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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022885 ID=TCONS_00022885|Name=TCONS_00022885|organism=Clytia hemisphaerica|type=transcript|length=1655bp
atcgaattaaataaatgacccatcaaaatttaagtctatctttcttcttt
ctaatgaaataggagtggttcttttaaaaactttagattttgagaaaatt
agtttcaaagagagaaacttttttgtggcgcacccggtagacaAAATAGG
AAAGATGGTATTTCTAGAATTTACAAGTGAAGAAAATGtcaacagaaaaa
gaaaatatttcatccCTTGGAATCAGATTGATCTTGAATCAAAGACACCA
ATCAAAAAGTTTAAACTTGGTGATAATAGAGATATGGTGTGTTCTGAGGG
AAATATTGTCATTTTCAATACAACATGGCCCACAGGCAGTTTTGGCTCTG
CACATTTTAACACAGAATCTTTTGAATCATTAACCTTGAATGACCCCTTT
GACAAACAAGTGAACTGGCCTCGTGCTGTATCAAACGATGGAAAATTGGC
AGTTGGTTTGGTGCAACGGAGGTCAACTGAAAGGATGAATTTGCGAAGTC
ATGGACCTATAGATGAGGACGATACGTTCTGTTTTGTTCAGAGTACCATG
CTCAAAATTTTCAACagtaaaaaggaaaataaagttACTTGTAAGAACAT
ATTTGGTGGGCAATACATGGACGTACAACATATTAAAATCTCAACCAACA
ACAACTTAGTGGCTGTTATATATGTGAGTTACCGACAACGTGTTGAAtgc
aaaatattcaaatttactGACAAAGGAGGGTGTAAACAATTTAGGAAGTT
TAATTGGTGGTTTATTAATGAAGATGACGAGCTGGGCTTGCTTGAATCTT
CATTTAATGCCCGGGAGGATCTTTATATGATCACTGCACATACAAGTGGC
TGTGGAGATGCTATAAATACAATCCTTGTATATGAtattaataaaaaaga
aattatggGAATCCCATCTGATccagatttttgtttttttaaagcaTATT
TGATTTGTACCCAGGATCAAAATTTGGTTTATGTTTATGATGaggaaaat
attctttcatgTTATGATCTTGCACATGAGGATTACAATCGTGTTCCAAT
CATGGAGTGGAACATAAAAGCTGACCTTGATATCACCGTCTTTAACGGTT
CAATAGTCGTGCACCACTTCACTAAAACTAGAGTTTACGTATCCACAAGG
GATACATTGCACGTTCTTTGCCCCTTTAAGAAAACAATATTGCAATCATT
TGAGTTTCCAAATCAAGAGGATGTTGCTGAgctgaaaattgttttgaact
GGTCTGGTGAAGAAATCTTTCTTCGCAAATTAGAATATTCTTATGAAGTA
TTCACATTCTTCTTCTGTGAAAACAAGGAGGAACATTTGAAGTTGACAAC
ATTGACCAGACGAGCTGTGCATTCAAATTTTAGTATTGCATCTTTGCAAA
AAATGAACCTACCATCATCAATCAAAAGATTGTTGGGTGTGGcataaaaa
atattattgtttattattcatttttttcctgCTTTCAAAGGTTGTAAACT
TATTTTGCgtaaattgatttttcaatGATATTTCCCATTAACCTgcttta
aaaaaagagaaatttggcgggaaacgaagttgacattttttgtttttaca
tagtAACTTTTGGCCGAAATGATCTTGCAATGACAAATTTGAATTCCCAG
CAAAG Run BLAST on NCBI protein sequence of TCONS_00022885-protein >TCONS_00022885-protein ID=TCONS_00022885-protein|Name=TCONS_00022885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MVFLEFTSEENVNRKRKYFIPWNQIDLESKTPIKKFKLGDNRDMVCSEGN
IVIFNTTWPTGSFGSAHFNTESFESLTLNDPFDKQVNWPRAVSNDGKLAV
GLVQRRSTERMNLRSHGPIDEDDTFCFVQSTMLKIFNSKKENKVTCKNIF
GGQYMDVQHIKISTNNNLVAVIYVSYRQRVECKIFKFTDKGGCKQFRKFN
WWFINEDDELGLLESSFNAREDLYMITAHTSGCGDAINTILVYDINKKEI
MGIPSDPDFCFFKAYLICTQDQNLVYVYDEENILSCYDLAHEDYNRVPIM
EWNIKADLDITVFNGSIVVHHFTKTRVYVSTRDTLHVLCPFKKTILQSFE
FPNQEDVAELKIVLNWSGEEIFLRKLEYSYEVFTFFFCENKEEHLKLTTL
TRRAVHSNFSIASLQKMNLPSSIKRLLGVA Run BLAST on NCBI transcript from alignment at sc0000435:132924..134578 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022885 ID=TCONS_00022885|Name=TCONS_00022885|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at sc0000435:132924..134578 (Clytia hemisphaerica)
CTTTGCTGGGAATTCAAATTTGTCATTGCAAGATCATTTCGGCCAAAAGT
Tactatgtaaaaacaaaaaatgtcaacttcgtttcccgccaaatttctct
ttttttaaagcAGGTTAATGGGAAATATCattgaaaaatcaatttacGCA
AAATAAGTTTACAACCTTTGAAAGcaggaaaaaaatgaataataaacaat
aatattttttatgCCACACCCAACAATCTTTTGATTGATGATGGTAGGTT
CATTTTTTGCAAAGATGCAATACTAAAATTTGAATGCACAGCTCGTCTGG
TCAATGTTGTCAACTTCAAATGTTCCTCCTTGTTTTCACAGAAGAAGAAT
GTGAATACTTCATAAGAATATTCTAATTTGCGAAGAAAGATTTCTTCACC
AGACCagttcaaaacaattttcagcTCAGCAACATCCTCTTGATTTGGAA
ACTCAAATGATTGCAATATTGTTTTCTTAAAGGGGCAAAGAACGTGCAAT
GTATCCCTTGTGGATACGTAAACTCTAGTTTTAGTGAAGTGGTGCACGAC
TATTGAACCGTTAAAGACGGTGATATCAAGGTCAGCTTTTATGTTCCACT
CCATGATTGGAACACGATTGTAATCCTCATGTGCAAGATCATAAcatgaa
agaatattttcctCATCATAAACATAAACCAAATTTTGATCCTGGGTACA
AATCAAATAtgctttaaaaaaacaaaaatctggATCAGATGGGATTCcca
taatttcttttttattaataTCATATACAAGGATTGTATTTATAGCATCT
CCACAGCCACTTGTATGTGCAGTGATCATATAAAGATCCTCCCGGGCATT
AAATGAAGATTCAAGCAAGCCCAGCTCGTCATCTTCATTAATAAACCACC
AATTAAACTTCCTAAATTGTTTACACCCTCCTTTGTCagtaaatttgaat
attttgcaTTCAACACGTTGTCGGTAACTCACATATATAACAGCCACTAA
GTTGTTGTTGGTTGAGATTTTAATATGTTGTACGTCCATGTATTGCCCAC
CAAATATGTTCTTACAAGTaactttattttcctttttactGTTGAAAATT
TTGAGCATGGTACTCTGAACAAAACAGAACGTATCGTCCTCATCTATAGG
TCCATGACTTCGCAAATTCATCCTTTCAGTTGACCTCCGTTGCACCAAAC
CAACTGCCAATTTTCCATCGTTTGATACAGCACGAGGCCAGTTCACTTGT
TTGTCAAAGGGGTCATTCAAGGTTAATGATTCAAAAGATTCTGTGTTAAA
ATGTGCAGAGCCAAAACTGCCTGTGGGCCATGTTGTATTGAAAATGACAA
TATTTCCCTCAGAACACACCATATCTCTATTATCACCAAGTTTAAACTTT
TTGATTGGTGTCTTTGATTCAAGATCAATCTGATTCCAAGggatgaaata
ttttctttttctgttgaCATTTTCTTCACTTGTAAATTCTAGAAATACCA
TCTTTCCTATTTtgtctaccgggtgcgccacaaaaaagtttctctctttg
aaactaattttctcaaaatctaaagtttttaaaagaaccactcctatttc
attagaaagaagaaagatagacttaaattttgatgggtcatttatttaat
tcgat Coding sequence (CDS) from alignment at sc0000435:132924..134578 >TCONS_00022885 ID=TCONS_00022885|Name=TCONS_00022885|organism=Clytia hemisphaerica|type=CDS|length=1293bp|location=Sequence derived from alignment at sc0000435:132924..134578 (Clytia hemisphaerica)
ttatgCCACACCCAACAATCTTTTGATTGATGATGGTAGGTTCATTTTTT
GCAAAGATGCAATACTAAAATTTGAATGCACAGCTCGTCTGGTCAATGTT
GTCAACTTCAAATGTTCCTCCTTGTTTTCACAGAAGAAGAATGTGAATAC
TTCATAAGAATATTCTAATTTGCGAAGAAAGATTTCTTCACCAGACCagt
tcaaaacaattttcagcTCAGCAACATCCTCTTGATTTGGAAACTCAAAT
GATTGCAATATTGTTTTCTTAAAGGGGCAAAGAACGTGCAATGTATCCCT
TGTGGATACGTAAACTCTAGTTTTAGTGAAGTGGTGCACGACTATTGAAC
CGTTAAAGACGGTGATATCAAGGTCAGCTTTTATGTTCCACTCCATGATT
GGAACACGATTGTAATCCTCATGTGCAAGATCATAAcatgaaagaatatt
ttcctCATCATAAACATAAACCAAATTTTGATCCTGGGTACAAATCAAAT
AtgctttaaaaaaacaaaaatctggATCAGATGGGATTCccataatttct
tttttattaataTCATATACAAGGATTGTATTTATAGCATCTCCACAGCC
ACTTGTATGTGCAGTGATCATATAAAGATCCTCCCGGGCATTAAATGAAG
ATTCAAGCAAGCCCAGCTCGTCATCTTCATTAATAAACCACCAATTAAAC
TTCCTAAATTGTTTACACCCTCCTTTGTCagtaaatttgaatattttgca
TTCAACACGTTGTCGGTAACTCACATATATAACAGCCACTAAGTTGTTGT
TGGTTGAGATTTTAATATGTTGTACGTCCATGTATTGCCCACCAAATATG
TTCTTACAAGTaactttattttcctttttactGTTGAAAATTTTGAGCAT
GGTACTCTGAACAAAACAGAACGTATCGTCCTCATCTATAGGTCCATGAC
TTCGCAAATTCATCCTTTCAGTTGACCTCCGTTGCACCAAACCAACTGCC
AATTTTCCATCGTTTGATACAGCACGAGGCCAGTTCACTTGTTTGTCAAA
GGGGTCATTCAAGGTTAATGATTCAAAAGATTCTGTGTTAAAATGTGCAG
AGCCAAAACTGCCTGTGGGCCATGTTGTATTGAAAATGACAATATTTCCC
TCAGAACACACCATATCTCTATTATCACCAAGTTTAAACTTTTTGATTGG
TGTCTTTGATTCAAGATCAATCTGATTCCAAGggatgaaatattttcttt
ttctgttgaCATTTTCTTCACTTGTAAATTCTAGAAATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022885-exon-sc0000435-1491911889:132924..134578 | TCONS_00022885-exon-sc0000435-1491911889:132924..134578 | Clytia hemisphaerica | exon |
| TCONS_00022885-exon-sc0000435-1510915933:132924..134578 | TCONS_00022885-exon-sc0000435-1510915933:132924..134578 | Clytia hemisphaerica | exon |
| TCONS_00022885-exon-sc0000435-1575043694:132924..134578 | TCONS_00022885-exon-sc0000435-1575043694:132924..134578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:132924..134578 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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