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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022865 ID=TCONS_00022865|Name=TCONS_00022865|organism=Clytia hemisphaerica|type=transcript|length=1826bp
aactgaaaatggtgatatttattgaatttgcaagtgaagaaaatataaac
aaagaaCGAAAATATATCATACCTTGGGACCAGATTAATTTGGAATCAAA
GCAACCAATCAAACAGTTCAAACTTGATTTTAGGAAAGATTTGACAAAAA
TATTATGGGGATATATGTTGAATTTACTAATCAAGAAAACATAAACCGAA
AGAAACAGTATATCATCCCATGGCACCAGATTAATCTTGAATCAAACAAA
CCAATTAAAGCATTTAAACTTGATGATGATAAAGATATGGTCTGTTCAGA
GGGAAAGATTGTAATATTTGATAAGAGGAGTGACAAAGGAGATTTTGAGT
TTGCACCTTTTAACACTGATTCTTTTGATTCACTTACTTTGGTTAACCCA
TTTGATAATCAAGTTTCATCTCCACGTGCTATATCAAATGATGGAAAATT
GGCGGTCGGCATATTTCAAGAGCGATATACGCAAAGAACTAATTTACAAA
GTCATGGAGCTCAAGATCAAAGGCAGTGTTTTCAATTCATttataaaaca
atgttaaaagtGTTCAACAGGGACAAGAAAGGTGTCTGTAAAAACGATCT
TTTTGATGGAGAACGCTTGGATGTAAAACATGTTAAAATATCACCAAATA
ATAATTTTGTAGCTGTCATCTATTTGACTGATGATAGTAGTTTCGAATGT
AAAATGTTCAAATTTACCGATGAAGGATGGTGCAAATACTTGTACAAGTT
TTCATACGAGTATGACATGATTTCTTCGTTTGGCATAGCTGTTGCATTTG
ATACTATGTTCAATTCAAGAGAAGACCTTTATATGATAAGAATTATGAAT
TATGAATCAAGTGGAATCTTCGTTTATGATATCATCAAACAGAATTTGAT
TGAAGTCCCAGAGGTGCATGACTCCAGTTTTGATCAATCATTTCTTATTT
GTACTCCAAATCAGGATTTGGTTTATATCTACGACAAGTCAAATCTACTT
TTATGCTATAACCTAAGTGACGATTCTGCAATAGAACCAATCACAGTATT
AGATTTTGTAAAGGATTTTGGGATTGTGGTCTTTGATGACACAATTATGG
TTCATTATTTCACAAAAGTGAGAGTTTACGTTTCAACAGGTGTTGAACTG
TGTGTACTTTGTCCGTTCAAGAAAACAATTTTGCAAACATTTAAAATAGA
TATTGAATTTGAGTTAATTGAAGAACAGAAAATTATTGTCAACTGGTCTG
gtgaagaaatctttttttgttgtGCTGATGGTTTTTCAGTGAAGAATGAT
GtgtttgctttctttttctatGAAGATAAAAAGAAACAACTTAAATTAAC
AACATTGGCAAGGCGAGCTGTTCTTTCATTTTACCCATTGGTTTATTTGC
GAAAGTTAAATCTCCCTTCATCAGTCAAAGAACTATTAGGTATTGCTTGA
ATTATTGCATCATCAAGAGTAGCGTTTTCTCTGATTGGATCTCAAATCTT
GTGGAATGTAGTATATCACCAAATATGTTGGAAAATGCATCTGAGAGAAC
CTTTTTATCCAAAAATCAAAGTGGATTTCTTTtataatcaaatttatttt
ttcttttatgcctttaaattttatttgatgtttCTTGATCAAATTTTGCC
TTTTAAACcattttgatttaattattgttACTACAGTTTTTTGTTGTATC
ACAGTTCTTAATTGTTAGAAATTGAATACCAttcttttgatgtattttta
ttttactaaaCTTACCAAATTGTAAGTGGGGGCTGCTTCTGAAATCTAAC
TGTGCGAAATAAATAGAATACAGCCT Run BLAST on NCBI protein sequence of TCONS_00022865-protein >TCONS_00022865-protein ID=TCONS_00022865-protein|Name=TCONS_00022865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MGIYVEFTNQENINRKKQYIIPWHQINLESNKPIKAFKLDDDKDMVCSEG
KIVIFDKRSDKGDFEFAPFNTDSFDSLTLVNPFDNQVSSPRAISNDGKLA
VGIFQERYTQRTNLQSHGAQDQRQCFQFIYKTMLKVFNRDKKGVCKNDLF
DGERLDVKHVKISPNNNFVAVIYLTDDSSFECKMFKFTDEGWCKYLYKFS
YEYDMISSFGIAVAFDTMFNSREDLYMIRIMNYESSGIFVYDIIKQNLIE
VPEVHDSSFDQSFLICTPNQDLVYIYDKSNLLLCYNLSDDSAIEPITVLD
FVKDFGIVVFDDTIMVHYFTKVRVYVSTGVELCVLCPFKKTILQTFKIDI
EFELIEEQKIIVNWSGEEIFFCCADGFSVKNDVFAFFFYEDKKKQLKLTT
LARRAVLSFYPLVYLRKLNLPSSVKELLGIA Run BLAST on NCBI transcript from alignment at sc0000435:135973..140068- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022865 ID=TCONS_00022865|Name=TCONS_00022865|organism=Clytia hemisphaerica|type=transcript|length=4096bp|location=Sequence derived from alignment at sc0000435:135973..140068- (Clytia hemisphaerica)
AACTGAAAATGGTGATATTTATTGAATTTGCAAGTGAAGAAAATATAAAC
AAAGAACGAAAATATATCATACCTTGGGACCAGATTAATTTGGAATCAAA
GCAACCAATCAAACAGTTCAAACTTGATTTTAGGAAAGATTTGGTATGTT
CTGATGGGAAAATTGTGATTTATAAAAAGATAAAAGAAGGAGGTTTTTGT
TCGATTTCCTTCGACACTGATTTGATTGATTCACTTGCTTTGACTGGTCT
TTTTGACGAAGAGGAGATATTATTTCCCCGTGCAATATCCAATGATAGAA
AACTAGTAGTTAGTTTTGTACAACAGAAAACAAATAAGCGTGCATATTAT
GGACCTGATGATGATGATGAAAGCCCTTCCCGCTTTGGTTATAAAACTAT
GCTTAAAGTATTTAACAATGATAAGGAAACCAATGAAGTCAGTTTAAATG
ACATATTTGCTGGACAACACAGGGATATTGAAAATGTTCAAATTTCACCC
AACAATAATTTGGTTGCCCTTATATATTTCATTGCCAACAAACATTTCGA
ATGCAAAATATTCAAATTCAATGATAAAGGAGAGTGTAAATATCTGTGTA
AGTTTTCACATGAATATGTTAATGATGGTTGGGGTAAGTGTAGGTTTTAC
TCTACTTTTAATTCAAGAGAAGATCTTTATATGGTCACAGTATTGTCCAA
CCAAAATACAATTTTTGTGTTTGATATCAACAAGCAGAATTTAAGGAGAA
TCCCTTGTACACCTAGCTCGTGCTTTGATGAATCATTTCTTATTTGCACT
CCAAATCTGGATTTGGTTTATATCTACGACAAGTCAAATCTACTTTTATG
TTACAATCTAAGTGACAATTCCGCAATAGAACCAATCACAGTATTAGATT
TTGTAAAGGATTTTGGGATTGTGGTCTTTGATGACACAATTATGGTTCAT
TATTTCACAAAGGTGAGAGTTTACGTGTCAACAGGTGTTGAACTGTGTGT
ACTTTGTCCTTTCAAGAAGACGATTTTGCAAATATTTAAAATAGATTTTG
AATTGGAATGTATTGAAGAACAGAAAATTGTTCTGAACTGGTCTGGTGAA
GAAATCTTTTTTTGTATTGCGGATACTGAATCAGTGGAGCATGTTGTGTT
TGTATTCTTTTTCTGTGAAGATAAAAAGAAACACCTGGAATTGAAAAAAC
TAGCAAGGCGAGCTGTGCATACAACTTACCCGTTAGCTCATATACAAAAA
TTTAATCTGCCTTTCTCAATCAAAGCACTATTAGGTGTTGGGTGAATGGT
TATTAAATTTTTTCACTTACTTGAAAATTGTTTGTCAATTTTGTGGTTGT
GATGACTTATCCAATGTTCAGCTTTAAATATAATTTGTAAGAAATAAACT
CAAAGCGGTTCTTGTTTTGAAAGATTGTGTTCATCTGTTTAGCAGGCAAA
AGGATTTCTGAAGGATACCTTATTCTCAATCATTTTTTCGTGCCTTTTAT
TTTAGAAAACCTGCAATATAAAAATTTTACTTTCTCATCCTCTATGTGTC
ATTGGTTCAAGTTAAACATACTAATATTTAAATATAGAATATGCTAAAAA
CTATCAAAATTGAGTCAAAGCTGTCATCTTTTTTGTCTTGTTTATGTATA
CTTTTAATCAGAAATACTAAAAGAATACACAATAACTTCTGAGCTGTACA
AAAGTCAAATAATATTAAAAATATGCCAAAATAAAGAACATACAAGACTT
GACGGGAATGATGTTTATTTTATTCAGCACAACATGATTCAAATTGTATT
ATGTCTATAGGCCATTTCGCAGTCGAAATGAATCATGGGTAATAAGGACT
GATTGCTCCCCCATTATGGCTTCCCGTTGGCTTTACAGAAAAACATCGAA
ACTTTAGATCAACAGAGAGTCCTTATATAGAGCGTGGTGGTCCTGATTAC
CTAGGATTCTGACTGTAGTCCCGTGGTAGAGCATCCAGCTACGATGCGCA
AGGTTGTGGGTTCAACCTCTAGCCGGATCATACCAAAGATTCCCAAAATG
GCACTTGATGCCTCTCTGCTTGATGCTCAGCAATTAAGTGAAGGATCAGC
TCAGCAATTAAGTGAAGGATCAAGGGTAAGTGGAGTAACTCATGGAGAAA
GAGTGGCACCCTCCCCTACCTTTAGGGTAGATAGCTATCAAAAGAGGAGC
CTTTGGGTCGCCTCCGACTGCGGTTGTAGATTTACTTATTAACTTACTTA
TGGTTCTTTTCGACCTTGAAATGGCCTATGAAACCAACAATCAAAATTAT
TTATTGGAAATAATTTTTGACAAATCAAAATAATTTTTTCTTCTTTACTC
TACGTTACTATTAAGATAAAGCTTGTCTTAATATTTTCTTACTTTTATGT
TCTTCGTTTTTAGACAAAAATATTATGGGGATATATGTTGAATTTACTAA
TCAAGAAAACATAAACCGAAAGAAACAGTATATCATCCCATGGCACCAGA
TTAATCTTGAATCAAACAAACCAATTAAAGCATTTAAACTTGATGATGAT
AAAGATATGGTCTGTTCAGAGGGAAAGATTGTAATATTTGATAAGAGGAG
TGACAAAGGAGATTTTGAGTTTGCACCTTTTAACACTGATTCTTTTGATT
CACTTACTTTGGTTAACCCATTTGATAATCAAGTTTCATCTCCACGTGCT
ATATCAAATGATGGAAAATTGGCGGTCGGCATATTTCAAGAGCGATATAC
GCAAAGAACTAATTTACAAAGTCATGGAGCTCAAGATCAAAGGCAGTGTT
TTCAATTCATTTATAAAACAATGTTAAAAGTGTTCAACAGGGACAAGAAA
GGTGTCTGTAAAAACGATCTTTTTGATGGAGAACGCTTGGATGTAAAACA
TGTTAAAATATCACCAAATAATAATTTTGTAGCTGTCATCTATTTGACTG
ATGATAGTAGTTTCGAATGTAAAATGTTCAAATTTACCGATGAAGGATGG
TGCAAATACTTGTACAAGTTTTCATACGAGTATGACATGATTTCTTCGTT
TGGCATAGCTGTTGCATTTGATACTATGTTCAATTCAAGAGAAGACCTTT
ATATGATAAGAATTATGAATTATGAATCAAGTGGAATCTTCGTTTATGAT
ATCATCAAACAGAATTTGATTGAAGTCCCAGAGGTGCATGACTCCAGTTT
TGATCAATCATTTCTTATTTGTACTCCAAATCAGGATTTGGTTTATATCT
ACGACAAGTCAAATCTACTTTTATGCTATAACCTAAGTGACGATTCTGCA
ATAGAACCAATCACAGTATTAGATTTTGTAAAGGATTTTGGGATTGTGGT
CTTTGATGACACAATTATGGTTCATTATTTCACAAAAGTGAGAGTTTACG
TTTCAACAGGTGTTGAACTGTGTGTACTTTGTCCGTTCAAGAAAACAATT
TTGCAAACATTTAAAATAGATATTGAATTTGAGTTAATTGAAGAACAGAA
AATTATTGTCAACTGGTCTGGTGAAGAAATCTTTTTTTGTTGTGCTGATG
GTTTTTCAGTGAAGAATGATGTGTTTGCTTTCTTTTTCTATGAAGATAAA
AAGAAACAACTTAAATTAACAACATTGGCAAGGCGAGCTGTTCTTTCATT
TTACCCATTGGTTTATTTGCGAAAGTTAAATCTCCCTTCATCAGTCAAAG
AACTATTAGGTATTGCTTGAATTATTGCATCATCAAGAGTAGCGTTTTCT
CTGATTGGATCTCAAATCTTGTGGAATGTAGTATATCACCAAATATGTTG
GAAAATGCATCTGAGAGAACCTTTTTATCCAAAAATCAAAGTGGATTTCT
TTTATAATCAAATTTATTTTTTCTTTTATGCCTTTAAATTTTATTTGATG
TTTCTTGATCAAATTTTGCCTTTTAAACCATTTTGATTTAATTATTGTTA
CTACAGTTTTTTGTTGTATCACAGTTCTTAATTGTTAGAAATTGAATACC
ATTCTTTTGATGTATTTTTATTTTACTAAACTTACCAAATTGTAAGTGGG
GGCTGCTTCTGAAATCTAACTGTGCGAAATAAATAGAATACAGCCT Coding sequence (CDS) from alignment at sc0000435:135973..140068- >TCONS_00022865 ID=TCONS_00022865|Name=TCONS_00022865|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000435:135973..140068- (Clytia hemisphaerica)
ATGGGGATATATGTTGAATTTACTAATCAAGAAAACATAAACCGAAAGAA
ACAGTATATCATCCCATGGCACCAGATTAATCTTGAATCAAACAAACCAA
TTAAAGCATTTAAACTTGATGATGATAAAGATATGGTCTGTTCAGAGGGA
AAGATTGTAATATTTGATAAGAGGAGTGACAAAGGAGATTTTGAGTTTGC
ACCTTTTAACACTGATTCTTTTGATTCACTTACTTTGGTTAACCCATTTG
ATAATCAAGTTTCATCTCCACGTGCTATATCAAATGATGGAAAATTGGCG
GTCGGCATATTTCAAGAGCGATATACGCAAAGAACTAATTTACAAAGTCA
TGGAGCTCAAGATCAAAGGCAGTGTTTTCAATTCATTTATAAAACAATGT
TAAAAGTGTTCAACAGGGACAAGAAAGGTGTCTGTAAAAACGATCTTTTT
GATGGAGAACGCTTGGATGTAAAACATGTTAAAATATCACCAAATAATAA
TTTTGTAGCTGTCATCTATTTGACTGATGATAGTAGTTTCGAATGTAAAA
TGTTCAAATTTACCGATGAAGGATGGTGCAAATACTTGTACAAGTTTTCA
TACGAGTATGACATGATTTCTTCGTTTGGCATAGCTGTTGCATTTGATAC
TATGTTCAATTCAAGAGAAGACCTTTATATGATAAGAATTATGAATTATG
AATCAAGTGGAATCTTCGTTTATGATATCATCAAACAGAATTTGATTGAA
GTCCCAGAGGTGCATGACTCCAGTTTTGATCAATCATTTCTTATTTGTAC
TCCAAATCAGGATTTGGTTTATATCTACGACAAGTCAAATCTACTTTTAT
GCTATAACCTAAGTGACGATTCTGCAATAGAACCAATCACAGTATTAGAT
TTTGTAAAGGATTTTGGGATTGTGGTCTTTGATGACACAATTATGGTTCA
TTATTTCACAAAAGTGAGAGTTTACGTTTCAACAGGTGTTGAACTGTGTG
TACTTTGTCCGTTCAAGAAAACAATTTTGCAAACATTTAAAATAGATATT
GAATTTGAGTTAATTGAAGAACAGAAAATTATTGTCAACTGGTCTGGTGA
AGAAATCTTTTTTTGTTGTGCTGATGGTTTTTCAGTGAAGAATGATGTGT
TTGCTTTCTTTTTCTATGAAGATAAAAAGAAACAACTTAAATTAACAACA
TTGGCAAGGCGAGCTGTTCTTTCATTTTACCCATTGGTTTATTTGCGAAA
GTTAAATCTCCCTTCATCAGTCAAAGAACTATTAGGTATTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022865-exon-sc0000435-1575043694:139926..140068 | TCONS_00022865-exon-sc0000435-1575043694:139926..140068 | Clytia hemisphaerica | exon |
| TCONS_00022865-exon-sc0000435-1575043694:135973..137655 | TCONS_00022865-exon-sc0000435-1575043694:135973..137655 | Clytia hemisphaerica | exon |
| TCONS_00022865-exon-sc0000435-1510915933:139926..140068 | TCONS_00022865-exon-sc0000435-1510915933:139926..140068 | Clytia hemisphaerica | exon |
| TCONS_00022865-exon-sc0000435-1510915933:135973..137655 | TCONS_00022865-exon-sc0000435-1510915933:135973..137655 | Clytia hemisphaerica | exon |
| TCONS_00022865-exon-sc0000435-1491911889:139926..140068 | TCONS_00022865-exon-sc0000435-1491911889:139926..140068 | Clytia hemisphaerica | exon |
| TCONS_00022865-exon-sc0000435-1491911889:135973..137655 | TCONS_00022865-exon-sc0000435-1491911889:135973..137655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:135973..140068 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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