TCONS_00022922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022922
Unique NameTCONS_00022922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022922 ID=TCONS_00022922|Name=TCONS_00022922|organism=Clytia hemisphaerica|type=transcript|length=3167bp
TATTTTCTGTAgttagtttttgttgttttttttctttttatatatatttt
ctttttatatatattttcatttcttagTCATTATTGCTCATTTTGTAAGC
TCATTTGGGGTTCCTTNATTACTTTATCTCAACATTTACATGTTACAATG
TTTTCTTTCGTTTCTAgttaaaaatataattcttgaaTCATTCAAGCTTT
GTTATCACAAAGAGAAGAATACAAGAAACTTGAAACAAGATGGACTACAT
GGCAGACGGTTTAAATCCAATGTCTGAAGAGGATCAACTTCGATTGAAAA
AACAACGAGAAAGAAACAACAAGATTAGTAAATTGATGGGAGATTATTTG
CTGAAAGGCTACAAAATGCTTGGCTCTACTTGCAATAAATGCCAGGCGAT
ATTATTACGTGATCGACAAGGAGAGGATTATTGTGTGGGTTGTGTAGAAG
TTGATGCACCGCCTCAATATCAATCAAATTCATTATCATCTCAATCAAGA
CCAAATACAACAAGCCAAATCACAGggGGACGAATAGAGTTAGATAGTCG
GTCGACACCAACATCTAGAAACGAGCCAACCAACTCAACTGCATTCAGTA
ATAGCGAAAGTGAGAAACAGACTGTTGAACGTTCTATTGAATGTATTTAT
GCTCAAATTGCATGGGCTAATCATAATTTATCGATTCAAGAAGCCAATTT
GGAGCAGAGAAATcaattgattagtttcttacgAAATTGTTTTGAGACGA
TTGAATGTCTCAAGAAACATCGGTGATCAAACATCCCTCATCTGCCAAAA
ATGAGGCTTATAACAGAAAATTTCATCTCAAACTATGTGAAATTGGTTTT
ATCTGACTTCGAAATCGATCGAGTGAACACATGAATTTCCCGTAAACTCT
TCTAAAAGGAAGACTGAAATAAACTTGTCTTTATGTTTTAAAAGATTTGT
TCATTGTCTTGGAACTAATATAAAGTAATGATTAGTGAAAATGACTTTTC
GGTTAGAATTCTTCACTATATGGTTTACATATTTGCTTTTATAAAATTAT
AAGATTACATTTGTGAATTTAatcaatttaaaattgaaattgaaagagtg
atatcataaattttatttgctttctGGTAAATTACTTATCATACCTTTCT
TcaatttgttttaaaacaaaGTTTGGTCAAAGAATTGTTATACTACTTTT
TTACTAATTACAAACTCGGTAATTAAATATAGACTGTTTTATTTATGCCG
CTTTCTCAATTCGATCAGCGATAAAATTGTCAACTTGTCCTTCCACAATG
AACATGGGTACATCACCTAACGAACACAACATTGTATGAAATTCACCCAC
ATTGAATCTCTCACCCAGACTCTCTTCTGCTTTCTTACGATACTCAAGGA
ATTTATCTTTCCCAAACAGATAACATAATGCTTGGCCAGGAAGAAACATA
TATCTGAAGACTTCATTTCGAAGCTCCAACTCATCACAACAACAATTATC
CAGCATGAATTGGTAAGCCTTCTCTCTCGACCATCCATACAAATGAAGAC
CAACATCCACCACATAACGACAAGCTAATTCCATTTCTCGTGATATACTC
CCAATATGATCATAAAGATCGTCATAAAGTCCTAGATCGTGACCGATATG
TTCTGCATAAGTAGCCCAACCTTCATGATAAGCTGACCTCATACCAACGT
GTGCCGGTAGATCCCAGTATCTCAGTTCATCAGCGAAACGTCGGTAATCG
CGAAGGTCAGATTCTGCAGCAAGAGCAAGTTGGATGTGGTGACCTGGTAA
AGCTTCGTGAAGAATGATTCCTGATACATCGTACTTCTTTCTGCTTTTTG
GTGAAAATGTGTTCAAAATGAAGAGCCCTNTGAAGAATGATTCCTGATAC
ATCGTACTTCTTTCTGCTTTTTGGTGAATATGTGTTCAAAATGAAGAGCC
CTGGCCGGTCTTTTTCCACATCTCCAGCGACATAAGCTCCAACACAATAA
TGTTTTTCAATCTCCACCGGTGCTGGAACGACTTTGTAGGACAATTTTGG
AAGCTTAGAAAAGACTTTCGGTAGAAGGCTGTAAACGCGTTCACTCTCCT
TTTCGTAGACTTTCATCATCTCTTCGCGTGATGAAAAGGAGAATTTTGGA
TCTGTTCTCAGGTATTCGATGAATTCACGTTGTGTTCCTTCGAACCCGAC
TTTCTTCTGTTGCTCTTCAAGCTTCGGCTTCAACATTTCCAGTTTCTCCA
TTCCCAAATCAAATATTTCTTTAGCAGTAGTAGCACCATCGGTATGGAAA
CGAACGTATGATTCATAAACTTCAGGTGGTAAACCAGGACCTGGTTTTGT
TTTTGGTATATAGACATCACGAATGAAAATAGCCAGTCTTTCATACGCGG
GAAGAACAAGTGTGGTCAACAAATGATTGACATTATCAACAAAATTGCTC
CAGTTTTCATCAGACAGCTTCGTTGGTTTATCCTGGAATGGCTGAAATAA
AGTTGATTCCTCCTTTGGCCTTTTACAGAATTCTAACAACATTGCTGGGT
AACATTCAACAACGTTGATAGCAACTGTCTTCTCTAAACGTATTCCTTCT
TTCATCAGCTCGATCATTTGATCGATTTGGATGCAAAACTGGTGAAGGCG
TCGTTTGATGTTTTCTTGACCCTCTGTTGTGTCTTTGGGCATCCACGAAA
GGAGCCTTGGAAATTTTATATGAGGTCCGTCAGTAGGGTTCAAAGGACAG
AGATAAGTCTGATGTGTcaatccttcaagaaatgtTTCAGTATCATGCTG
AAGATAATCTAAATGAATTTGACATTCATTTGATGGAGGGGTTTTCTCGG
CCAATTTGCGGATTTTGTGAGCTTCTGCTAACCATGTTTTGGCATCATCT
CTACGTCGGAGATATCCGTTTAAACTCATGTCCATTAATTGGTCATCGTG
TTTGTTCTCTCCGACAAATGTGGCGAATTCCGGAATATCTAATAAACGCC
AACTCCAATAATTGTCAATTGTATTGTTTAGTAGTTCATTTATATccatc
ttttgaaatttcagtaCTTCTATGTGTCAGAGATCTAACTGCTAGACGTA
CCTCTTTTAAAAGCTTCTCTGTTAAATGCTTCGTCTCTTGAGGTTTATCC
TTCTGATGACCTCCTTA
Run BLAST on NCBI

transcript from alignment at sc0000436:221538..228844-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022922 ID=TCONS_00022922|Name=TCONS_00022922|organism=Clytia hemisphaerica|type=transcript|length=7307bp|location=Sequence derived from alignment at sc0000436:221538..228844- (Clytia hemisphaerica)
TATTTTCTGTAGTTAGTTTTTGTTGTTTTTTTTCTTTTTATATATATTTT
CTTTTTATATATATTTTCATTTCTTAGTCATTATTGCTCATTTTGTAAGC
TCATTTGGGGTTCCTTNATTACTTTATCTCAACATTTACATGTTACAATG
TTTTCTTTCGTTTCTAGTTAAAAATATAATTCTTGAATCATTCAAGCTTT
GTTATCACAAAGAGAAGAATACAAGAAACTTGAAACAAGATGGACTACAT
GGCAGACGGTATGCTCCTCTTTTTATTTTCAATAAATATAGTTTACCAGT
GAACTAAATTTATCTGTTGTTACTGGTTGTTAGGAAATTTTAGTACGGTT
GATACGATATTTTCAGTTCTTACAAAGTAACTTACTTTTTAAAAATAGTA
CTTTCTTCAACGTTGATTTATGCACCGCTGCTTCGTTGATTTGGTATTTC
GCATTGCAAAATTTGAATAATCGCCCATGTATTTTATACAGGTTTAAATC
CAATGTCTGAAGAGGATCAACTTCGATTGAAAAAACAACGAGAAAGAAAC
AACAAGATTAGTAAATTGATGGGAGATTATTTGCTGAAAGGCTACAAAAT
GCTTGGCTCTACTTGCAATAAATGCCAGGTAAAAAGCTACCTTTTTATGG
TCATCTCTGTCTGAACCGATTTTAAAATCGTTGCAATAAACAAACCTTGA
CCAGGGTTTTATCGATGTTCTGAGAACGAGTAAACATAACAAATTTTAAG
AGTTCATGTTCTAAAGTTGTGCACCGTTTTAAAGTGTTGTTTTTTGTCAG
GAAGAAAAGGAGGACTTTCGAAACTTAATTCTGTTTTCTTCTTAGCCTTT
GAAAATGTATAAGATTAAAATCGAGTTATTTGCCCAAACTATCTCATATT
TTATCAGATGGTAACAAGTGATACTTTTATGGACCTACCTGGTTATGCAT
TTAACACATATATAATTGATATCTACATAAGCGTGACCATTAAACAATCA
TTCAGAACACAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGATGTATGCTT
ATTAATAGTGATTCTTATAGATAAACATGCGTTTTTTGAGCCAATAAATT
TTTTTTGCAAAAATTTGCTTAAGCCATCTTTTACCTATGATGGTACCTTA
CTTTCATGCAAAAAATCAGAAAAAATTTACGACCTAATTTTTCACAAAGT
CCAAAAAGCCCGCTTTTTAGCCGTTTTTTGGCCCAAATTTGCCCAAAATT
TTTTTTTTTGAAAATCGGGCTCCGTCACATTCGAGGGTTTATAGTTATGC
ATCTTTGTGCAATAAATCAGAAAAAACTAACCAGCCAATCACGAGGAAAG
CTAATAACGAACGAACGAACGAACAGACGAGCGGACGAACGGACAAAGGT
TAATTTATAGGACCTCCACCGGGGTAGGTCCAAAAAAATACGACTAGTCT
CTTGTCAGACTGCTGAGGTATTGTCATCTGTCGTTCTGCGATTCAAACTA
GACCTCAGTCTCCCATAATAGCTGTCTTGCTTTAACTCGTTTGGGCTCGT
TCATTTCCAACTTTTAACACTAGGCGATATTATTACGTGATCGACAAGGA
GAGGATTATTGTGTGGGTTGTGTAGAAGTTGATGCACCGCCTCAATATCA
ATCAAATTCATTATCATCTCAATCAAGACCAAATACAACAAGCCAAATCA
CAGGTTTAATTTATCGTTCATTGTACTTACAAGGGCTTGCAAGGTGTTTT
TCTTCAAAAACTCTTCAAGTTTGGTTTTAGATTCTTTAAAAAGCATGGCA
TGGACCAGGGGTTTAAGTACCCCCTAAGAAAATAGGTACCCCCTGAATTT
TAGGTACCCCCAAAAAACAGACGTTAGTAGGTACCCCCTGTGATTGGTAC
CCCCTGTGACTTGAGTATATGTCAAGAAATGAAAAAATTGTATATTTTTA
CAATTAAAAAGAATAATGATAGTTAGGTAAAAGCAAGATATAAAATATAG
TTCCCAAGCCCCCAGACCTTACTGCATAAAAGTTAGATACCCCCAGAGAT
CATAGGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCC
CCCCCTGCGGGCTGGGGGGGGGGTTCATGCCATGAAAAAGGCTACAAATC
TTTGACAAATTTTTGACATTGAAAAGAGGAAGTAAAACTTTTATGAGGGA
TCGGTTTTTCATAATAACGTTTTGAAGAAGATAATCTCTTCAAAAAATCA
CATTTCTTGGGAAAAACTTCAAGGGAAGTTTATACAGGGAAATGGCAATA
CAAATTGGTTACCAAAATAACTTTAATTCTGTAATTTTCCTGAAATGAAG
AAAGAGTTCACCTGATTTGCAAAATGAAAAATAGTAAATAAAAACATTAG
AAGGAGAAGCGTCATCATTTTGGCTGATCTTTAAGCCAATTTTTCTTCTC
ATAAGGGTTAATCGATTGATTTCTTTTTGGACGTGGATTTATCAAACCTT
GCTCCATAACTCGAAATTTCCTTCACTCGAAAAAATTTGTGTTCCCCGTA
CGTGCTCAATTTCTGGAGACTCAACTGTTTAATCTGTCCATACAAAGTTT
ATTCTCAACTTTAGTTGAGCTAGAATCTGACAATGTACGTGTGTATGTAT
CTATGTCTGTCCGAAAACTTTGGGACAGGCTGGAGACTTCAAAAATGGCC
AGATTTGGTTGAAATTTGGCATACTTGTTCATTGGGTGAATATCTAGGGG
TGTTTCTTTTCATTTTTTGAAAATTTTAATTTTTCAGAGGGCGTGGTCAC
GAGTTTTCACCAATACGAGGCTAAAACTTTGGGGCTGGAGACTTCAAAAG
TGGTTAGATTTGGCTGAAATTTGGCACACTCGATCCTTAGGCGAATCCCT
GTGGTGGTTTTTCATTATTTTAAAATTTCCATTTTAAGGGCGTGGTTATC
AGTTTTTAGTTGAAATTGGTTACAATTTTACAATTGGGCCTACGAATGAT
TTAAAAACACTGAAGTTGAGCCCAGTGCGGTTAGCACGTTCGACAGTTAC
GAATCACATAAAGTTAAATGATCAAAGCAAATCCCTAATTATTTTATTTT
TTCCATTTTTCAGGGGGACGAATAGAGTTAGATAGTCGGTCGACACCAAC
ATCTAGAAACGAGCCAACCAACTCAACTGCATTCAGTAATAGCGAAAGTG
AGAAACAGACTGTTGAACGTTCTATTGAATGTATTTATGCTCAAATTGCA
TGGGCTAATCATAATTTATCGATTCAAGAAGCCAATTTGGAGCAGAGAAA
TCAATTGATTAGTTTCTTACGAAATTGTTTTGAGACGATTGAATGTCTCA
AGAAACATCGGTGATCANTTACGAAATTGTTTTGAGACGATTGAATGCCT
CAAGAAACATCGGTGATCAAACATCCCTCATCTGCCAAAAATGAGGCTTA
TAACAGAAAATTTCATCTCAAACTATGTGAAATTGGTTTTATCTGACTTC
GAAATCGATCGAGTGAACACATGAATTTCCCGTAAACTCTTCTAAAAGGA
AGACTGAAATAAACTTGTCTTTATGTTTTAAAAGATTTGTTCATTGTCTT
GGAACTAATATAAAGTAATGATTAGTGAAAATGACTTTTCGGTTAGAATT
CTTCACTATATGGTTTACATATTTGCTTTTATAAAATTATAAGATTACAT
TTGTGAATTTAATCAATTTAAAATTGAAATTGAAAGAGTGATATCATAAA
TTTTATTTGCTTTCTGGTAAATTACTTATCATACCTTTCTTCAATTTGTT
TTAAAACAAAGTTTGGTCAAAGAATTGTTATACTACTTTTTTACTAATTA
CAAACTCGGTAATTAAATATAGACTGTTTTATTTATGCCGCTTTCTCAAT
TCGATCAGCGATAAAATTGTCAACTTGTCCTTCCACAATGAACATGGGTA
CATCACCTAACGAACACAACATTGTATGAAATTCACCCACATTGAATCTC
TCACCCAGACTCTCTTCTGCTTTCTTACGATACTCAAGGAATTTATCTTT
CCCAAACAGATAACATAATGCTTGGCCAGGAAGAAACATATATCTGAAGA
CTTCATTTCGAAGCTCCAACTCATCACAACAACAATTATCCAGCATGAAT
TGGTAAGCCTTCTCTCTCGACCATCCATACAAATGAAGACCAACATCCAC
CACATAACGACAAGCTAATTCCATTTCTCGTGATATACTCCCAATATGAT
CATAAAGATCGTCATAAAGTCCTAGATCGTGACCGATATGTTCTGCATAA
GTAGCCCAACCTTCATGATAAGCTGACCTCATACCAACGTGTGCCGGTAG
ATCCCAGTATCTCAGTTCATCAGCGAAACGTCGGTAATCGCGAAGGTCAG
ATTCTGCAGCAAGAGCAAGTTGGATGTGGTGACCTGGTAAAGCTTCGTGA
AGAATGATTCCTGATACATCGTACTTCTTTCTGCTTTTTGGTGAAAATGT
GTTCAAAATGAAGAGCCCTNTGAAGAATGATTCCTGATACATCGTACTTC
TTTCTGCTTTTTGGTGAATATGTGTTCAAAATGAAGAGCCCTGGCCGGTC
TTTTTCCACATCTCCAGCGACATAAGCTCCAACACAATAATGTTTTTCAA
TCTCCACCGGTGCTGGAACGACTTTGTAGGACAATTTTGGAAGCTTAGAA
AAGACTTTCGGTAGAAGGCTGTAAACGCGTTCACTCTCCTTTTCGTAGAC
TTTCATCATCTCTTCGCGTGATGAAAAGGAGAATTTTGGATCTGTTCTCA
GGTATTCGATGAATTCACGTTGTGTTCCTTCGAACCCGACTTTCTTCTGT
TGCTCTTCAAGCTTCGGCTTCAACATTTCCAGTTTCTCCATTCCCAAATC
AAATATTTCTTTAGCAGTAGTAGCACCATCGGTATGGAAACGAACGTATG
ATTCATAAACTTCAGGTGGTAAACCAGGACCTGGTTTTGTTTTTGGTATA
TAGACATCACGAATGAAAATAGCCAGTCTTTCATACGCGGGAAGAACAAG
TGTGGTCAACAAATGATTGACATTATCAACAAAATTGCTCCAGTTTTCAT
CAGACAGCTTCGTTGGTTTATCCTGGAATGGCTGAAATAAAGTTGATTCC
TCCTTTGGCCTTTTACAGAATTCTAACAACATTGCTGGGTAACATTCAAC
AACGTTGATAGCAACTGTCTTCTCTAAACGTATTCCTTCTTTCATCAGCT
CGATCATTTGATCGATTTGGATGCAAAACTGGTGAAGGCGTCGTTTGATG
TTTTCTTGACCCTCTGTTGTGTCTTTGGGCATCCACGAAAGGAGCCTTGG
AAATTTTATATGAGGTCCGTCAGTAGGGTTCAAAGGACAGAGATAAGTCT
GATGTGTCAATCCTTCAAGAAATGTTTCAGTATCATGCTGAAGATAATCT
AAATGAATTTGACATTCATTTGATGGAGGGGTTTTCTCGGCCAATTTGCG
GATTTTGTGAGCTTCTGCTAACCATGTTTTGGCATCATCTCTACGTCGGA
GATATCCGTTTAAACTCATGTCCATTAATTGGTCATCGTGTTTGTTCTCT
CCGACAAATGTGGCGAATTCCGGAATATCTAATAAACGCCAACTCCAATA
ATTGTCAATTGTATTGTTTAGTAGTTCATTTATATCCATCTTTTGAAATT
TCAGTACTTCTATGTGTCAGAGATCTAACTGCTAGACGTACCTCTTTTAA
AAGCTTCTCTGTTAAATGCTTCGTCTCTTGAGGTTTATCCTTCTGATGAC
CTCCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012884XLOC_012884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022922-exon-sc0000436-1575043694:228587..228844TCONS_00022922-exon-sc0000436-1575043694:228587..228844Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1575043694:228217..228353TCONS_00022922-exon-sc0000436-1575043694:228217..228353Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1575043694:225792..225921TCONS_00022922-exon-sc0000436-1575043694:225792..225921Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1575043694:223989..224231TCONS_00022922-exon-sc0000436-1575043694:223989..224231Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1575043694:221538..223936TCONS_00022922-exon-sc0000436-1575043694:221538..223936Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1510915933:228587..228844TCONS_00022922-exon-sc0000436-1510915933:228587..228844Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1510915933:228217..228353TCONS_00022922-exon-sc0000436-1510915933:228217..228353Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1510915933:225792..225921TCONS_00022922-exon-sc0000436-1510915933:225792..225921Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1510915933:223989..224231TCONS_00022922-exon-sc0000436-1510915933:223989..224231Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1510915933:221538..223936TCONS_00022922-exon-sc0000436-1510915933:221538..223936Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1491911889:228587..228844TCONS_00022922-exon-sc0000436-1491911889:228587..228844Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1491911889:228217..228353TCONS_00022922-exon-sc0000436-1491911889:228217..228353Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1491911889:225792..225921TCONS_00022922-exon-sc0000436-1491911889:225792..225921Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1491911889:223989..224231TCONS_00022922-exon-sc0000436-1491911889:223989..224231Clytia hemisphaericaexon
TCONS_00022922-exon-sc0000436-1491911889:221538..223936TCONS_00022922-exon-sc0000436-1491911889:221538..223936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:221538..228844 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.3694	35.8912	37.7811	38.4544	5.41575	4.12565	8.61733	8.78057	8.4939	5.86793	4.20875	5.2872	4.35714	4.18263	4.21822	4.37313	6.9928	5.23561	2.43063	2.97527	5.11895	5.08914	15.9181	15.5311	5.21355	5.58356	5.59852	4.48141	7.45768	8.45844
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010281DUF885
Blast
[Close]
BLAST of TCONS_00022922 vs. Swiss-Prot (Human)
Match: SSA27 (Sjoegren syndrome/scleroderma autoantigen 1 OS=Homo sapiens GN=SSSCA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.101e-17
Identity = 54/193 (27.98%), Postives = 90/193 (46.63%), Query Frame = 3 
Query:  267 PMSEEDQLRLKKQRERNNKISKLMGDYLLKGYKMLGSTCNKCQAILLRDRQGEDYCVGCVEVDAP-----PQYQSNSLSSQSRPNTTSQIT---------------------GGRIELDSRSTPTSRNEPTNSTAFSNSESEKQTVERSIECIYAQIAWANHNLSIQEANLEQRNQLISFLRNCFETIECLKK 767
            P +E +   L+ +RER ++IS+LMGDYLL+GY+MLG TC  C  ILL+D+Q + YCV C E+D+      P   + +  SQ+R +  +  +                     G    L +   P +   P N+   + +++           +  ++ WA+  L     +LE   QL   +R C E +  L++
Sbjct:   15 PPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTA----------LLQKLTWASAELG-SSTSLETSIQLCGLIRACAEALRSLQQ 196
The following BLAST results are available for this feature:
BLAST of TCONS_00022922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSA271.101e-1727.98Sjoegren syndrome/scleroderma autoantigen 1 OS=Hom... [more]
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