TCONS_00022947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022947
Unique NameTCONS_00022947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022947 ID=TCONS_00022947|Name=TCONS_00022947|organism=Clytia hemisphaerica|type=transcript|length=424bp
ATTCAGTTTAGAATTAAGATGTCAATTAAagctgaaaaaattaaatgcaa
TGCAGAAGAAGACTTGTTTGATAAACTTAATGTGAAGATTGAAGAGATCC
AGCAAGACTATGTTTTGGTTAGTAAGCAGAAAATGGCTCAGCTAACTCTT
GAAATCAATCAGCTCAAAGATGGTCTTGCCAAgGTTGTAAACAAAGATGT
GATTCAATCAACATTCAAACAACACACAAAGCAGCTTGAATGCAGATCAA
TTGCAGCAGAGAAACAGAAACTCCAAAGAGAACTAGAGCTTTTCAATTCT
AGACATGAATCAACTTTAGTTGAGTTAGAAAAAGAGAGACAGaaagcAGC
ACAACTTCTAGTAAGTTAATAAAGACAgtgattattttattttattttat
atgagTGTGTATGACATGTTTTGA
Run BLAST on NCBI

transcript from alignment at sc0000437:157711..159993+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022947 ID=TCONS_00022947|Name=TCONS_00022947|organism=Clytia hemisphaerica|type=transcript|length=2283bp|location=Sequence derived from alignment at sc0000437:157711..159993+ (Clytia hemisphaerica)
ATTCAGTTTAGAATTAAGATGTCAATTAAagctgaaaaaattaaatgcaa
TGCAGAAGAAGACTTGTTTGATAAACTTAATGtaatttatgtaattttaa
tttttgttaaaaCAATTCTGATGATATGtagaaagttgatattttcaagt
ttcaatgaaaatttatcTTTCTTAGGTTTTTAAGTCTCACACTTtagtaa
tttttcataaaagacTAATTTTGAACTTGAATAGGTGATAAAATTCTAAT
TAtattaaaatgattttatcaaaGGTGAAGATTGAAGAGATCCAGCAAGA
CTATGTTTTGGTTAGTAAGCAGAAAATGGCTCAGCTAACTCTTGAAATCA
ATCAGCTCAAAGATGGTCTTGCCAAggttatatatttaaaaaaaactcaa
tttaattatttcttgttaaattcaaaattaaaatttgtcaATATAAAACC
TCTACCTTTTTGGTATTATATTTCATGTGTTACAAAATTTCGTggttaca
gtatgtggcccccaaaatgactatccaaattgaaatctttctagtgaatt
cagaaaatagagattaagttaaaaaattttcttgtgaATTAAGCTTCAAC
ATGTCTAGTTTCTTTCCCAAAAGATAACTTTCTTAGAATAAaggtttttg
tatgattttttttcagtcaaagttgaGTCCcatttttctaatggccccca
aaacggaggtttagTTTTTTCGAAATATCTTAATCAAAAAGCATAGCACC
GATATCAAATTACTATCAATAGGTATCAAGGCAATGCTTTACgacttaaa
aaagtcaaaatttacttttctcTTTATCTTCGTCTTCATACAAATGGTTG
TCAAAATGGATGTTAGTGACCCCCAAAACGTTgattcaattaaattgaaa
ttgttaaaaaccCATCACTTAATCATGTCTCGAATTAAAGACATGATAAA
ATAATTTgtttgttgataattttgcaaaaaaaattcatcccaAAACAATA
AATGTTTCAGGCCAGGCTGAGTGCAAAATTCTGTGCAAAATACTAGCAAT
GCCTCCGATgttaattttatcgtgctatatttagaattttctgaaaaact
ttgACCTACTGAGTTGGTATGTTGGTATATGTTTATACTTTCCAGAGTTA
CTCAGCTTTTAGGGGTTAATTTCCAATCTGACTTTTGACGGTTTTAGTcc
aaaaaaaggaattttcaaaactaatttttgaaaaacaaggaagaagaaaa
ttagccatttaaaaattttattatcaaaaatacaaaatacctATTTGTTA
TACTTAGTTATTATTTTTGTCACtagttttgttactatttttggtATCTT
TATACCCCAATACGTTGCGTTTCAAGcgaaatcagtcattttcttgcttt
attcccactttttgaaaatgccttATTTAGTGAATCGTGAAATTTAATAC
atgcaaaaatttccaaaaactgGCAATCGCAAAATTTAGTACACGCAAAA
AACATTTCCTCTAAAAAATGAGATATAACATACAcgcgaaatataatacc
aataaggtaattggaaaaaaatcttccaaatcTTCAGGAGAACTTGAATT
CAATATCTTTTCGCTTTGATATTAAtcttaatttttcctaattACAAAAT
TTCCATGTAGGTTGTAAACAAAGATGTGATTCAATCAACATTCAAACAAC
ACACAAAGCAGCTTGGTATGTTTTAAtttattgaagatttttttaaataa
aacactAGTAGTCTCAGACAGCGCCCAGACAGCTACATCATTAGAATGTG
ATGTCTTCTTTCCTAATGGTtaatactttttgaattttcctaCTTTGAAT
GGTAGCTATTTCTTATATACTAGCAATTGGCACTCTTTTAAACTAGTTcc
caattttattttgattatatCAGAATGCAGATCAATTGCAGCAGAGAAAC
AGAAACTCCAAAGAGAACTAGAGCTTTTCAATTCTAGACATGAATCAACT
TTAGTTGAGTTAGAAAAAGAGAGACAGGTTTGtaattttccttgtatttt
caagtaaatttgaattaaagCTCATTTAAATTACGCAGTGAATGAAAAAT
ACTACTCAGCTTTTTTATGGAAACTTATACTGAGCtgatttgaaagtttt
cttttattcttaGACTTGTGTTTTTAAACgaaaactttcttttgttttta
gaaagcAGCACAACTTCTAGTAAGTTAATAAAGACAgtgattattttatt
ttattttatatgagTGTGTATGACATGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012900XLOC_012900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022947-exon-sc0000437-1491911889:157711..157791TCONS_00022947-exon-sc0000437-1491911889:157711..157791Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1510915933:157711..157791TCONS_00022947-exon-sc0000437-1510915933:157711..157791Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1575043694:157711..157791TCONS_00022947-exon-sc0000437-1575043694:157711..157791Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1491911889:157985..158086TCONS_00022947-exon-sc0000437-1491911889:157985..158086Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1510915933:157985..158086TCONS_00022947-exon-sc0000437-1510915933:157985..158086Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1575043694:157985..158086TCONS_00022947-exon-sc0000437-1575043694:157985..158086Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1491911889:159371..159425TCONS_00022947-exon-sc0000437-1491911889:159371..159425Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1510915933:159371..159425TCONS_00022947-exon-sc0000437-1510915933:159371..159425Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1575043694:159371..159425TCONS_00022947-exon-sc0000437-1575043694:159371..159425Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1491911889:159634..159737TCONS_00022947-exon-sc0000437-1491911889:159634..159737Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1510915933:159634..159737TCONS_00022947-exon-sc0000437-1510915933:159634..159737Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1575043694:159634..159737TCONS_00022947-exon-sc0000437-1575043694:159634..159737Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1491911889:159912..159993TCONS_00022947-exon-sc0000437-1491911889:159912..159993Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1510915933:159912..159993TCONS_00022947-exon-sc0000437-1510915933:159912..159993Clytia hemisphaericaexon
TCONS_00022947-exon-sc0000437-1575043694:159912..159993TCONS_00022947-exon-sc0000437-1575043694:159912..159993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:157711..159993 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.71251	2.9533	2.39563	3.51598	0.828645	1.22485	3.54432	1.39313	2.91251	0.382102	0	1.92822	1.0027	2.18366	0.0319849	1.84088	1.71253	2.31571	0.920035	1.12106	0.436176	2.71101	1.52537	0.638702	22.7415	18.1317	0	0	0.60186	0.872041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top