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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022920 ID=TCONS_00022920|Name=TCONS_00022920|organism=Clytia hemisphaerica|type=transcript|length=1935bp
CGGAATTCTGACggattttcccttttttttcgaaacaaatatggtagaca
AAGGAGcggtaaataaaaaatattctccTTTCGTTGTTCTGTTGTCTGGT
CAGCACTGCTACTCATTTCTCGCTCTGTTTCAATCTTTTCACGCTTCACA
AGTACTTTAACTCGAGGAAGATCACATACTGAAAGATTTTCACATGAAGA
ATTGGATTTTATAATATGGCATGTTTGCTACTTACAAGGAAGCTTTATGG
TCAACCTGTGGTTCGGTCTTTCacgcaaaatatctcaaatgtGTCCGTGA
AAACAAGATTGTCATTGCCAACTAGAAAGCCACAACAACTTGTGACGAGA
ACGTTCCAAACAACATCAAAGGTTCATGCAGCACCTCTTGGACCATTACT
TGTCAAGTTATCATCGCCTTTATATCGCTTCGGATTTCTCTACCTTGGTC
GAAGGCTTCGTCAGTATTGGAATAATTTACCACCTGGTAAACGAGCAAAG
TAtactaaaatattttctaatagTCGGAATGCAATATTTGGAGGTGTTTT
TGCATTCGGTGGTTTATCAGGGTTGTATTATATTTCACATTTAGAAGAAG
CGCCGGTGACGCATCGTAAACGGTTTATGATTTTGAATCATTCACAACTA
GAGAAAGTTGCAGCCTTTGAATGGCAGAAAATGGATGAGATGCTTGAACG
AAAGAAATTGCCACCCCATCATCCTCTATTTAAGAAAGTTTACAAAATCG
TGAAGCGAATACTGATAGCCAATCAATCGAGAGAAGTGAATGGGATAAAA
TGGGAGGTCAATGTTGTTGATTCTGATGAAGTCAACGCATTTGTTTTGGC
CAATGGTCAAATATTCGTCTTCACTGGTATACTAAAtgaaatggaaaatg
aaaacgAACTAGCAGGTGTGCTCGGTCATGAAATTGCTCATGCTATTATG
GGACATTCTGCCGAGCTTCTTAGCTTAGCAGGATTTTTTAATGTATTTTC
ACTTGCGATTTTGACGACATTATGGGCGGTCATCCCCACTGATATCGGGG
CGTTTGCCGCTTCACTACTGCAAAATACAATTGAAGACTTGATTATTAAC
TTACCTTACTCACGAAAATTAGAGCAAGAAGCGGACGAAGTTGGTCTCTT
ACTGGCCGCGCGGGCGTGCTATGATGTTCGCTACGTGCCGAGATTCTGGC
ATCGAATGCATCTAAAAGACGGGGGTGGTAGTGACGCCATCATGAAATGG
TTTTCAACTCACCCAACAAACGCCAGTCGTGTTAAACAAATTGATGAACT
GATGCCGGAAGCTCTGGAGTTGAGGTCTTCTTTCCAATGTCCACAATTAC
AAGAATTCTATGATGCTTCTCATAGGTTTAGACATGTTCGATtgatttga
ccatttttagCAGTGAATATTCTGAACTTTctgaattgattgattgatga
tttagtattttacaaaactttgtAACACTCGGTGGATGTAATATTTTTGA
TATATTCTCTCAGTCGAAAATGCCTTCATTTACTTCACGTAGGCTTTTCA
TCAATTCGCCGATGATTTTACATGTTTTTGTGAGGCTTCTGTAAACAAAC
TTTCAGTAGTAGCGTGGTGACTTAGGCAAGTACCTCACCAAAAAGAAGGA
TTTTTTCATTCTGTAACTTACTTCTCAGAGAAAAGGCCGTGAAATTGCCT
GCTTCGTTAACACTTCCCCTTTTCCCTGCTAACACGCTACTGCTAACTCT
CTAAAATAGTATTATAGTTTAAAGTAAAGGATAGCATATTTAGAATATTT
TGTTCagtttcaattcaattttgtaccattttgtaaattttatgattttt
gtataGGCCTAGGTGTTTTTACACAACGTGATGTAGTGGGAATCTAAAAa
gagataaatgttttttttctaactCATTCCCGGAT Run BLAST on NCBI protein sequence of TCONS_00022920-protein >TCONS_00022920-protein ID=TCONS_00022920-protein|Name=TCONS_00022920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MACLLLTRKLYGQPVVRSFTQNISNVSVKTRLSLPTRKPQQLVTRTFQTT
SKVHAAPLGPLLVKLSSPLYRFGFLYLGRRLRQYWNNLPPGKRAKYTKIF
SNSRNAIFGGVFAFGGLSGLYYISHLEEAPVTHRKRFMILNHSQLEKVAA
FEWQKMDEMLERKKLPPHHPLFKKVYKIVKRILIANQSREVNGIKWEVNV
VDSDEVNAFVLANGQIFVFTGILNEMENENELAGVLGHEIAHAIMGHSAE
LLSLAGFFNVFSLAILTTLWAVIPTDIGAFAASLLQNTIEDLIINLPYSR
KLEQEADEVGLLLAARACYDVRYVPRFWHRMHLKDGGGSDAIMKWFSTHP
TNASRVKQIDELMPEALELRSSFQCPQLQEFYDASHRFRHVRLI Run BLAST on NCBI transcript from alignment at sc0000436:175570..181461- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022920 ID=TCONS_00022920|Name=TCONS_00022920|organism=Clytia hemisphaerica|type=transcript|length=5892bp|location=Sequence derived from alignment at sc0000436:175570..181461- (Clytia hemisphaerica)
CGGAATTCTGACGGATTTTCCCTTTTTTTTCGAAACAAATATGGTAGACA
AAGGAGCGGTAAATAAAAAATATTCTCCTTTCGTTGTTCTGTTGTCTGGT
CAGCACTGCTACTCATTTCTCGCTCTGTTTCAATCTTTTCACGCTTCACA
AGTACTTTAACTCGAGGAAGATCACATACTGAAAGATTTTCACATGAAGA
ATTGGATTTTGTAAGTGTTTTTTTATTTTAATGTTCTTATTTTTGTTTTG
CACAAAGAGTCAAGACATATAAGTATAGACAAATCAAATTTTTCAATCTG
GCAGACCACAAGGACTGGACTGGAGTTTGGTTATTAATAGACAAAGGCCT
TCTTAGGGGCACTGACCTTGTACCCTGTGACTTGACTTTGGATCCCGTAG
GATCCTATGTTTGCTTCCACTGATGCAAATTTTTTACGTTCTCACACACA
GCGGTAGGAAGGGTTGGGAGAGCTGTTTCTATTAAATTCTGTAAATTTCA
TAAATGACAGTATTCCGTTGTGTCTCGGTGGCGTCTCGGTGACGCAAGCA
GTTAGGCATAGACCTTTTCGCCTTTCAATCCGCCATATTGATTGAATACA
CCTTATCGGAAATTCCACCTCCTCGCGTTGTTTATGCTACGCAACACTTT
TTGGGAGGTAAACAAAGCGCGATATTGCGGTTTTCAGGCAAAAAGCCTTA
CAAAACACCCAAAATATTGATGCCAAAAGAGCCTCAAAAGGGCTGCCATT
GGTCCCATTTATGTTTACCTCCCAATTTCAACGGATCCATTTTTATAGCG
CGATTGTTTTTGTGGAATTTCCAACAAGGTGTATTGTATGCAAAAACTAT
GATGGTGGCCGAACATGCATAATTGACATTATACCGTGAGATTGGGTAAG
TTGCATCAGTGGAGGCTAACATGCATAAAATACAAATTTAAATCAAAACA
AAGATGGTAGAGTGTAGAGCTGCGAGCGGAGCTGCGTAGTTGTATTTTAA
TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAC
TAGAAATAATCAAATTCGCTCATCTCTTAGAACAAGCACTTCAAAAAACC
ATAACATTAGACATAAACTCAAGCTGAAAAATCACCCGCGAAGGTACAAT
GATAATCCTTTTTTAGCTGAGGGCGGTAAATTATTCTCCTGGGAATAGAA
CAGCCAAACGATCAAATCAAAACATTGATCTGAACCCGCTGAATGTGTGA
CGTCATAATTACTGTTTTCAGTTTGCGTGTTTTGAAAGTTGATGTGTGTA
CTTTGTCTTGGTGGAATTTTACTAAACTAAATCCAACCACGGCTTTTTCC
TTCCTCTATTTTTGCACACAATTCAAGATGGCGAATGGAAAGGCGAAAAG
GTCTATTGGGGTTGATAAACCAAAGGTTGCTATAATCCCCATGAATTGCA
TCTCCCAAATGATCTCTCTCTTGATACTTTAATCAGATTAAATTTGCCCA
AAGATTAAATTTCGCTAGCGAGAAAGATCCTGAAATTTTCTGGATTTAAT
TTTGCGAGTCACAGTTTTGAAAATTTTTGCGTGGATTTAATTTCGTGAGT
AAGCCTGAAAACAGCTGAAAAATAGCCATTTTTGCCACAAAATGGAGACT
TCAGACTGGTTTTTCCGCTGAAAATGTGATTAAAAAAATTTTGTGGTAGA
TTTAATTTTGCGAGTCAGAAATCATATACATTTTCGCAAGTTTTAATTTC
GTGAAAGATGCAAAAATTTGCGAAATCGTGAAATATAATTTCGCAAAAGT
TAATCTGATTAAAGTATGCAACGGGCTTAAGAACTGACATCTTGTTATTT
AGAATTTTCAAAAGACTCACTCTAGATCATTAAAAAATTGCGTCATTAGT
TATATCTTTGTGATATCTTTTTAGTTATATCTTTGTGATGCAAGAGGTAA
GGGCATTTTTCATTGATGTCCCTAGCGGTTTAGTCGCGCGGCTGAGGTCG
AAAAAAGTGGCTAGAAAATGATTTTCGTGATACACCTCTTAGATTCCACT
TTTTTCGATGGAAACTCTCGAATTAGTATGTGTAGATTACAAAATCAAAA
AGTTTCCACGATATTATCGTGCAAGTAACGAGTAATTGGCGATGTTTTGT
GTTTCCAGGCAAAATTGCAAGGCCTGGAAATTCATGATTTTTGGGAGGTC
TTCAAATTAAAAAAAGGCCTGTATCACATGATAGAGATCTTCAAACTGAG
CAAAAAAGTGTATTACAGCAAAGTCCCAACTTCTCTAGATCAAAAGTTAT
GGGCCTATTTGTGGTCAAAAAGGTGTTTAATTTTGCATAAATTAATGCAG
ATTGTGGGGAAATTCCCTGTTTTCCATCAGTTTTTTAAAAAGATGAAAAA
CAAAGAAAATTTAAGAATTGACTTTTTTAATATTTCAACACGAGTGATTC
ATTCACCTTAGAAGATCATTACAATATCAACAAGACGACTCTAAGTCGAA
AATTTCGCATATTATGTGAAAAAATAAGCCCAAATTAATGTTCAAAAACA
GAAATATTAATGCTAAAAAAAGAGCTTTATAAAAGCTTTAAAAATGGATA
AAATGATACAAATTATACCGCGTTGTTTTCTTATAAAAAACTTCTTATAA
GAAAAATAATTGTGCTCAAATATTCTGCCCCATCCCTTAATTACTTTGTA
ATATCTAATTGCCGAAGCCCAACGAACTTTAGTTCAATATTTATCAATTG
TATTCTTATAAAAAAAACTTTATCTTTTAAGAAAAAGAAATGTAATCAAA
TTCTGCCTCATCTTATAATTACTTTGCAATATCTAATTGCCGAAGCCTAA
TGAGCTTTAGTAGTTACATACTTCAATAGTTACTAACTGTGTTCTTACAG
AAAAACTTCTTATAAGAAAAATAAATGTATTCAAATTCTGCCCCATCCCT
TAATTACTTTGCAACATCTAATTGTAGCCAAATGGACTTTAGTTCAATAG
TTATTAATTAAATTCTTATAAAAAATTTCTTATAAGAAAAATAAATGTCC
TTTAATTTGTTTACGTAATTGCTGAAAAGAAATATCATTTGGATCAAAAT
TTGTTATAACAATATTCTTGCAAAGAAATCAGCGAAATAATTAGATCTTT
AGAAAGTTCTAGAACATTCTAGAAATCATGTGAGACAGGGAGATGTACTT
CTTGAAAAAAATATTCCGAGGACGCAGGCACGCACACAGAAGGCTATCGT
AATAATTCGCTAAGGCGAAATTAATAATTTTACAAAAATATTTATTCAAT
CGTAAGATATATTCCAGAGTTTGATTCTTGTCTCCTCTGCAGATTATATC
GAGAACGATTTTTTTAAAGACACAGCTTATTATTTCAAACTTTGAAGTAT
CAATTTAGACGAAATATTACTATTTATTTCTCACTTTTTAAAATAACATC
TTTTCACGCAAAATCCACTATATTTCCTTGTGACGTCATCAACTACTCAA
TAATTCTACCAGACTAATAGTACTAGGAGATCTGTTTGAGTCCCGATAAA
AGTTTGGAAAAATATAGCTACGAAATATTTAATTAGGAAAAAAATACTTC
ACTCTTAATTATCTTTTCAACAATAAGAAAACTACTATCTAATTCAAATT
CTATAAAAGAGTTATAACCATTCTTTTCTCAGCTCCAGATAATTGAAACA
CAACTTTTCCCCTGCTTTTTTATTCTGAATAGCAAACTCAGTTTTTTTGA
AAATTAAAAATTTCTCCCTATTTTCCTTCAGATAATATGGCATGTTTGCT
ACTTACAAGGAAGCTTTATGGTCAACCTGTGGTTCGGTCTTTCACGCAAA
ATATCTCAAATGTGTCCGTGAAAACAAGATTGTCATTGCCAACTAGAAAG
CCACAACAACTTGTGACGAGAACGTTCCAAACAACATCAAAGGTTCATGC
AGCACCTCTTGGACCATTACTTGTCAAGTTATCATCGCCTTTATATCGCT
TCGGATTTCTCTACCTTGGTCGAAGGCTTCGTCAGTATTGGAATAATTTA
CCACCTGGTAAACGAGCAAAGTATACTAAAATATTTTCTAATAGTCGGAA
TGCAATATTTGGAGGTGTTTTTGCATTCGGTGGTTTATCAGGGTTGTATT
ATATTTCACATTTAGAAGAAGCGCCGGTGACGCATCGTAAACGGTTTATG
ATTTTGAATCATTCACAACTAGAGAAAGTTGCAGCCTTTGAATGGCAGAA
AATGGATGAGATGCTTGAACGAAAGAAATTGCCACCCCATCATCCTCTAT
TTAAGAAAGTTTACAAAATCGTGAAGCGAATACTGATAGCCAATCAATCG
AGAGAAGTGAATGGGATAAAATGGGAGGTCAACNATTCAAGAAGGTTTAC
AAAATCGTAAAGCGAATACTGATAGCCAATCAATCGAGAGAAGTGAACGG
GATAAAATGGGAGGTCAATGTTGTTGATTCTGATGAAGTCAACGCATTTG
TTTTGGCCAATGGTCAAATATTCGTCTTCACTGGTATACTAAATGAAATG
GAAAATGAAAACGAACTAGCAGGTGTGCTCGGTCATGAAATTGCTCATGC
TATTATGGGACATTCTGCCGAGCTTCTTAGCTTAGCAGGATTTTTTAATG
TATTTTCACTTGCGATTTTGACGACATTATGGGCGGTCATCCCCACTGAT
ATCGGGGCGTTTGCCGCTTCACTACTGCAAAATACAATTGAAGACTTGAT
TATTAACTTACCTTACTCACGAAAATTAGAGCAAGAAGCGGACGAAGTTG
GTCTCTTACTGGCCGCGCGGGCGTGCTATGATGTTCGCTACGTGCCGAGA
TTCTGGCATCGAATGCATCTAAAAGACGGGGGTGGTAGTGACGCCATCAT
GAAATGGTTTTCAACTCACCCAACAAACGCCAGTCGTGTTAAACAAATTG
ATGAACTGATGCCGGAAGCTCTGGAGTTGAGGTCTTCTTTCCAATGTCCA
CAATTACAAGAATTCTATGATGCTTCTCATAGGTTTAGACATGTTCGATT
GATTTGACCATTTTTAGCAGTGAATATTCTGAACTTTCTGAATTGATTGA
TTGATGATTTAGTATTTTACAAAACTTTGTAACACTCGGTGGATGTAATA
TTTTTGATATATTCTCTCAGTCGAAAATGCCTTCATTTACTTCACGTAGG
CTTTTCATCAATTCGCCGATGATTTTACATGTTTTTGTGAGGCTTCTGTA
AACAAACTTTCAGTAGTAGCGTGGTGACTTAGGCAAGTACCTCACCAAAA
AGAAGGATTTTTTCATTCTGTAACTTACTTCTCAGAGAAAAGGCCGTGAA
ATTGCCTGCTTCGTTAACACTTCCCCTTTTCCCTGCTAACACGCTACTGC
TAACTCTCTAAAATAGTATTATAGTTTAAAGTAAAGGATAGCATATTTAG
AATATTTTGTTCAGTTTCAATTCAATTTTGTACCATTTTGTAAATTTTAT
GATTTTTGTATAGGCCTAGGTGTTTTTACACAACGTGATGTAGTGGGAAT
CTAAAAAGAGATAAATGTTTTTTTTCTAACTCATTCCCGGAT Coding sequence (CDS) from alignment at sc0000436:175570..181461- >TCONS_00022920 ID=TCONS_00022920|Name=TCONS_00022920|organism=Clytia hemisphaerica|type=CDS|length=2370bp|location=Sequence derived from alignment at sc0000436:175570..181461- (Clytia hemisphaerica)
GTCAATGTTGTTGATTCTGATGAAGTCAACGCATTTGTTTTGGCCAATGG
TCAAATATTCGTCTTCACTGGTATACTAAATGAAATGGAAAATGAAAACG
AACTAGCAGGTGTGCTCGGTCATGAAATTGCTCATGCTATTATGGGACAT
TCTGCCGAGCTTCTTAGCTTAGCAGGATTTTTTAATGTATTTTCACTTGC
GATTTTGACGACATTATGGGCGGTCATCCCCACTGATATCGGGGCGTTTG
CCGCTTCACTACTGCAAAATACAATTGAAGACTTGATTATTAACTTACCT
TACTCACGAAAATTAGAGCAAGAAGCGGACGAAGTTGGTCTCTTACTGGC
CGCGCGGGCGTGCTATGATGTTCGCTACGTGCCGAGATTCTGGCATCGAA
TGCATCTAAAAGACGGGGGTGGTAGTGACGCCATCATGAAATGGTTTTCA
ACTCACCCAACAAACGCCAGTCGTGTTAAACAAATTGATGAACTGATGCC
GGAAGCTCTGGAGTTGAGGTCTTCTTTCCAATGTCCACAATTACAAGAAT
TCTATGATGCTTCTCATAGGTTTAGACATGTTCGATTGATTTGAATGGCA
TGTTTGCTACTTACAAGGAAGCTTTATGGTCAACCTGTGGTTCGGTCTTT
CACGCAAAATATCTCAAATGTGTCCGTGAAAACAAGATTGTCATTGCCAA
CTAGAAAGCCACAACAACTTGTGACGAGAACGTTCCAAACAACATCAAAG
GTTCATGCAGCACCTCTTGGACCATTACTTGTCAAGTTATCATCGCCTTT
ATATCGCTTCGGATTTCTCTACCTTGGTCGAAGGCTTCGTCAGTATTGGA
ATAATTTACCACCTGGTAAACGAGCAAAGTATACTAAAATATTTTCTAAT
AGTCGGAATGCAATATTTGGAGGTGTTTTTGCATTCGGTGGTTTATCAGG
GTTGTATTATATTTCACATTTAGAAGAAGCGCCGGTGACGCATCGTAAAC
GGTTTATGATTTTGAATCATTCACAACTAGAGAAAGTTGCAGCCTTTGAA
TGGCAGAAAATGGATGAGATGCTTGAACGAAAGAAATTGCCACCCCATCA
TCCTCTATTTAAGAAAGTTTACAAAATCGTGAAGCGAATACTGATAGCCA
ATCAATCGAGAGAAGTGAATGGGATAAAATGGGAGGTCAATGTTGTTGAT
TCTGATGAAGTCAACGCATTTGTTTTGGCCAATGGTCAAATATTCGTCTT
CACTGGTATACTAAATGAAATGGAAAATGAAAACGAACTAGCAGGTGTGC
TCGGTCATGAAATTGCTCATGCTATTATGGGACATTCTGCCGAGCTTCTT
AGCTTAGCAGGATTTTTTAATGTATTTTCACTTGCGATTTTGACGACATT
ATGGGCGGTCATCCCCACTGATATCGGGGCGTTTGCCGCTTCACTACTGC
AAAATACAATTGAAGACTTGATTATTAACTTACCTTACTCACGAAAATTA
GAGCAAGAAGCGGACGAAGTTGGTCTCTTACTGGCCGCGCGGGCGTGCTA
TGATGTTCGCTACGTGCCGAGATTCTGGCATCGAATGCATCTAAAAGACG
GGGGTGGTAGTGACGCCATCATGAAATGGTTTTCAACTCACCCAACAAAC
GCCAGTCGTGTTAAACAAATTGATGAACTGATGCCGGAAGCTCTGGAGTT
GAGGTCTTCTTTCCAATGTCCACAATTACAAGAATTCTATGATGCTTCTC
ATAGGTTTAGACATGTTCGATTGATTTGAATGGCATGTTTGCTACTTACA
AGGAAGCTTTATGGTCAACCTGTGGTTCGGTCTTTCACGCAAAATATCTC
AAATGTGTCCGTGAAAACAAGATTGTCATTGCCAACTAGAAAGCCACAAC
AACTTGTGACGAGAACGTTCCAAACAACATCAAAGGTTCATGCAGCACCT
CTTGGACCATTACTTGTCAAGTTATCATCGCCTTTATATCGCTTCGGATT
TCTCTACCTTGGTCGAAGGCTTCGTCAGTATTGGAATAATTTACCACCTG
GTAAACGAGCAAAGTATACTAAAATATTTTCTAATAGTCGGAATGCAATA
TTTGGAGGTGTTTTTGCATTCGGTGGTTTATCAGGGTTGTATTATATTTC
ACATTTAGAAGAAGCGCCGGTGACGCATCGTAAACGGTTTATGATTTTGA
ATCATTCACAACTAGAGAAAGTTGCAGCCTTTGAATGGCAGAAAATGGAT
GAGATGCTTGAACGAAAGAAATTGCCACCCCATCATCCTCTATTTAAGAA
AGTTTACAAAATCGTGAAGCGAATACTGATAGCCAATCAATCGAGAGAAG
TGAATGGGATAAAATGGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022920-exon-sc0000436-1575043694:181252..181461 | TCONS_00022920-exon-sc0000436-1575043694:181252..181461 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1575043694:176785..177380 | TCONS_00022920-exon-sc0000436-1575043694:176785..177380 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1575043694:175570..176698 | TCONS_00022920-exon-sc0000436-1575043694:175570..176698 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1510915933:181252..181461 | TCONS_00022920-exon-sc0000436-1510915933:181252..181461 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1510915933:176785..177380 | TCONS_00022920-exon-sc0000436-1510915933:176785..177380 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1510915933:175570..176698 | TCONS_00022920-exon-sc0000436-1510915933:175570..176698 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1491911889:181252..181461 | TCONS_00022920-exon-sc0000436-1491911889:181252..181461 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1491911889:176785..177380 | TCONS_00022920-exon-sc0000436-1491911889:176785..177380 | Clytia hemisphaerica | exon |
| TCONS_00022920-exon-sc0000436-1491911889:175570..176698 | TCONS_00022920-exon-sc0000436-1491911889:175570..176698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:175570..181461 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001915 | Peptidase_M48 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
Blast
BLAST of TCONS_00022920 vs. Swiss-Prot (Human)
Match: OMA1 (Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 2.813e-68 Identity = 121/336 (36.01%), Postives = 202/336 (60.12%), Query Frame = 3
Query: 348 RTFQTTSKVHAAPLGPLLVKLSSPXXXXXXXXXXXXXXQYWNNLPPGKRAKYTKIFSNSRNAIFGGVFAFGGLSGLYYISHLEEAPVTHRKRFMILNHSQLEKVAAFEWQKMDEMLERXXXXXXXXXXXXVYKIVKRILIANQSRE-VNGIKWEVNVVDSDEVNAFVLANGQIFVFTGILNEMENENELAGVLGHEIAHAIMGHSAELLSLAGFFNVFSLAILTTLWAVIPTDIGAFAASLLQNTIEDLIINLPYSRKLEQEADEVGLLLAARACYDVRYVPRFWHRMHLKDG-GGSDAIMKWFSTHPTNASRVKQIDELMPEALELRSSFQCPQL 1349
R F T+ + AAP+ PLL+ + P+ + + +GR +R++W LPP K+ + ++ +F G+ +FG L ++Y +HLE +P+T R + ++L Q ++ E++ E + L + V +++ ++ N+ ++ I W ++VVDS +NAFVL NGQ+FVFTG LN + + ++L+ +LGHEIAHA++GH+AE + + + LT +WA+ P D A +Q+ +++ + N PYSRKLE EAD++GLLLAA+AC D+R FW +M D G + +W STHP++ +RV+ +D L+P+AL++R CP L
Sbjct: 134 RNFHTSPRFQAAPV-PLLLMILKPVQKLFAIIVGRGIRKWWQALPPNKKEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLSELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQMEFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPL 468
The following BLAST results are available for this feature:
|
