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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022888 ID=TCONS_00022888|Name=TCONS_00022888|organism=Clytia hemisphaerica|type=transcript|length=997bp
TTTTGTTCGTGCTGTGGGCGGTATGGGAAAAACAACGATGCTTGAAATGT
ATATTCAAAAATGGGCCAAACGTCAACTTGGTTTACATTTTCCACTGaat
ttcatcttcttcttttcCTGCCGTGTACGGCAGTATCAAATCCATTGAGG
ATCTTTTCAAGAGAAAATACCCTGACATTTTTAATAAGATGGCTTTGAAA
GATCTAGAACCAGTCGCAGATAAAGTGTTGCTGGTTGTTGACGGGCTGGA
TGAATTACAAGACGTTTATGAATGCTCGGAAAAGAAGCCCAACAACAACG
GATCGCTAACTCCTTTTCAAATTGTCTTCGATCTTATCAACACACAAGGT
CATATCTTAAAAGGGCACAAAAGCATTGCATGTGGAAGACCAAAAGCCTG
tgactttttaaagaaaaagatatTGGATTTAAAAGCTTCCAACAGAAAgg
tgatcaaaatcaaaacagtgGAAGTTTGCGGATTTAAAGAAGAGGACGTT
GAAAAGTACATCCATAAATTCTTCAAcggaaatattgaaaaaatcagCCG
AGTACAGGAGATAATCAGATCATCCCATAATTTGAAAGTGATGTCCACAG
TTCCAGTGTTTGCCTGGGTCATCTGTAACGTATACAGCGAGGATCTCATA
ACGAAACCCTTGAACACTTGTACTGAACTTTATATGTACGCGTGTCTTGT
CTTCTTGAGGAAACATTTACAAGGCGTTTGCGAGAAAGGCTGTGACAACT
TACTTGAAATGCTGAATGATGAAAATGTAATCGAATGTATTTATTCTTTA
ATGACATTATCGGTGAAAACCTACATGCAAAACCAGGTGCTGTTTTCCGA
AGATGAGGTTCGTCAATTGAAATGTCCCGTGCATCTTGAGCAAACAGGTC
TAATTGTCAAATACAACCGCGGCGAAATGAGGGAACCAATCTATCAGTAT
AAACACCTAGTTCTTCAGGAATTCCTGACAGGACTTTATTTGTGCGT Run BLAST on NCBI protein sequence of TCONS_00022888-protein >TCONS_00022888-protein ID=TCONS_00022888-protein|Name=TCONS_00022888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MALKDLEPVADKVLLVVDGLDELQDVYECSEKKPNNNGSLTPFQIVFDLI
NTQGHILKGHKSIACGRPKACDFLKKKILDLKASNRKVIKIKTVEVCGFK
EEDVEKYIHKFFNGNIEKISRVQEIIRSSHNLKVMSTVPVFAWVICNVYS
EDLITKPLNTCTELYMYACLVFLRKHLQGVCEKGCDNLLEMLNDENVIEC
IYSLMTLSVKTYMQNQVLFSEDEVRQLKCPVHLEQTGLIVKYNRGEMREP
IYQYKHLVLQEFLTGLYLC Run BLAST on NCBI transcript from alignment at sc0000435:171858..172854 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022888 ID=TCONS_00022888|Name=TCONS_00022888|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at sc0000435:171858..172854 (Clytia hemisphaerica)
ACGCACAAATAAAGTCCTGTCAGGAATTCCTGAAGAACTAGGTGTTTATA
CTGATAGATTGGTTCCCTCATTTCGCCGCGGTTGTATTTGACAATTAGAC
CTGTTTGCTCAAGATGCACGGGACATTTCAATTGACGAACCTCATCTTCG
GAAAACAGCACCTGGTTTTGCATGTAGGTTTTCACCGATAATGTCATTAA
AGAATAAATACATTCGATTACATTTTCATCATTCAGCATTTCAAGTAAGT
TGTCACAGCCTTTCTCGCAAACGCCTTGTAAATGTTTCCTCAAGAAGACA
AGACACGCGTACATATAAAGTTCAGTACAAGTGTTCAAGGGTTTCGTTAT
GAGATCCTCGCTGTATACGTTACAGATGACCCAGGCAAACACTGGAACTG
TGGACATCACTTTCAAATTATGGGATGATCTGATTATCTCCTGTACTCGG
ctgattttttcaatatttccgTTGAAGAATTTATGGATGTACTTTTCAAC
GTCCTCTTCTTTAAATCCGCAAACTTCcactgttttgattttgatcaccT
TTCTGTTGGAAGCTTTTAAATCCAatatctttttctttaaaaagtcaCAG
GCTTTTGGTCTTCCACATGCAATGCTTTTGTGCCCTTTTAAGATATGACC
TTGTGTGTTGATAAGATCGAAGACAATTTGAAAAGGAGTTAGCGATCCGT
TGTTGTTGGGCTTCTTTTCCGAGCATTCATAAACGTCTTGTAATTCATCC
AGCCCGTCAACAACCAGCAACACTTTATCTGCGACTGGTTCTAGATCTTT
CAAAGCCATCTTATTAAAAATGTCAGGGTATTTTCTCTTGAAAAGATCCT
CAATGGATTTGATACTGCCGTACACGGCAGgaaaagaagaagatgaaatt
CAGTGGAAAATGTAAACCAAGTTGACGTTTGGCCCATTTTTGAATATACA
TTTCAAGCATCGTTGTTTTTCCCATACCGCCCACAGCACGAACAAAA Coding sequence (CDS) from alignment at sc0000435:171858..172854 >TCONS_00022888 ID=TCONS_00022888|Name=TCONS_00022888|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0000435:171858..172854 (Clytia hemisphaerica)
GCACAAATAAAGTCCTGTCAGGAATTCCTGAAGAACTAGGTGTTTATACT
GATAGATTGGTTCCCTCATTTCGCCGCGGTTGTATTTGACAATTAGACCT
GTTTGCTCAAGATGCACGGGACATTTCAATTGACGAACCTCATCTTCGGA
AAACAGCACCTGGTTTTGCATGTAGGTTTTCACCGATAATGTCATTAAAG
AATAAATACATTCGATTACATTTTCATCATTCAGCATTTCAAGTAAGTTG
TCACAGCCTTTCTCGCAAACGCCTTGTAAATGTTTCCTCAAGAAGACAAG
ACACGCGTACATATAAAGTTCAGTACAAGTGTTCAAGGGTTTCGTTATGA
GATCCTCGCTGTATACGTTACAGATGACCCAGGCAAACACTGGAACTGTG
GACATCACTTTCAAATTATGGGATGATCTGATTATCTCCTGTACTCGGct
gattttttcaatatttccgTTGAAGAATTTATGGATGTACTTTTCAACGT
CCTCTTCTTTAAATCCGCAAACTTCcactgttttgattttgatcaccTTT
CTGTTGGAAGCTTTTAAATCCAatatctttttctttaaaaagtcaCAGGC
TTTTGGTCTTCCACATGCAATGCTTTTGTGCCCTTTTAAGATATGACCTT
GTGTGTTGATAAGATCGAAGACAATTTGAAAAGGAGTTAGCGATCCGTTG
TTGTTGGGCTTCTTTTCCGAGCATTCATAAACGTCTTGTAATTCATCCAG
CCCGTCAACAACCAGCAACACTTTATCTGCGACTGGTTCTAGATCTTTCA
AAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022888-exon-sc0000435-1491911889:171858..172854 | TCONS_00022888-exon-sc0000435-1491911889:171858..172854 | Clytia hemisphaerica | exon |
| TCONS_00022888-exon-sc0000435-1510915933:171858..172854 | TCONS_00022888-exon-sc0000435-1510915933:171858..172854 | Clytia hemisphaerica | exon |
| TCONS_00022888-exon-sc0000435-1575043694:171858..172854 | TCONS_00022888-exon-sc0000435-1575043694:171858..172854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:171858..172854 . |
Blast
The following BLAST results are available for this feature:
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