TCONS_00022925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022925
Unique NameTCONS_00022925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022925 ID=TCONS_00022925|Name=TCONS_00022925|organism=Clytia hemisphaerica|type=transcript|length=797bp
GTTGTTATAGAGGCCTGAATTTTAATTGGTTTACAAatgATAGAAAATGA
TGAcaaatgttttgataaaaactgCTCGATTGAAATCATTGTCACAAGTT
GGTAGGCAACTGACAAGACCCTTCTACAGCTGGTTGATCGAAGTTTTTAA
CAGTAAAGATGAAAAGCGTGTGAAAGAAATTGGTGCTGATAGAGCAGCAG
GTGAATGGATCATACGGAACGGTGGACAAGTCAAATTTGCATCCAGCATC
ACACTTGCTACCAACTTAACCTCCTTGCCGTTCAGTAAAAGCCCACTGAT
AGAAATACACGCCAAAGATGTAGCTCTAACCAATTCTGGTCTCAGACATT
TGGAAGGACTGGAACATCTTGAATGGTTGGATTTGAACGGTTGTAAACAC
ATCTCAGATTTGTCTCCTCTTGAAGAAGTCATGGACACCCTCAAACATTT
AGATATCGGCAATTGTGCGGGGCTATCAGATGTTTCACCCGTTGCAAAAT
TAACGAAACTACAGAAGTTGGTTTTAACCGGTACGTTGGGCGGTGAAAAA
AGGTCGGGCGTTATCGAAACGTTAAAGAAGACTCTTCCGGACTGCGAAAT
TGTAGACTGAATCTGAatgaatgtttttttgtttcaatattttgtaatca
attttttttaatagagaatataattaaattttggaaatattgATACATCT
TTTCTACATTCTTTGAACTTTGTCCATCATAGTGTTTtagagtttaaaaa
aatattcagaatTGTTTGATGAATATGACTTAAAACAAGAATACGga
Run BLAST on NCBI

transcript from alignment at sc0000436:247087..250654-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022925 ID=TCONS_00022925|Name=TCONS_00022925|organism=Clytia hemisphaerica|type=transcript|length=3568bp|location=Sequence derived from alignment at sc0000436:247087..250654- (Clytia hemisphaerica)
GTTGTTATAGAGGCCTGAATTTTAATTGGTTTACAAATGGTAAACTTTTT
TTTGTTTGTCTTGTGAATCCTAATCTAACCTAGAAAAATTTCAAGCCTCT
GAAGATTTTAACTCGTTAAGATGATTGATTTTGAATTATTACATAAAAGT
CTAATTTAATAACAGACTAAATTTATATTGCTTTCAGCAAAAAAATTTTT
TTGATAATTCCTTACCCGAAGAATTATGAAGTATTCATTTATTTCGTTTA
GATAGAAAATGATGACAAATGTTTTGATAAAAACTGCTCGATTGAAATCA
TTGTCACAAGTTGGTAGGCAACTGACAAGACCCTTCTACAGCTGGTTGAT
CGAAGTTTTTAACAGGTAATTCGTATGATATTCAATTTTTTTTAATTAGA
AATTTTAGTAATTATTAGTCCAAAAAAACTCCCTGAGTCGTTTATAGTGC
ATGTAATACAGTAATATGGGTGTAATATGATAATACCATAATTGTTACGG
GATTTAGTTTGTATAACCTACAATTTACCATTATTTTTGCTTATTTGCTT
ATGTCTGAATTAGTCGTCTAGTTTGCTGACTATCTTCCCGGTGCGCCACA
AAAAAGTTTCTCTCTTTGAAACTGATTTTCTCGAAATCAAAAATTTTTAA
AAGAATCATTCCTATTGCATTGGAAAGAAGAAAGATAAACTTAAATTTTG
AGGGGTCATTTAATAAATTCGGTTCATTAGATCAAAAGTTATGCTCAATT
GAAAAACAAAGTTACTTCAGAAAGTGCCCGAAAACGTTAAAAATTGACCT
ATCAAAGTTTTATTTTAAAACTAGCTATCGCAATAGGCTTTACATGATTA
AGAACATTTTTCAGTAATCAAAAACGTAAATTTTGAAACTGATGGGTCAA
AAGGGTTTAGAGTTTTCATCAAAATCATTTTAATTTACTTTTACCGAGAT
TTTCTTCAGATTTTTGGATAAAGTCTATATGAAGGCTGGATGTACCTCGA
AACCAATATTTGATGTATATTTCTGAATTTTACAAGATCTTCTGGCTTTT
TTCGACAAATTTTCTTCCTTTTAATGTACTTCAACCATCCTTTATATAAC
AAAAGGTCATTTAGACAACTAATTATAATTTTTGATGACTAAAACGAAAT
TACTGATGCATCCTGTAATTATGCTTCTTTTTGATTTGATTGGTCAATTT
TTAACGTTTTTGAGCACATTCAGAAAGTAAATTTTTTATTCGATTGAGTA
TAACTTTCCATCCAGTTCCATCTAATGAACCAAATTTAATAAATGACCCA
TCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGGGATAGGAATGGTTCT
TTTAGAATTTTTAGATTTCGAGAAGTAGTTGATTGATTTTCACTATTGAT
AACCTGTTTTCGAGGAAGGTCGTGTATTTTGAAAACTCTATCCACAATAA
CGTCATATTTTACAAAAAAGCTTGGGGTTGGACTTTAATCTTCCTTTTTT
CTCATTTTACAGTAAAGATGAAAAGCGTGTGAAAGAAATTGGTGCTGATA
GGTAATGAAATCAAGCTTTTACTTAAGCAGAATCGAGAATGTTAAAAGCG
AGTTTATGTATTTGCACAACACTTTTGAGGACGGTAAAGTGACTGAAGCG
ATTTGGAAAAACCCGCAGTTCTGACCGGCAAAATCGAGGACGGTAAAAGT
GCTGATTTACCGTCATCCTCAGTTGGGCATGATCTAGTCAAATTAGAACC
TTACCGTCTCCGTCGCTGAAAAACACACATACATAAACTCGGTAAAGTTT
CGCTTACGGTAGATTGACCCTCTTTTTGTTCAACTTCTTGATTGGTCTTC
AAACTTGAACTTCGCTGTGACCACAGTGTAATTACGACAAATTATTTGTA
TAGTTATTTGCAAACTGATAAAATATTTTCCTTTTCGTAAATTTGCAGAG
CAGCAGGTGAATGGATCATACGGAACGGTGGACAAGTCAAATTTGCATCC
AGCATCACACTTGCTACCAACTTAACCTCCTTGCCGTTCAGTAAAAGCCC
ACTGATAGAAATACACGCCAAAGATGTAGCTCTAACCAATTCTGGTCTCA
GACATTTGGGTAAGAATTTCACAGTAGGATTTCAGGCTAATCTATTCTAA
CAATCTTTTGCTTGTATTGTCATTTGCCTAGAATGAAAACCCTGAAAATT
ACTACCATTCAAGGATCATTCCTACCTTAAAGTTATCTCCTCGCAAATAA
CATGAAGGTTAGTCGATTCTAGAAAATGCATCAAAATTCAAATCTATGGA
ATTCTTGAAAAATAAGTAGTAAGTAGTGTCACTGTGAGTTTTCTTACCTC
ATCTCTTACAGAAGGACTGGAACATCTTGAATGGTTGGATTTGAACGGTT
GTAAACACATCTCAGATTTGTCTCCTCTTGAAGAAGTCATGGACACCCTC
AAACATTTAGATATCGGCAATTGTGCGGGGCTATCAGATGTTTCACCCGT
TGCAAAATTAACGTAAGTTTTGGATACATGTTTTTATAAGCATTGCACTT
ATAAGCATATCTAGGCTCAGATACGGCAAAAATTTAAGCATATACACTTT
TTTATAAGCATACGGGAAAATCGGGTCGAGGCTTAGTATGGTTTGCAAAG
TCTCGCTCTCAGCCTTAATTTATGCTTATATGCTTGGACTTCGTTTTATT
GATTTTCTTTGGGTTCATGGAAATTTCGAATTTTCAAGTCATAACATTGG
TTCGGCCAAAAAGAATTACTAGTACATGTTTTTTTTTTGTAATTTGGCGC
CGCAGGCGAAAATCTTTGGTCTAAGAAAGTTAAAACAGCTTTAAAAGTAA
CCCTGAAAAGGTCAGCGTTTTAGAAAAGCTGCACAAGTTTTTTTGTATTC
AGCTTGGAGGTATGCTTAGCACTATGTTTGTTTTTTTACCGAGTTTGAGC
CAAAGTATGCTTATAAATGTTTACTTATCCTATTGGCTGTTTTTGGCTGG
GAATTTTAAGAATTTTCGGATGTAATTATCCTTTTAATAATATTATCATT
CTAACAAAAGGAGTAAAAAAAACATTAATAACCTCAAGAACCGTGTAGTT
TTTGTCTTGGGCTCGGTGGGAGTATTCATCCTTCTTTAAGTTGTTGTTGT
ACTAAGCATCTATACATGCATTATAACTCAGCTAGGATTTATTTGTGTTT
CGAAAACATCGTGTTTAGCTTGCATTGCAAAATAGCCCACATTTTTTATG
AAAGCTTTTTAATTTTTGCGTTTAGGAAACTACAGAAGTTGGTTTTAACC
GGTACGTTGGGCGGTGAAAAAAGGTCGGGCGTTATCGAAACGTTAAAGAA
GACTCTTCCGGACTGCGAAATTGTAGACTGAATCTGAATGAATGTTTTTT
TGTTTCAATATTTTGTAATCAATTTTTTTTAATAGAGAATATAATTAAAT
TTTGGAAATATTGATACATCTTTTCTACATTCTTTGAACTTTGTCCATCA
TAGTGTTTTAGAGTTTAAAAAAATATTCAGAATTGTTTGATGAATATGAC
TTAAAACAAGAATACGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012887XLOC_012887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022925-exon-sc0000436-1575043694:250616..250654TCONS_00022925-exon-sc0000436-1575043694:250616..250654Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1575043694:250290..250403TCONS_00022925-exon-sc0000436-1575043694:250290..250403Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1575043694:249104..249142TCONS_00022925-exon-sc0000436-1575043694:249104..249142Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1575043694:248546..248706TCONS_00022925-exon-sc0000436-1575043694:248546..248706Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1575043694:248143..248293TCONS_00022925-exon-sc0000436-1575043694:248143..248293Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1575043694:247087..247379TCONS_00022925-exon-sc0000436-1575043694:247087..247379Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1510915933:250616..250654TCONS_00022925-exon-sc0000436-1510915933:250616..250654Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1510915933:250290..250403TCONS_00022925-exon-sc0000436-1510915933:250290..250403Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1510915933:249104..249142TCONS_00022925-exon-sc0000436-1510915933:249104..249142Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1510915933:248546..248706TCONS_00022925-exon-sc0000436-1510915933:248546..248706Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1510915933:248143..248293TCONS_00022925-exon-sc0000436-1510915933:248143..248293Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1510915933:247087..247379TCONS_00022925-exon-sc0000436-1510915933:247087..247379Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1491911889:250616..250654TCONS_00022925-exon-sc0000436-1491911889:250616..250654Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1491911889:250290..250403TCONS_00022925-exon-sc0000436-1491911889:250290..250403Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1491911889:249104..249142TCONS_00022925-exon-sc0000436-1491911889:249104..249142Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1491911889:248546..248706TCONS_00022925-exon-sc0000436-1491911889:248546..248706Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1491911889:248143..248293TCONS_00022925-exon-sc0000436-1491911889:248143..248293Clytia hemisphaericaexon
TCONS_00022925-exon-sc0000436-1491911889:247087..247379TCONS_00022925-exon-sc0000436-1491911889:247087..247379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:247087..250654 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.8979	54.8161	14.971	15.8117	7.13285	4.41874	18.0409	19.484	17.1915	19.5478	18.8897	23.3534	14.5922	18.1764	27.75	31.9619	33.7524	37.5587	8.18851	6.57074	19.3	20.2381	29.0572	24.6977	4.62551	2.87496	15.1041	11.9012	19.2261	17.8407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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