|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022901 ID=TCONS_00022901|Name=TCONS_00022901|organism=Clytia hemisphaerica|type=transcript|length=343bp
ATGGTAGAGAAGCCGTGAATTTGTAAACAATctcaaaaaagaacattttt
ctgcaaaaaaatactGCTAGCACCGCTAGCACCAGCACGATGTCAACATC
AAGGCCAAAATACTTCACTCCAAATGAAGTAAGTGTTCACAATACACAGA
AAGACATATGGGTTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTTTG
AGTGTTCAACATCAAGgtGATGTACTTTTAAAACCTATCATAGCAAACGG
TGGTAAAGATTTATCTCATTGGTTTGACAAGAAAACTAAAGATATTCGAA
TGTACGTAGACCCGATCACCAAATGTCAGTTTCCCTATACTCC Run BLAST on NCBI transcript from alignment at sc0000436:236353..242871+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022901 ID=TCONS_00022901|Name=TCONS_00022901|organism=Clytia hemisphaerica|type=transcript|length=6519bp|location=Sequence derived from alignment at sc0000436:236353..242871+ (Clytia hemisphaerica)
ATGGTAGAGAAGCCGTGAATTTGTAAACAATctcaaaaaagaacattttt
ctgcaaaaaaatactGCTAGCACCGCTAGCACCAGCACGATGTCAACATC
AAGGCCAAAATACTTCACTCCAAATGAAGTAAGTGTTCACAATACACAGA
AAGACATATGGGTTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTTTG
AGTGTTCAACATCAAGGTATGTTTGTAGctttttttatccaattttttta
tgttttgaactATACATACTTTTACTGGACTGGTGGTGTTCTGATATTAT
GCGTATACATCATTGACATTGTGTTATTTTTAATACTCAATTTATTTGAC
ATGGTCAGGCTCTGGAGGTCACtcacagttacatcaatatgccttcttac
ctgtctttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaa
aaaagacataagtgtgagaacagagtaatcaaactcgtcagaaaaagtac
cattagaagtcataaaaaatcaacctaaataaatgaaatcaaaatcccag
agaacttcataattccccaaacaacattacattactatgtcaaactccca
ttacataaattttacaattacgtcagagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNgaaagggtaattacattttattgttcgcttcttttttaaagatt
ggccgggttggaaaagtatgaatttctttgtacatattttatctACCCCA
AATATtaaggaggctgagttttaaacaaatggtcaagttgaaacgaacga
taaatgtatcaaggtctgttttatttaccccctggtgacttaacaaaaga
gacttaactcgatgttacaatccaattattgaaagtttgtctcttccttt
ttataatgagcgagacatacgttctctgattacgcaattttcatattgac
attttcgaggcattttgatgtaactgactcACAGTCACTCACagtcagtc
tgggaaatcctctcaattgcacgcttatgttccgagggcaTAAGCGGGCA
ATTGCATGgtggttataatttacgcccgctcacgccccggttgaaattgc
ttagggatttcaaggggttcagaattctctaattcgggcgaaggcatggt
ttaacaggcaatccatttttacggaatcttcttcTACGATAAATTTTGAG
TAAAACTGCCCGCCTAGGGCAAAATTATTTTAGGGAACCAAAATGCAAAA
AGTGCATCTGggagctgaaaattttttttcagtaaacattttcaaattta
tatgtaTCATTTCTCATAGTATCTTAAACTCATTTGCAGTTGTTTTAGAG
CTAACAGCACTTCCGAAACttgattttgccatttttcaggctaaaaagcc
ttgaaattaaagctttttagcttaaaaacaGCCACAGCCATATCACAAAA
ATACAATGAATGCTGCAGTTTTAGTTATTCAAAATCCAACATAGGCCAAC
AATTGATCAAGAAAACTCATTTACAGCATGTTTGGCCTTCCCTGGATTGA
ACGGTTGaggattttattttccaaaaatcttggttacggaatgacggaaa
aattaaaaatgctgtaatattttaaggaaacattttcaaattaaaatatt
tggcaagttTCTACCTCTTACTGAGTACTTTCAAATCAGGCATAAATTGA
TTGCCATTGGGAGAAGACTGGTTTTTaattgagaaatcatttttggtTAC
GGAATGATGGAAAATTATCTTACTttactgaaataaaaattatgaaattt
tcacttaACCATATCACctcaaacattttttaagcTGAAACAGTAACTTT
GTATCAAAATCTAAGCATTTGATACATCTTGAAAACCTTTCCATTAACTC
TATATAGGGTTCTAAAGTTGAATAAGATTTTTACAGCAGATTCTGTTTCA
TATCATGTGTACTGCATTcatgataaatttgaaaaattggttgagtgtta
ccaaaaatctttttgattttctcaaagtgTTATCGTTGCTATGGCTAAAA
ATCATGACTTTGATGGCATAAACAACAGTCAGTGTCAATTTATTAACCAC
TTTAACAATGCAAATTTTTGGGTGACACTCTGTTTCATGGAAAAAATCGG
CAgtttttgagctttaaaatgCCATAACTTTAGTTTCGCTTGTGCTACAG
ACTTGTATGTGCTctcatttttcagcattttttattgtacatcctctgaa
atcaaaatcattcaaTGACAATCTCCACTTTATGCACAATATCCTTTTGA
AATAAAGGTGGTCTCTGgttccctttaaaataattttgccccctaggctt
ttgaaatacacctttcccgtaattcaaatttctcagaaatggcccgggaa
aatgtgcgctccaccgttgtgtataaaattgtttgggaggtaaaaaacgc
gttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgcgcattagttttacgaattacgggaaaggtgtattcaa
cagagctttcggaaggaattgcgtgtcaaaaatataagaaatttaaaagc
gtgcaattgcacgcttaccgcAAAAGCCGTCACCTGTCAACcttgcttaa
cgcttaccgcccgtttcagaacaatttcgataggCCTgtataaaaattct
gccattttgattaaccgtgcaattgcgcgcttacggcctcAGAACATAAG
cctgcaattgagaggatttcccagactgacaGTATATAAGTTTTGGGATG
TGCTGGGCTGCTGGTTGACCAAAAACCggtcagaaaaaaatattaagctt
tGTTTGTATCTGGCAGCTCGTGAAATTTTTCCGTCCAAGCATTAAAAACT
GCTTTCAGAAAGAAACATCGTGTCCATCTTATATCTTATCAGATTACAAC
AGATAGCAcctctcttttattttatgtCATCAAGGAAGATTCAAGGTCAG
CAGCAGGACCCTCTCGGCGCTCCGGAAACTTCCTGAGTTTTCTggagcag
ctaaaaaaacaatatttttctcTCCGAAAAGTTCTGGAGCTCTTCCCTTG
CTTCCGGAGTAAGTGATTCTTAACACAGTTCCGGTGCAGACCAATCGCCG
AAAATCGTGCTCCAGAATTTTCCAGTAGTATTTCGGAGCACGAAAAAAAC
AGCACTTTTAGCTCCGGATGTTTCTGGAtcggagcgccgggagggtcctt
cAGTAGCCCCTGTAGGTTTATATGATTAAAGAAAAAAGGTTTATCTTTTA
GATCATCAAAAGCCATGAGTTTTTTGTgataaaaaataatggaaaatgGG
GAACTTCCCtaaattctgcataatttatgcaaaattaaaggtATTTTTTA
CTACTAAAACGTTCATATGGTACCATCTGATCTATAAAAGTTGGAAAGTT
GTTGTACTgtagtatattttttttctcagtttgCAAAGCTCTATCAGGTG
ACTATAATATATGAATACCTTAAGGGACagtaaaggaagaaattttcgtg
gaATTTTATTTCGCGGTTCACTTATCACAGCTAGCTCAAAATTTGGAAGT
TTcacagaatttaattttgtggttgagagaaaaaccgcaaaattttaAAT
CCCGTAAAAATTTattctgcaaaaatttcttcccatgAAAATTTCTCCCC
TTAAGGTAAATTTTCCAAACTTATAAACTTTTGCTGGTGTACCCAGGGcc
ttgtttttaaaaaagacTATCatatgatagagctcttcaaactgagcaaa
aaagtgtattacaccaaagtcccaacttctctagatcaaaagttatgagc
ctatttgtggtcaaaaaggtgtttaattttgcataaattaatgcagattg
tggggaaatatcctgttttccatcagatttttaccacaaatgggccaata
aattttgatctagagaagttgggactttggtgtaatacacttttttgctc
agtttaaagagctctatcatgtgatataggtcttttttaatttgaagacc
ccccaaaaatcgccaattactcgttacttgcacgataatatcgtggaaac
tttttgattttggaatctacatatactaattcgcgagtttccaccaaaaa
aagttagttctaagatgtgtgtcacgaaatgaaacatttatcgacctcag
cagcgggactatcataaaaagagagaaagactGAATGCAATACATAATAG
AAGAAAATTAAAATGCTTTCCTGCTAATTGGTGAACGATAAACCATATAT
TCAACGTGATAAATTCGATATCGAAATTATTTAGTCTTGCTTTAATGATA
TTCGTATCAAGTTATATAtcatcaagctcgactgaataattttcgatatc
cgatttttcttgtcgaatatctgcttattagcgtattatgtgattaatta
atagaactagaactagaaaattatgatttttctggccttaaaataataaa
taataaaacagAACTACGCAAAAACTACGGGCTTTCAAGCTTGGTAATAT
TTAAATTCCAAATCAGCACCctcgaaatcttgaaaataagtGAAGCATTT
TGAGGGGGCATGCCGTGTATAGTTTCATTATTAAAATGTCACTGGAACtt
caaaaaaaacatgttttagcATGATACaatgtaactttttatttttgagt
ttAGATCTGAAGATGATCAAATTGATCggaaataaatctattgtcaaatt
aaataccgggtgcgccacaaaaaagtttctctctttaaaagtaattttct
cgaaatctaaaaattttaaaagaaccattcctattttattggNtaaattt
aaagtaaaaatttgataggtcaatttttaacgttttcgagcactttctga
aagtaacatttttattcaattggacATAAcctttgatctaatgaatcaaa
tttaataaatgacccatcaaaattcaagtctatctttcttctttccaatg
aaataagaatggttcttttaaaatttttagatttcgagaaaattagtttc
aaagagagaaactttttNataaaaaaattacttttggaaagtgctcaaaa
atgttaaaaatcgacctatcaaattattcagaagcataattacatgatgt
atcagtatttttgtttcagtcattaaaaagNTACCATTTTTGGTCTTTTT
ATCTAGCAAAATTGTTGACTTGACTCAACTTTTTACCAAATTGTATGAGA
TTAATAAAAAATTGCGATGTATTTCTGATACATACTTCTACCCAAATTGA
AGTTCAGTCAAAAACCAATCATTTTCAAGCACTTAAAATGCCTATTCTTG
CCATTCGTGctgattttgttgttgttattttttgttttcttcttttaggt
GATGTACTTTTAAAACCTATCATAGCAAACGGTGGTAAAGATTTATCTCA
TTGGTTTGACAAGAAAACTAAAGATGTAAGTATTATTAGATCACCACAAT
CCCTCAATTCATACTTTCACAAGCTTCACTAGAACATCCTTCTACATCGG
AATTAAAATAAAGCCGCTCGTCAGGAAAAGCagctttcaaaaacttttag
ctGAGTGTGCAGTGATTTAAATAAGATGAAGTTACTTAAGCTGCATATTA
TGGAAGAATTCTGGATTGTTTTGGTATGATACATTTAGCAGTTAAATCAC
AACACTCTTTTTTCTTCAGATTCGAATGTACGTAGACCCGATCACCAAAT
GTCAGTTTCCCTATACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022901-exon-sc0000436-1491911889:236353..236568 | TCONS_00022901-exon-sc0000436-1491911889:236353..236568 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1510915933:236353..236568 | TCONS_00022901-exon-sc0000436-1510915933:236353..236568 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1575043694:236353..236568 | TCONS_00022901-exon-sc0000436-1575043694:236353..236568 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1491911889:242501..242577 | TCONS_00022901-exon-sc0000436-1491911889:242501..242577 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1510915933:242501..242577 | TCONS_00022901-exon-sc0000436-1510915933:242501..242577 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1575043694:242501..242577 | TCONS_00022901-exon-sc0000436-1575043694:242501..242577 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1491911889:242822..242871 | TCONS_00022901-exon-sc0000436-1491911889:242822..242871 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1510915933:242822..242871 | TCONS_00022901-exon-sc0000436-1510915933:242822..242871 | Clytia hemisphaerica | exon |
| TCONS_00022901-exon-sc0000436-1575043694:242822..242871 | TCONS_00022901-exon-sc0000436-1575043694:242822..242871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:236353..242871 + |
Blast
BLAST of TCONS_00022901 vs. Swiss-Prot (Human)
Match: CB5D1 (Cytochrome b5 domain-containing protein 1 OS=Homo sapiens GN=CYB5D1 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.047e-27 Identity = 42/73 (57.53%), Postives = 61/73 (83.56%), Query Frame = 3
Query: 108 KYFTPNEVSVHNTQKDIWVSFLGKVYDLTPLSVQHQGDVLLKPIIANGGKDLSHWFDKKTKDIRMYVDPITKC 326
+YFTP EV+ HN +D+WVS+LG+VYDLT L+ +++G++LLKPI+ G+D+SHWFD KT+DIR ++DP+T C
Sbjct: 18 RYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWFDPKTRDIRKHIDPLTGC 90
The following BLAST results are available for this feature:
|
