TCONS_00022940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022940
Unique NameTCONS_00022940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022940 ID=TCONS_00022940|Name=TCONS_00022940|organism=Clytia hemisphaerica|type=transcript|length=434bp
TCTAAGAATTATGTTTGTTTAGTAAAAATTATAGtggaatttcttttgaa
aaattacatgAATTGCCTTTAGAAGCCTTTTAAACTTAACACTAATTTTA
AGGTTTGAGGGTATCGTTAAAATGTAGTTGGTAGCTATGGAAATGCTGCA
ATAAAGATCTCTTGTTCGTTTTTGCCTAATCAATCAGTCAtcgaaaaatt
tattattaCTAATTActtcaatttattttcagtcTATTTTTATAGTGTGA
AGTTAGtgaaactaatttttcatcCATTAAATATTATATGAGAATTAATA
TTTCATTCTATCTTTGTATGCCACAagctttttaaagtatatttatatta
atattatttgtttttaatattcctggtacaatttgagaatCTAGTCTAAC
ATTTTGTCATTCTTCTTATAATTTTTGTAATTAT
Run BLAST on NCBI

transcript from alignment at sc0000436:229243..229676

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022940 ID=TCONS_00022940|Name=TCONS_00022940|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0000436:229243..229676 (Clytia hemisphaerica)
ATAATTACAAAAATTATAAGAAGAATGACAAAATGTTAGACTAGattctc
aaattgtaccaggaatattaaaaacaaataatattaatataaatatactt
taaaaagctTGTGGCATACAAAGATAGAATGAAATATTAATTCTCATATA
ATATTTAATGgatgaaaaattagtttcaCTAACTTCACACTATAAAAATA
gactgaaaataaattgaagTAATTAGtaataataaatttttcgaTGACTG
ATTGATTAGGCAAAAACGAACAAGAGATCTTTATTGCAGCATTTCCATAG
CTACCAACTACATTTTAACGATACCCTCAAACCTTAAAATTAGTGTTAAG
TTTAAAAGGCTTCTAAAGGCAATTcatgtaatttttcaaaagaaattcca
CTATAATTTTTACTAAACAAACATAATTCTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012895XLOC_012895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022940-exon-sc0000436-1491911889:229243..229676TCONS_00022940-exon-sc0000436-1491911889:229243..229676Clytia hemisphaericaexon
TCONS_00022940-exon-sc0000436-1510915933:229243..229676TCONS_00022940-exon-sc0000436-1510915933:229243..229676Clytia hemisphaericaexon
TCONS_00022940-exon-sc0000436-1575043694:229243..229676TCONS_00022940-exon-sc0000436-1575043694:229243..229676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:229243..229676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.307523	0	0.174666	1.70111	1.34424	2.22993	3.22634	3.18895	3.78545	2.07675	1.68021	0.524336	1.74249	0.358141	0.38434	1.18369	1.45589	0.335232	0.876991	1.98189	1.78467	1.08475	2.13675	1.01576	0	1.94588	2.0767	1.22508	0.534926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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