGAGAGGATGTTCATATCATATCAGACCTTTGATATTTATGTATAAAT
GTGAAATGTGAAATCCCTCGTAGAATCAgcgaaatatcttttgaaaattt
gttctgACTGAAAGGTTTTGTTAAGATGTTTTATAGAGGAGTATTTCGGC
AGACAGCGAAGCATCTCTGGTTTCAACAAGTCGCCAAATCTTTTTCAGTT
CAGGTACAATGCAAATGCTCTTCGTGTGCATAACGTCATATTGTTCCTAC
TAAAACAGGCAAGACTAGAGGGGCCcacatgaaaacaaaaagaattcaTT
CATGGACAttcatttgtaaaaaattgttcATAAACTGACAATGAAAGTCA
AGGGTAGGGGTAGGGTGTTGACAAAGTAGGACTCCCTCAAGTGTTATGTT
TATTTGAACTCATAAAATTCTTtatctttattaatttttttttgatgtac
TAATCTGTTACTTTCTTTAagtgaaaaatgcttgaaatgTCGTACAAAGA
CGACGCATTTGAGACAGAATCGGCTGGAAATGATGCCAGGCATATATTGG
ATGAAAAGCAGTAAGCAAATAGGGAAAGAAAGCGTAATCGCAGACAtaga
cagaatgcaaaaaataGGGAACGCAAATTAAAAATGGACAAACTATTAAT
AGAAAATGCAATGCAAAAAGAGAAAGTCAAAGACAACTCCCAAGGACAAG
CAACGCTTCTTCCTTGAAAACCTCAAGTTGAAACATCCCGACATTGATAA
ACTATATTATTTTTGTGATGGGTGTGGTGGTCAGTATAAGAACTACAAAA
AACTTCATGAACTTATGCATGCATGAGCATGATTTTAACATTCAGGCTGA
ATGGGTATTTTTTGCCACAACCTATGGCAAATCACCATGTGATGGCATAG
GAGGCGCTGTCAAAAGACACGTTGCCAGGAGAAGCCTTCAAAGTCCTATA
ATAACAGATTCTTGATTATAAATCGATGCTGGAGCTTTGTGTGAAAGAAA
TgaattcaattaaatttttcgaCATTAATAAGGAAGAAATGATTAAAGTG
AGATCAGGCTTTGAACTGAGGTACAGGAATGGAGACACTGTCCCCGGGAC
GAGGGCAAGTCATCATTCTATACCTTTATCCTCAACAAAAATTGCTCATA
AGCTGACCAGTGAAGATGAAGCATACCTTGATGTTCACACTTTCAATATG
CCAACCATTTTCAGGATAACTGATTTGACTACATCTACATAATAGGTCAC
ATGTAAATGCATATCTTTTTGGTGGATTGGATTACGAAAGTCAACCCAAA
AGAAGGTGACGTACAAGTTGATTTTATGCACCCTCATGGgccaagaaaat
cttttaattggCCTGAACATTTTGTTCCCATAAAAACATTATTCTTAAAA
TTGCAGCACCAACAACTACGACTGGTAGAACATATACAATAGCAC Run BLAST on NCBI protein sequence of TCONS_00022795-protein >TCONS_00022795-protein ID=TCONS_00022795-protein|Name=TCONS_00022795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MAQLSKNQRVWICLEYARTNNNSEVIRRWRRHWPNILPPTIRTIMKAYNK
LLTEGTCLNLNKGRSSPRHTVTTPANIQLGRNSLIANGRRSLRRNGLRLT
RSTFLRIAKTIATDLSTPLLQILASLTMSFFQTKPSIFSLNSQVDTKNVI
KYSQHGNGHPEDHFVEFKSSDGFVGFDL Run BLAST on NCBI transcript from alignment at sc0000432:87424..92068 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022795 ID=TCONS_00022795|Name=TCONS_00022795|organism=Clytia hemisphaerica|type=transcript|length=4645bp|location=Sequence derived from alignment at sc0000432:87424..92068 (Clytia hemisphaerica)
GTGCTATTGTATATGTTCTACCAGTCGTAGTTGTTGGTGCTGCAATTTTA
AGAATAATGTTTTTATGGGAACAAAATGTTCAGGccaattaaaagatttt
cttggcCCATGAGGGTGCATAAAATCAACTTGTACGTCACCTTCTTTTGG
GTTGACTTTCGTAATCCAATCCACCAAAAAGATATGCATTTACATGTGAC
CTATTATGTAGATGTAGTCAAATCAGTTATCCTGAAAATGGTTGGCATAT
TGAAAGTGTGAACATCAAGGTATGCTTCATCTTCACTGGTCAGCTTATGA
GCAATTTTTGTTGAGGATAAAGGTATAGAATGATGACTTGCCCTCGTCCC
GGGGACAGTGTCTCCATTCCTGTACCTCAGTTCAAAGCCTGATCTCACTT
TAATCATTTCTTCCTTATTAATGtcgaaaaatttaattgaattcATTTCT
TTCACACAAAGCTCCAGCATCGATTTATAATCAAGAATCTGTTATTATAG
GACTTTGAAGGCTTCTCCTGGCAACGTGTCTTTTGACAGCGCCTCCTATG
CCATCACATGGTGATTTGCCATAGGTTGTGGCAAAAAATACCCATTCAGC
CTGAATGTTAAAATCATGCTCATGCATGCATAAGTTCATGAAGTTTTTTG
TAGTTCTTATACTGACCACCACACCCATCACAAAAATAATATAGTTTATC
AATGTCGGGATGTTTCAACTTGAGGTTTTCAAGGAAGAAGCGTTGCTTGT
CCTTGGGAGTTGTCTTTGACTTTCTCTTTTTGCATTGCATTTTCTATTAA
TAGTTTGTCCATTTTTAATTTGCGTTCCCtattttttgcattctgtctaT
GTCTGCGATTACGCTTTCTTTCCCTATTTGCTTACTGCTTTTCATCCAAT
ATATGCCTGGCATCATTTCCAGCCGATTCTGTCTCAAATGCGTCGTCTTT
GTACGAcatttcaagcatttttcactTAAAGAAAGTAACAGATTAgtaca
tcaaaaaaaaattaataaagataAAGAATTTTATGAGTTCAAATAAACAT
AACACTTGAGGGAGTCCTACTTTGTCAACACCCTACCCCTACCCTTGACT
TTCATTGTCAGTTTATgaacaattttttacaaatgaaTGTCCATGAAtga
attctttttgttttcatgtgGGCCCCTCTAGTCTTGCCTGTTTTAGTAGG
AACAATATGACGTTATGCACACGAAGAGCATTTGCATTGTACCTGAACTG
AAAAAGATTTGGCGACTTGTTGAAACCAGAGATGCTTCGCTGTCTGCCGA
AATACTCCTCTATAAAACATCTTAACAAAACCTTTCAGTcagaacaaatt
ttcaaaagatatttcgcTGATTCTACGAGGGATTTCACATTTCACATTTA
TACATAAATATCAAAGGTCTGATATGATATGAACATCCTCTCCTTTTCTT
TGTCGTTTATATCAGTTCTTGCCTCAACTGTATATAAATTTGGTTTTGTC
TTAtcttatcaaaattttaagcaaattgaATGTACATAATTTTTGTAAAT
CTGAGATTCTGTCCATGAGATGACAGATGGCATTTATTTAGTCAATAACC
CAGGCATAACATAACATACACTATATATTTTAGTCCACTTTCTGCAAATA
ACGTATCACAATTTTACGGTtgggaaatatttcaaaatttattcatatGT
CATGATGCAATAACCCTCACAATTTAAGTTTGTTGTCTGAGCTTAGTCTG
TCTGAGTAATACATtgtcaaaattttaagatatttcaaATAATGTTGGTG
TCAGTAGCATTTTCTCATCGTTGCTATTGATAATTCCAATCTACCAAGTC
ATGATATATCGagattttaatatattttacatttaaattaaaaaacagAT
TATATTGAAATCAACTGACTGAAATTAAACCGCAGTAACAGATCTCAGAA
CACTTGATCTGGGTCAAGGATCGAGCAGACAGTTGATGGTGTACATAGAA
GATTGAATATATCTTTGAGGCTAAGTCAGCTAGCAGCTTATGAAAAATAG
GTCTTGTTAAAAAGTTCCCTCATTTTATAACTGTTAGCTTTGATGTTCGG
TTCAAATGTTTCTAACAACAGATCACAGGACCTTTGCTCCGGGTCGAGGT
AAGAACAAGCACGTGATGGTGTACACTAAACCTTGACTAAAAATTTGatc
atattttgataaaatcacaGATCGTCAAGTCTGGGGATCTTGGTGGCCAA
TTCCAGTCTCCATTTTTGCTCATGAGCTTTCGTGGGAACTGTCCATGGAG
ATATCTTATAGACGCGTTGCTAGTATGAGCGGAGGCTCCATCCTGCTGTC
ACCACATCTGTTGACGATTAATGCCATTTCTTCTGAATTCTCGCTGAATG
GCGTTGTACCTTACGATCCGCATAATACTCCTGTGTATTCAGCTTGCCGC
GAACAAAATGTGGTCCAAAAATAGTGCCATTACAAGTCAAACCCAACAAA
ACCATCACTTGACTTGAACTCAACGAAATGGTCTTCGGGATGCCCATTTC
CATGTTGACTGTATTTAATGACGTTCTTGGTGTCGACCTGTGAATTTAGA
CTAAAGATGGATGGCTTCGTCTGAAAAAATGACATTGTCAAGGAAGCCAG
GATTTGCAGCAATGGTGTTGATAAGTCGGTTGCAATGGTTTTTGCGATTC
GTAAAAATGTAGAACGAGTCAAACGAAGACCATTCCTCCTTAAGGATCTT
CGACCATTTGCAATTAGCGAGTTTCTACCAAGTTGAATGTTTGCTGGTGT
AGTTACTGTATGTCTAGGACTACTTCTTCCTTTATTTAGGTTCAAACAGG
TGCCCTCTGTTAAAAGTTTATTGTAAGCCTTCATGATAGTTCGAATTGTT
GGAGGTAGAATATTAGGCCAATGACGACGCCATCGCCTAATTACCTCGGA
ATTGTTATTTGTTCTGGCGTATTCCAGACAAATCCATACACGTTGATTTT
TGCTTAGCTGAGCCATCTctgaaagttttctttcaacGCTCTTACAAATA
TTTATTTTGtggaaaacaaacaaaaacccTCTCTCCACAGTTCACGACCC
GACTTAGATCGAATGATGACGATGATAAGCCAATAATGCGATCACTTACA
CATCACTTTTTACACATCACCGTGAACAACCCTTTAGCGATCGACTCAAT
TGCCATccacaaaataaaattaacatcAAACAAggcattttgaaaattct
ttttgctaCTTTTGGTACTTTTTATTTATTCCCAAAAGGACGATTCAGGA
ATTGTCCAAAATTCGATATTACTAATTTTTTCTTAACGAAACTTTTAAAG
GGACATCtggggacataacagtacttgcaaaatttgtaaacaaactgtat
gcagcgggcacaaaatcaaaacaaatgtcacatgtcaaaataaaaaatca
aattttgattgttcaattgttttacaagtttgttttggacacgtgatttt
aattgttctctttaatgacacgtggttcgcgcaatgtttacattttactt
cTTTTAAATGTCCCTTTAAGACAAAGAAATAGCAAATTATCAAAGGAAAG
ATATGTTTGTTCTGATACAAATTtgatactgtcttttttgacgttttttg
acttttcttttttataataactGATGACTTTATACTCCCATATCTCGATA
Aatacttttccaaaattaaaaaatgatacatcaaaatttaagtttgtctt
tcctctttaccacaaaaagagaatttagttaaaattcattttttttcgga
cacagttacccTCCGAACTCTTTTACTTTTTcatgggtcacccggtatta
tTAGTACAATAATTATacaatgattttctttttcggTTCGGATAAATGTT
CTAAATATAATACATAAAATAAATCCCAGATCCTTATTTCCTTATGGGca
aattttgagttttctaCAAATCCCTTTCCCTGAATGTTCCAAACTCACTT
TGGCGTTTCTCCTGACATTCAGTGAAACATCGAGCCACTTCTACCGATAA
TATGAGGAAGCAAATTGATTCAACAAAAAGTTGTAGCGTCATTGACATAC
ATATACTTGGACTCAAACATGTTTTGATCCTTCTTTGTGAAGAGAAAGTT
CGGTTTGGTGTGACAGACGTAGCCACACTTGTAAGAACGATCCGTAAAAT
TGTCCAAATGTTCCTAATCATTGGACGAATGCTTTTTTCAGTAGTCtgca
atattttgcaaatatcACAAAAGTCAACGAGATTCTGACAACCCTCACGA
TGAGTTTTTAGAAAGTTGCATCTTTACTAGCAAGTGGAGGATTTTCGATT
CTGTAGAGATCACGCTTTCTATAATGTCCTATGTTTCCTACTCTTGCTCC
ACAAGAATTCAACAAAGATATCAAGGTTTTATAGTGGGTAGCAGCAGACT
CTAATTTAAGAGCCGCaattgctgcatgaaaaacggATTTTGCTTTCTCT
TTTACTTTTCGGTGCCATTCTTTCATGGTTTCACGCTTCTTATTCGAGAA
ATCCGATGTCATGatgttatttttcttcttcactcttCAAAAATGACTTT
TAATGGTCGCCATATTTTTGTTATGaacattttttcatcttttcg Coding sequence (CDS) from alignment at sc0000432:87424..92068 >TCONS_00022795 ID=TCONS_00022795|Name=TCONS_00022795|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000432:87424..92068 (Clytia hemisphaerica)
TTACAAGTCAAACCCAACAAAACCATCACTTGACTTGAACTCAACGAAAT
GGTCTTCGGGATGCCCATTTCCATGTTGACTGTATTTAATGACGTTCTTG
GTGTCGACCTGTGAATTTAGACTAAAGATGGATGGCTTCGTCTGAAAAAA
TGACATTGTCAAGGAAGCCAGGATTTGCAGCAATGGTGTTGATAAGTCGG
TTGCAATGGTTTTTGCGATTCGTAAAAATGTAGAACGAGTCAAACGAAGA
CCATTCCTCCTTAAGGATCTTCGACCATTTGCAATTAGCGAGTTTCTACC
AAGTTGAATGTTTGCTGGTGTAGTTACTGTATGTCTAGGACTACTTCTTC
CTTTATTTAGGTTCAAACAGGTGCCCTCTGTTAAAAGTTTATTGTAAGCC
TTCATGATAGTTCGAATTGTTGGAGGTAGAATATTAGGCCAATGACGACG
CCATCGCCTAATTACCTCGGAATTGTTATTTGTTCTGGCGTATTCCAGAC
AAATCCATACACGTTGATTTTTGCTTAGCTGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022795-exon-sc0000432-1491911889:87424..92068 | TCONS_00022795-exon-sc0000432-1491911889:87424..92068 | Clytia hemisphaerica | exon |
| TCONS_00022795-exon-sc0000432-1510915933:87424..92068 | TCONS_00022795-exon-sc0000432-1510915933:87424..92068 | Clytia hemisphaerica | exon |
| TCONS_00022795-exon-sc0000432-1575043694:87424..92068 | TCONS_00022795-exon-sc0000432-1575043694:87424..92068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:87424..92068 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032135 | DUF4817 |
Blast
The following BLAST results are available for this feature:
|
