TCONS_00022797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022797
Unique NameTCONS_00022797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022797 ID=TCONS_00022797|Name=TCONS_00022797|organism=Clytia hemisphaerica|type=transcript|length=322bp
GGAAATTTAAAAATGCATTTTATAACATATCATAAAGTTTAAACAATATC
GTGAAATATTATTCAGTTGAAACTGGACAGACTATACTTTCAGCATAACC
ACTGGTCCGATTTCGTTGAAATTTTGACTGTAGGCTTCTATCGTCAATAC
CTAACCCTGGTCGAAATTTCAAGTTAATTGCATTTTTCAATCCTTAAATA
CCTAGGTCTTGTTTAGACAAAAAGGACGATTTTGGGACGGTTTGTAAAAG
GTGGTGAAAAATTGTCATGCTCAAAATCAACTTTCCAATGAGGTATTATA
TCTTTTATACCTTCAAGAGCAA
Run BLAST on NCBI

transcript from alignment at sc0000432:123777..124098

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022797 ID=TCONS_00022797|Name=TCONS_00022797|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at sc0000432:123777..124098 (Clytia hemisphaerica)
TTGCTCTTGAAGGTATAAAAGATATAATACCTCATTGGAAAGTTGATTTT
GAGCATGACAATTTTTCACCACCTTTTACAAACCGTCCCAAAATCGTCCT
TTTTGTCTAAACAAGACCTAGGTATTTAAGGATTGAAAAATGCAATTAAC
TTGAAATTTCGACCAGGGTTAGGTATTGACGATAGAAGCCTACAGTCAAA
ATTTCAACGAAATCGGACCAGTGGTTATGCTGAAAGTATAGTCTGTCCAG
TTTCAACTGAATAATATTTCACGATATTGTTTAAACTTTATGATATGTTA
TAAAATGCATTTTTAAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012810XLOC_012810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022797-exon-sc0000432-1491911889:123777..124098TCONS_00022797-exon-sc0000432-1491911889:123777..124098Clytia hemisphaericaexon
TCONS_00022797-exon-sc0000432-1510915933:123777..124098TCONS_00022797-exon-sc0000432-1510915933:123777..124098Clytia hemisphaericaexon
TCONS_00022797-exon-sc0000432-1575043694:123777..124098TCONS_00022797-exon-sc0000432-1575043694:123777..124098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:123777..124098 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.19753	0.306134	0.355451	0.695507	0.846712	1.00363	0.807221	1.13357	1.32273	0.983046	1.90834	0.83631	0.835148	2.81875	0	0.191302	0	0	0.667435	0.349212	0.303528	0.444151	0.719899	2.61797	0	0	1.29139	0	1.39376	0.355006
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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