TCONS_00022949 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022949
Unique Name	TCONS_00022949
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2900

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000437:252246..266381+
coding sequence from alignment at sc0000437:252246..266381+

transcript sequence

>TCONS_00022949 ID=TCONS_00022949|Name=TCONS_00022949|organism=Clytia hemisphaerica|type=transcript|length=2900bp
cttcaaaaacaaaaataaaacaatgcaatgtcttcttttttcaaaaaaag
atatatttttcgtcattttgataaaaatatactaaatattttacaaatat
ttttatataataatattttaacaccatcaaagaattctccctccaaattt
gaggtctctagctacactagaaaaagagatatgcaaaatttaagaagcat
gacatgaatttcttttttttcttttttgacacatttttcgaatttttcca
agctatttttattttcctaaccttttttttgacatttttagtcaaatttt
tgacactaaaatttgaatatctttacaaccactaatcctctggaggccta
tgacccctcgttttctttctttttcaaagctctacaagataggatagatt
ttgaaaaaaaaaattaaaacttgaaaaatcttctgaaGTTGCTACCCTAA
CTCACCCGAGTATCTGCCTATCTTCATAAAACGAAAAACAAAAGACAGGG
AATGAATAGATTATTATGCTCACCAGGCTACTACCAGTAGTTTCATGTAA
TGTCTATTTGTCAGGTCAAATTGGTCAAACTAAAAGGAAAGCAGACACAC
ACACCGACACACAGCaggtttgttttctttttgtagtAAGAGCCGACTGC
ACCAGGCTTACCTCTTTGCGGACTACaacactttcactttcaaaacattt
tgcgGGCTTTTTTGTCTCGATGTTTTATAGTGGGAAGGAAGAAACAAGCA
AGAAAATTTGTGAATAAGCGAGAAAAGAATTCACTAGCCTTTTGATTTAG
CCTCACTTTGATGGGGAAGCATGGATCCTTCTCGAAAATTCTTCGCTATT
CGAGGTGTTGTGTTTTTAGTTTGCAAGAGCTCTGGCGTTTGACAGAAGGA
TTTTTTGTTTTACGTTGAAAACTGACAAAGATTCTCGCCGTAATGTCGTC
CCTAAATCCAATCAATGTATTGCATGCAGGTGCTGAAGAAGAGAGAGCAG
AAACTGCTCGCCTCTCTTCCTTTGTTGGGGCTATTGCCATTGGAGACCTT
GTCAAAACAACCCTTGGTCCAAAAGGGATGGATAAAATTCTTTATTCAAT
GGGTCAAGAAGGAAAAGGTGGACAAAGCATCCAAGTTACTAACGATGGTG
CAACAATCTTGAGATCAGTTGGTGTTGATAATCCAGCAGCTAAAGTTTTG
GTTGATATTTCAAAAGTCCAAGACCAAGAGGTTGGTGATGGCACAACCAG
CGTTGCTGTCTTGGCTTGTGAATTACTGAGAGAGGCTGAGAAGCTTATCT
CACAAAAAATTCATCCACAAACCATCATTGCAGGATGGAGAAAAGCTTCC
AAAACTGCTGCTGCTGCATTAGAAAACTTTGCTAAAGACAACAGTGCTGA
ttccgaaaaatttagaaatgactTGATGAACATTGCTCGTACCACTTTGA
GCTCTAAAATTTTAACCCAACACAGAGAACATTTTACTGAACTTGCTGTA
AATGCTGTCATGAGATTGAAAGGCAGTGGTAATTTGGAAGCTATTCAAAT
CATCAAGAAATTAGGCGGCAGCTTAGATGATTCTTTCCTCGATGAAGGAT
TCCTCTTAGATAAAAAGATTGGAAACAATCAACCAAAAAGAATTGAGAAT
GCCACAATTCTCATTGGCAACACTGCTATGGATGCTGACAAAATCAAGGT
CTTTGGTTCACGAGTACGTGTCGATTCAGTTGCCAAAGTAGCTGAACTCG
AACTGGCTGAGAAAGAAAAGATGAAAGATAAAGTCAACCTTATCTTGAAC
CACGGAGTCAACTGTTTTATTAACCGTCAACTGATTTACAATTACCCTGA
ACAACTCTTTGCTGATGCAGGTGTGATGGCTATTGAACATGCTGATTTTG
AAGGTGTCGAACGACTTGCTTTGGTTACTGGTGGTGAAATTGTCTCCACC
TTCCACAACCCAGAAATGGTCAAAATTGGAAAGTGCAAACTCATTNTGTG
ATGGCTATTGAACATGCTGATTTTGAAGGTGTCGAACGACTTGCTTTGGT
TACTGGTGGTGAAATTGTCTCCACCTTCCACAACCCAGAAATGGTCAAAG
TTGGAAAGTGCAAACTCATTGAAGAAGTTATTATTGGTGAAGATCGTTTG
ATTCACTTCTCAGGAGTCGAAATGGGAGAAGCATGTAGTGTTGTTTTACG
TGGTGCTACTAAGCAAATCTTGGACGAAGCTGATCGATCTCTTCACGATG
CTTTGTGTGTTCTTCAACAAACCGTCAAAGAAACCAGAATCGTCTTCGGT
GGAGGCTGCTCTGAAATGGTCATGGCAAATGCTGTCAGTAAATTAGCTCA
AGAAACCCCTGGCAAAGAATCAATGGCTATTGATGCTTTCGCAAATGCTC
TCCGACAACTACCAACCATCATTGCTGACAATGCTGGTTACGATAGCTCT
GAGTTGATCTCACAATTGAGAGCTGCTCATACTACCGGTAACTCAACAGC
TGGTTTGGATATGAATCAAGGAGAAATCGGGGACATGGTTGAACTGGGAA
TCACAGAATCCTTCAAAGTGAAATATCGTGTTCTCACAGCTGCTGCTGAA
GCAGCTGAAATGATCTTACGtgttgatgacatcatcaaGGCTCCACCACG
ACCAAGAGGCTCAGACAGATGCGGTTAATTTCATTTAATGAACATAATAA
GAATGCTTTCATGTTTGGAGTACATCCAGAAGGCTTCCAGTCCTGTGTGA
GGACATATATCATCATTCCTGGGAAAGCCTTTTTTACCTCAAATTATAAT
TTATTCAGTTCAATCGACTCtttatgcaaaatttaaaaaattcatggaca
gtctaaaaatatatacatcAAACGAAAACAATTTTCTCCTCAGCTCAAGG

Run BLAST on NCBI

protein sequence of TCONS_00022949-protein

>TCONS_00022949-protein ID=TCONS_00022949-protein|Name=TCONS_00022949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MSSLNPINVLHAGAEEERAETARLSSFVGAIAIGDLVKTTLGPKGMDKIL
YSMGQEGKGGQSIQVTNDGATILRSVGVDNPAAKVLVDISKVQDQEVGDG
TTSVAVLACELLREAEKLISQKIHPQTIIAGWRKASKTAAAALENFAKDN
SADSEKFRNDLMNIARTTLSSKILTQHREHFTELAVNAVMRLKGSGNLEA
IQIIKKLGGSLDDSFLDEGFLLDKKIGNNQPKRIENATILIGNTAMDADK
IKVFGSRVRVDSVAKVAELELAEKEKMKDKVNLILNHGVNCFINRQLIYN
YPEQLFADAGVMAIEHADFEGVERLALVTGGEIVSTFHNPEMVKIGKCKL
IX

Run BLAST on NCBI

transcript from alignment at sc0000437:252246..266381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022949 ID=TCONS_00022949|Name=TCONS_00022949|organism=Clytia hemisphaerica|type=transcript|length=14136bp|location=Sequence derived from alignment at sc0000437:252246..266381+ (Clytia hemisphaerica)
cttcaaaaacaaaaataaaacaatgcaatgtcttcttttttcaaaaaaag
atatatttttcgtcattttgataaaaatatactaaatattttacaaatat
ttttatataataatattttaacaccatcaaagaattctccctccaaattt
gaggtctctagctacactagaaaaagagatatgcaaaatttaagaagcat
gacatgaatttcttttttttcttttttgacacatttttcgaatttttcca
agctatttttattttcctaaccttttttttgacatttttagtcaaatttt
tgacactaaaatttgaatatctttacaaccactaatcctctggaggccta
tgacccctcgttttctttctttttcaaagctctacaagataggatagatt
ttgaaaaaaaaaattaaaacttgaaaaatcttctgaaGTTGCTACCCTAA
CTCACCCGAGTATCTGCCTATCTTCATAAAACGAAAAACAAAAGACAGGG
AATGAATAGATTATTATGCTCACCAGGCTACTACCAGTAGTTTCATGTAA
TGTCTATTTGTCAGGTCAAATTGGTCAAACTAAAAGGAAAGCAGACACAC
ACACCGACACACAGCaggtttgttttctttttgtagtAAGAGCCGACTGC
ACCAGGCTTACCTCTTTGCGGACTACaacactttcactttcaaaacattt
tgcgGGCTTTTTTGTCTCGATGTTTTATAGTGGGAAGGAAGAAACAAGCA
AGAAAATTTGTGAATAAGCGAGAAAAGAATTCACTAGCCTTTTGATTTAG
CCTCACTTTGATGGGGAAGCATGGATCCTTCTCGAAAATTCTTCGCTATT
CGAGGTGTTGTGTTTTTAGTTTGCAAGAGCTCTGGCGTTTGACAGAAGGA
TTTTTTGTTTTACGTTGAAAACTGACAAAGATTCTCGCCGTAATGTCGTC
CCTAAATCCAATCAATGTATTGCATGCAGGtatatttcatatattttttt
cagaatcaTGATAGGAAGAGACATATCTGGATACTatagggccattccag
aaaaaaaaaattaccccctaattaatggatgacatcaatttttgaaataa
attttggcacggaattccaggcaaactttaaagagaaagtatcggaattc
catgaattttacttaattttgcattaaagtactggaattccatgattttt
ttaggttacagtaacggaattccacTGTTTTGATatgataggtattttgt
aaattttttacggaaattccggactttcttgaaagcaatttgctacggaa
attccatgtcgtccattggggggtaacgaatgaaaactggaatggcccat
aTAGACAAGTAGCTGATCTGGGCACACCCTAAAAAAAGGCAATCTGTCAT
ACACCCGCTTCTCACACACCCACTGGGGCCCTttcaggaccctgccgacg
caccggacttaacgaacaccggacacgcgaaaatcCGGTGTAAAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtcgacataaactcccttaagggcaagag
acctggtatatgacgagccgtttttccattgttttcaagaagctgttttt
ccatctctttacattcctctgaccggacttaaggaagtcggatgtccggt
gtcggagaaggaaattttttttcccccaGACAATCAAAataccggacatg
accagtccggtgcgtccggtgtttcttaattttttgtttcataaatgtcc
ggcgtccaaaattccctgtatgcatagcgaaaggatactttttgccaccg
gacaaatacaccggacagtccggtgcgtcggcagggtcctgccctttccc
attggaaaaattaGACAAAATATCATCCCCAGTAGAAAACTAACTTGTAT
ACAGTACatgtccagacgatctcaatcgaacggaatcgacgattgaacca
gtcgaacgcaatcgaatctcaatcgaatattaccgcaattttcagattca
attgatattcgattgcgttcaattgatatttgattgcgttcgatttcgTC
GATCGTcagttcatcgcataatttctacaggatatcgaaagtaatttcat
tcggcttgtgatatttgagagcttggatgttgggaagctccaagaataaa
gccagacgatctcaatcgaacagaatcgaCGATCCAACCAgtcgatcgaa
ccagtcaaacaacaatcgaaccaatacacctttcctgtaattcaaatttc
tcagaaatggcccgggaaaaagTGCGCTCCATCggtgtgtataaaattgt
ttgggaggtaaaaaacacgtttttgcctgcaaggggttagggaaagtggg
atttgagcctctaacttttgacagcgaccttcttttggcaaaatattttc
agggtggtataatatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNacttaagaaaagctcaaaaaaccaactttccc
taagggaacgcaggcaaaaacgggtttgtttacctccagagaccaaacgg
tggagagcatcaaaataatagACCAATTCACTGTGATGTCATTATGTTTT
GGTTTGTCTTGTTTAGTCTAGCGAAATTGCATTAAAATACAGGATGATGG
AGACAAATGCCCCAAACTTTGTCTCTTTTACCTTTGTTCTCAAGCtgaaa
atctaaaacaaaagtgagaCTTAGCGAGATCACAAAAACAAACCAAACCA
AGTGAGAAGTGGTCTATGCGCacgcattagttttacgaattatgTGACAG
GTgtatcgaatattacccagaattttgacgttcgattgagattcgattgc
gttcgacaatcgaatttcaatcagtcgtttgcgttcgatttggtttgatt
ggttcgatcgtcgattccgttcaattgagattgtctggacatgtgcgttt
ggtttgggaacgtgAAACACGAATGCGAACTATCcatatctaaacttttc
aatatatctccagaactaacagattttttaaaattctgtaaaaaggttca
agttcctgaatagttttacaatgttctgtgaaaaaatcataaccatcagt
caaatactcatTCATCtatttttaagattgaagacaaaaatttgcgaaga
aaaataaggggtcactcacaaatcgattttaggttagaagaacgtcaatt
gatGTATATGGTAGGGtggtcaggccaaaattttcccctcaaattttgaa
aaccaaactaattttatttgaaagtccttacctttgtgagaaaaatgagg
ggtcatttgttaaaattggtcaagtagttcaaaagttattctattttcaa
accacaaaataaaccagctacgctggaagctccggctttagagattaaaa
gatgtgaaagatgagcttgttgagttagttgtgttcgaacgttgcccaca
aactactaatcagaacagacAATANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtcgcgaggatttaatttcgcgattgggcctacccgcgaaatttaaaa
attttgcggggacttaatttcgcgggtggcattattgggtggcaatattt
tcacgatctTGTGACTTAACTGTCAAATCGTGTATTTTGgatgttgaaat
acacattattagcacttctttgatgccagtaaacattcaaaaagtatttg
tttgacaaattttaagttttgtttagaaatattttgcggatgaggccttt
ccaaatttccattgagacttaatttcgcggatgacacccacgATGACATC
CGCGAAAtcagcgaaatttaatccccgtgaaagtttatcccattaagcca
cgggtttttagctaagcattattttttctgctgggataatacttggagaa
GAGTAGGATggaccaaataaaatggtacaatagtgtgtatgtaataaata
gtgttatatttggaaaaaacctgtttcgggtttgaaaaatgttcaaaagg
aacggtcgccccagccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNatcatcatgaaaaatgaccaaaagtccaaaata
gatCATTTTTACAGCATAAAATCATGAGAAACACACGTATTTGAATTCAG
TATACAGTCAGACAGTACAATGTACAAGGCaccatcaaacttctcataaa
tcatgtccaaaacatcatgaataaggatgaaaaagatgaatttttcactg
agatttgccagtatttgctacacagtcGGCTAGTCGatagccatcttttt
ctaaatacttttcggccaatcaaatcacagtattatcggattatcggaat
cagtgatccgtttttgttaaatcggaatagatcatcggattagataaaca
gacaaaaaatgtcttaaCCATTGTCGGAAGgtagaattaaaggctcctag
gcccgatcttgttcaaatttacacaggaattgtgtgttagtatcctttac
tgaattctcatagtgatatgtttgtaaaaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGcgacgaaattacgacaaagtccaagacgatcattttc
agccataatactgtgaaaatttctttgatcttgttcaaatttacacagga
attgtgttttagtatcttttactgaattctcatagtgatatgtttgtaaa
aaatctgtgtcgggtttgaaaaatctaaaggaatggtcgccagccgcgac
gaaattacgacaaagtccaagacgatcattttcagccataatactgtgaa
agtttctccgatcttgttaaaatttacacaggaactgtgtttcagtatcc
tttattggattctcatagtgatatgtttgtaaaaaatctgtgtcgggttt
gaaaaaaaaaaggaatggTCATCGCCAGCCGATGAAGAATACGAcaataa
caaagtccaaaacaggatcattttcagccatacataacaccacaaaaaat
actgtgtatcaatggctgtgtgtttgaaagtttcattgtcaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCGTTtttgttaaatcggaatagatcatcggattagataaaca
gacaaaaaatgtcttaaccattgtcggaagagagaattaaaggctcctag
gccggagcaaaaacCACCTTTTCAAGGAATCGTCTCCCTACCACGCGCAA
CCAAGAAATGACCTTTGGACAGCACCGAAAAACATTAAAGGTGGCGGGTG
AATTATAGCCTTCCGCGTGGCAggcgtgaggagttttgctggcgtggtct
gaaaatcggcccgatgactgttaaactttagcctatcgctaatgagctgg
aaatgatagctaaaaacaaattttaccaatgaaaagctgaaacccttTAT
AACGATATATGGTAGTCCTGATAACAATTTCAGGAAAAtgccgaaaaatc
gaaatttcttctttttctcgatttaaagatggcccgtagattatcgaaaa
ggctaccacgtgacaaactaaagtactatctttcccgcgttttataaaaa
aaccgcgagtctataactaatccagctcaatagcgatagccatttgaaaa
aatatagtCAAGGTCGACGGTGGTGCCACGAATTCCgtggtatatctttt
tattgaaggtaggtaacgggatggggtttttttctttgttttctctgata
aattctgagtatttaaaaaaaaaaataagaatgaataagtttggagttgt
taaggataagttatgatggatggaatgttctaattttgattttcgacttg
ttccacgcaaaaaatcccaacgagtgcgcaccctatatatgggtgggtgg
gttaaaggttgttgaccaaaacaaacggcccaatgtttatgtcttttctt
tgtttgacggcccgaacggcccttgaatttttgcagatggTCGTTCTTTC
TGTCACTACATACTATGGAGATAATTAATTACGggaattttgtgaacaag
tttagaaattgTCTCCGTTTCTCAGCTTTTAATAAAACGTCAATTGGCAT
TCTTCTGAATGACCcctaaaccttgagcacaaaaaatgcttttttaaaca
cctttttccaccaaaaaacaaataacttttatggacttaccttccccaaa
cattgaagaagcctctactaattgaacttaaagtaaatgagataagataa
gatctATTTATAAAAGGTCTATTTATAGagaggttgaaactgtttttctt
cgCTCAGTGGCCAGAGAGGAATAAGCCTTTTTCACACAgcgattcaagct
ttcatattattccttctctaaagaagggtgttggaattagacaagggatg
tcgatattagaccaacttacggtagtttGTATTTCTGCTATATAAATAAC
TGTTAGAAACAATCTTCAAGCATGAATCAGTGGCACAGTGGTTACAGCGT
TGGATTTGTGATCAtcagaactttgcatttagtgggttcgaatcccaccg
ctGGCGATCTTTcggaaaatcattcaaaaaaatatagaaaatgacTCACA
GAAAGATACAATGTACAATGCTGCTACTCAAACACTCagaacaaattttc
aaatttgaaatttacaaCCGACATGCTAAAGCTCTGAAAgtcggaaaatt
ttcaacatctggaaggtttagacacacaaaacacagaaaacacaacattt
gcAAGTCCTATCATAAAAAGTCATTTTCTACAGCTATTGGATCAAACACA
GAACACAACTTTTAAAAGTCCTATCAAGTTCTTTGAGAATAAATTAAACT
AGCCTGGATGATTCTTTGGACTGAAGGACATATTCCATTGACCAATCAGA
TTCATTCTTTACTTTGTTCACCACTACAGAATTTTGGACGTTTTATTTGT
GACAAACTTTgaccaaaaaaatcaattttagagAAGTTCATTCCATGCCA
AAACTTTCCATGTTTCTTTTTGATTACATTATTCTTGTCAccattttgaa
aaccaaaacaaacagttGGTTGTTGGGTTCCCTTTGTTAGACAGTCTACA
TGAtgtctactttaggcgtacaaactttcgcaaggtcgaaaaatcgcgaa
gtACGCATAGTNtttcaaatttttcattttcccccaaactttaaaaaaag
ggccaaaatcagaacccccccccccctttataaaggggggggaggacact
atgttacgatatttactttcgcaaatttgagggaaaagtgtttttcgtga
gcataaacttttgcaaatCTCTGGATTAAAATGTgaattttcgaatgaaa
attgcctcaaaagtgaaaaatattccttgAATCTGATACAGACGGTTGCT
GTTGCTATTCaactttaaaaaggcattaaaggataaaaatatgttgaaaa
ttcgatatttattaCGGCTTTGAGGTTTTattgatttccaattttttgat
aatttttcccATGCTCATTAAAGTTTCACGAATtaagttaagaattttca
aagacatttactttcacgaaaaaggccaaaattcacGTTCTGTACATTTC
AATACACATCaagtaaataattttttatgatgGGCAGTATGGTATTTTGG
GGTATCCAGGTTGTATTGATCAGATTTGATCAGTCTTCGAAAGTTTgaaa
actttcaacaaaattttcacCTAATAGAATGAAACGAGATGATATTTATA
TTGTAGAATTAGCTTCGAAAGACTTGAGATTTGttctattttttactttt
tagaatAGTGTCAGTTCATTGACCAGAACCAATAAAAGCTCATACATTGT
TCTCTACTTCCAGGTGCTGAAGAAGAGAGAGCAGAAACTGCTCGCCTCTC
TTCCTTTGTTGGGGCTATTGCCATTGGAGACCTTGTCAAAACAACCCTTG
GTCCAAAAGGGATGGATAAAATTCTTTATTCAATGGGTCAAGAAGGAAAA
GGTGGACAAAGCATCCAAGTTACTAACGATGGTGCAACAATCTTGAGATC
AGTTGGTGTTGATAATCCAGCAGCTAAAGTTTTGGTTGATATTTCAAAAG
TCCAAGACCAAGAGGTTTGTACAGTGTCATTTTGGATAAAAAAGTGCTTA
TCATCAAATTTCTCTCACTCTATCTATCATTTTGTGAAAGGCATATTTTA
ATTAGTTTGAGTTTATAGTGAAATCATTTTAGCGATTCTTTCAGATTCTT
TCTGTTTTCTTTcaattattgaaatattttgaattggCATTTTGTCTGCT
TTTCTTTcaagttgtttttatttattcGACAGTGCTGTAAAAATAGTTAC
AAATATTAATTAATTCAAAAATGTAACACTCAGATATACTTTTCTTACTT
TTaaacaaagtttagaaacaGTCCCAGCAAAtatcaagattttttttaat
ccaCCAAGGAGTTATATTTTTAGTCTTTGAGATTAATTAATCCTAAGCTT
GGTCTGCTCAGAAGTCAAAGGTAACATGCCTTAGGGCCCTCCATATAGTA
CATaagcaaagattttccaaatatttgacacccctTCCCCCCTTGTacac
agagaacaatagaaatgatgtcatttaaacaatagatatgcttttgctaa
accccttCTCCCCTTCACTTCGTACGTACTATATAGATGGCCCCCTTCTT
CTCTAGTATTGAGTAAGTTCAACTTTGGCGCCTTTTTAAAGTGAGGAACC
TTCCCCTTAGAAGTATTGAATTTAGCACCAATAGCTTCAAacgatgtttt
ttttcttgcatTCTAGGTTGGTGATGGCACAACCAGCGTTGCTGTCTTGG
CTTGTGAATTACTGAGAGAGGCTGAGAAGCTTATCTCACAAAAAATTCAT
CCACAAACCATCATTGCAGGATGGAGAAAAGCTTCCAAAACTGCTGCTGC
TGCATTAGAAAACTTTGCTAAAGACAACAGTGCTGAttccgaaaaattta
gaaatgactTGATGAACATTGCTCGTACCACTTTGAGCTCTAAAATTTTA
ACCCAACACAGAGAACATTTTACTGAACTTGCTGTAAATGCTGTCATGAG
ATTGAAAGGCAGTGGTAATTTGGAAGCTATTCAAATCATCAAGAAATTAG
GCGGCAGCTTAGATGATTCTTTCCTCGATGAAGGATTCCTCTTAGATAAA
AAGATTGGAAACAATCAACCAAAAAGAATTGAGAATGCCACAATTCTCAT
TGGCAACACTGCTATGGATGCTGACAAAATCAAGGTCTTTGGTTCACGAG
TACGTGTCGATTCAGTTGCCAAAGTAGCTGAACTCGAACTGGCTGAGAAA
GAAAAGATGAAAGATAAAGTCAACCTTATCTTGAACCACGGAGTCAACTG
TTTTATTAACCGTCAACTGATTTACAATTACCCTGAACAACTCTTTGCTG
ATGCAGGTGTGATGGCTATTGAACATGCTGATTTTGAAGGTGTCGAACGA
CTTGCTTTGGTTACTGGTGGTGAAATTGTCTCCACCTTCCACAACCCAGA
AATGGTCAAAATTGGAAAGTGCAAACTCATTNTGTGATGGCTATTGAACA
TGCTGATTTTGAAGGTGTCGAACGACTTGCTTTGGTTACTGGTGGTGAAA
TTGTCTCCACCTTCCACAACCCAGAAATGGTCAAAGTTGGAAAGTGCAAA
CTCATTGAAGAAGTTATTATTGGTGAAGATCGTTTGATTCACTTCTCAGG
AGTCGAAATGGGAGAAGCATGTAGTGTTGTTTTACGTGGTGCTACTAAGC
AAATCTTGGACGAAGCTGATCGATCTCTTCACGATGCTTTGTGTGTTCTT
CAACAAACCGTCAAAGAAACCAGAATCGTCTTCGGTGGAGGCTGCTCTGA
AATGGTCATGGCAAATGCTGTCAGTAAATTAGCTCAAGAAACCCCTGGCA
AAGAATCAATGGCTATTGATGCTTTCGCAAATGCTCTCCGACAACTACCA
ACCATCATTGCTGACAATGCTGGTTACGATAGCTCTGAGTTGATCTCACA
ATTGAGAGCTGCTCATACTACCGGTAACTCAACAGCTGGTTTGGATATGA
ATCAAGGAGAAATCGGGGACATGGTTGAACTGGGAATCACAGAATCCTTC
AAAGTGAAATATCGTGTTCTCACAGCTGCTGCTGAAGCAGCTGAAATGAT
CTTACGtgttgatgacatcatcaaGGCTCCACCACGACCAAGAGGCTCAG
ACAGATGCGGTTAATTTCATTTAATGAACATAATAAGAATGCTTTCATGT
TTGGAGTACATCCAGAAGGCTTCCAGTCCTGTGTGAGGACATATATCATC
ATTCCTGGGAAAGCCTTTTTTACCTCAAATTATAATTTATTCAGTTCAAT
CGACTCtttatgcaaaatttaaaaaattcatggacagtctaaaaatatat
acatcAAACGAAAACAATTTTCTCCTCAGCTCAAGG

Coding sequence (CDS) from alignment at sc0000437:252246..266381+

>TCONS_00022949 ID=TCONS_00022949|Name=TCONS_00022949|organism=Clytia hemisphaerica|type=CDS|length=3177bp|location=Sequence derived from alignment at sc0000437:252246..266381+ (Clytia hemisphaerica)
ATGTCGTCCCTAAATCCAATCAATGTATTGCATGCAGGTGCTGAAGAAGA
GAGAGCAGAAACTGCTCGCCTCTCTTCCTTTGTTGGGGCTATTGCCATTG
GAGACCTTGTCAAAACAACCCTTGGTCCAAAAGGGATGGATAAAATTCTT
TATTCAATGGGTCAAGAAGGAAAAGGTGGACAAAGCATCCAAGTTACTAA
CGATGGTGCAACAATCTTGAGATCAGTTGGTGTTGATAATCCAGCAGCTA
AAGTTTTGGTTGATATTTCAAAAGTCCAAGACCAAGAGGTTGGTGATGGC
ACAACCAGCGTTGCTGTCTTGGCTTGTGAATTACTGAGAGAGGCTGAGAA
GCTTATCTCACAAAAAATTCATCCACAAACCATCATTGCAGGATGGAGAA
AAGCTTCCAAAACTGCTGCTGCTGCATTAGAAAACTTTGCTAAAGACAAC
AGTGCTGAttccgaaaaatttagaaatgactTGATGAACATTGCTCGTAC
CACTTTGAGCTCTAAAATTTTAACCCAACACAGAGAACATTTTACTGAAC
TTGCTGTAAATGCTGTCATGAGATTGAAAGGCAGTGGTAATTTGGAAGCT
ATTCAAATCATCAAGAAATTAGGCGGCAGCTTAGATGATTCTTTCCTCGA
TGAAGGATTCCTCTTAGATAAAAAGATTGGAAACAATCAACCAAAAAGAA
TTGAGAATGCCACAATTCTCATTGGCAACACTGCTATGGATGCTGACAAA
ATCAAGGTCTTTGGTTCACGAGTACGTGTCGATTCAGTTGCCAAAGTAGC
TGAACTCGAACTGGCTGAGAAAGAAAAGATGAAAGATAAAGTCAACCTTA
TCTTGAACCACGGAGTCAACTGTTTTATTAACCGTCAACTGATTTACAAT
TACCCTGAACAACTCTTTGCTGATGCAGGTGTGATGGCTATTGAACATGC
TGATTTTGAAGGTGTCGAACGACTTGCTTTGGTTACTGGTGGTGAAATTG
TCTCCACCTTCCACAACCCAGAAATGGTCAAAATTGGAAAGTGCAAACTC
ATTNTGTGAATGTCGTCCCTAAATCCAATCAATGTATTGCATGCAGGTGC
TGAAGAAGAGAGAGCAGAAACTGCTCGCCTCTCTTCCTTTGTTGGGGCTA
TTGCCATTGGAGACCTTGTCAAAACAACCCTTGGTCCAAAAGGGATGGAT
AAAATTCTTTATTCAATGGGTCAAGAAGGAAAAGGTGGACAAAGCATCCA
AGTTACTAACGATGGTGCAACAATCTTGAGATCAGTTGGTGTTGATAATC
CAGCAGCTAAAGTTTTGGTTGATATTTCAAAAGTCCAAGACCAAGAGGTT
GGTGATGGCACAACCAGCGTTGCTGTCTTGGCTTGTGAATTACTGAGAGA
GGCTGAGAAGCTTATCTCACAAAAAATTCATCCACAAACCATCATTGCAG
GATGGAGAAAAGCTTCCAAAACTGCTGCTGCTGCATTAGAAAACTTTGCT
AAAGACAACAGTGCTGAttccgaaaaatttagaaatgactTGATGAACAT
TGCTCGTACCACTTTGAGCTCTAAAATTTTAACCCAACACAGAGAACATT
TTACTGAACTTGCTGTAAATGCTGTCATGAGATTGAAAGGCAGTGGTAAT
TTGGAAGCTATTCAAATCATCAAGAAATTAGGCGGCAGCTTAGATGATTC
TTTCCTCGATGAAGGATTCCTCTTAGATAAAAAGATTGGAAACAATCAAC
CAAAAAGAATTGAGAATGCCACAATTCTCATTGGCAACACTGCTATGGAT
GCTGACAAAATCAAGGTCTTTGGTTCACGAGTACGTGTCGATTCAGTTGC
CAAAGTAGCTGAACTCGAACTGGCTGAGAAAGAAAAGATGAAAGATAAAG
TCAACCTTATCTTGAACCACGGAGTCAACTGTTTTATTAACCGTCAACTG
ATTTACAATTACCCTGAACAACTCTTTGCTGATGCAGGTGTGATGGCTAT
TGAACATGCTGATTTTGAAGGTGTCGAACGACTTGCTTTGGTTACTGGTG
GTGAAATTGTCTCCACCTTCCACAACCCAGAAATGGTCAAAATTGGAAAG
TGCAAACTCATTNTGTGAATGTCGTCCCTAAATCCAATCAATGTATTGCA
TGCAGGTGCTGAAGAAGAGAGAGCAGAAACTGCTCGCCTCTCTTCCTTTG
TTGGGGCTATTGCCATTGGAGACCTTGTCAAAACAACCCTTGGTCCAAAA
GGGATGGATAAAATTCTTTATTCAATGGGTCAAGAAGGAAAAGGTGGACA
AAGCATCCAAGTTACTAACGATGGTGCAACAATCTTGAGATCAGTTGGTG
TTGATAATCCAGCAGCTAAAGTTTTGGTTGATATTTCAAAAGTCCAAGAC
CAAGAGGTTGGTGATGGCACAACCAGCGTTGCTGTCTTGGCTTGTGAATT
ACTGAGAGAGGCTGAGAAGCTTATCTCACAAAAAATTCATCCACAAACCA
TCATTGCAGGATGGAGAAAAGCTTCCAAAACTGCTGCTGCTGCATTAGAA
AACTTTGCTAAAGACAACAGTGCTGAttccgaaaaatttagaaatgactT
GATGAACATTGCTCGTACCACTTTGAGCTCTAAAATTTTAACCCAACACA
GAGAACATTTTACTGAACTTGCTGTAAATGCTGTCATGAGATTGAAAGGC
AGTGGTAATTTGGAAGCTATTCAAATCATCAAGAAATTAGGCGGCAGCTT
AGATGATTCTTTCCTCGATGAAGGATTCCTCTTAGATAAAAAGATTGGAA
ACAATCAACCAAAAAGAATTGAGAATGCCACAATTCTCATTGGCAACACT
GCTATGGATGCTGACAAAATCAAGGTCTTTGGTTCACGAGTACGTGTCGA
TTCAGTTGCCAAAGTAGCTGAACTCGAACTGGCTGAGAAAGAAAAGATGA
AAGATAAAGTCAACCTTATCTTGAACCACGGAGTCAACTGTTTTATTAAC
CGTCAACTGATTTACAATTACCCTGAACAACTCTTTGCTGATGCAGGTGT
GATGGCTATTGAACATGCTGATTTTGAAGGTGTCGAACGACTTGCTTTGG
TTACTGGTGGTGAAATTGTCTCCACCTTCCACAACCCAGAAATGGTCAAA
ATTGGAAAGTGCAAACTCATTNTGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012902	XLOC_012902	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00022949-protein	TCONS_00022949-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00022949-exon-sc0000437-1491911889:252246..253224	TCONS_00022949-exon-sc0000437-1491911889:252246..253224	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1510915933:252246..253224	TCONS_00022949-exon-sc0000437-1510915933:252246..253224	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1575043694:252246..253224	TCONS_00022949-exon-sc0000437-1575043694:252246..253224	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1491911889:263759..264009	TCONS_00022949-exon-sc0000437-1491911889:263759..264009	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1510915933:263759..264009	TCONS_00022949-exon-sc0000437-1510915933:263759..264009	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1575043694:263759..264009	TCONS_00022949-exon-sc0000437-1575043694:263759..264009	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1491911889:264712..266381	TCONS_00022949-exon-sc0000437-1491911889:264712..266381	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1510915933:264712..266381	TCONS_00022949-exon-sc0000437-1510915933:264712..266381	Clytia hemisphaerica	exon
TCONS_00022949-exon-sc0000437-1575043694:264712..266381	TCONS_00022949-exon-sc0000437-1575043694:264712..266381	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000437	supercontig	sc0000437:252246..266381 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
393.959	402.506	231.692	196.526	100.853	81.6147	122.358	134.46	168.318	156.086	224.784	197.803	306.167	312.677	255.94	249.914	233.391	219.729	122.97	160.095	211.694	217.554	258.869	259.085	223.227	248.512	172.954	206.594	176.686	175.205

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR017998	Chaperone_TCP-1
IPR027413	GROEL-like_equatorial
IPR012716	Chap_CCT_beta
IPR002423	Cpn60/TCP-1
IPR002194	Chaperonin_TCP-1_CS
IPR027409	GroEL-like_apical_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding

Blast

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BLAST of TCONS_00022949 vs. Swiss-Prot (Human)
Match: TCPB (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 485.337 bits (1248), Expect = 5.383e-160
Identity = 267/347 (76.95%), Postives = 301/347 (86.74%), Query Frame = 1

Query:  949 SLNPINVLHXXXXXXXXXXXXLSSFVGAIAIGDLVKTTLGPKGMDKILYSMGQEGKGGQSIQVTNDGATILRSVGVDNPAAKVLVDISKVQDQEVGDGTTSVAVLACELLREAEKLISQKIHPQTIIAGWRKASKTAAAALENFAKDNSADSEKFRNDLMNIARTTLSSKILTQHREHFTELAVNAVMRLKGSGNLEAIQIIKKLGGSLDDSFLDEGFLLDKKIGNNQPKRIENATILIGNTAMDADKIKVFGSRVRVDSXXXXXXXXXXXXXXMKDKVNLILNHGVNCFINRQLIYNYPEQLFADAGVMAIEHADFEGVERLALVTGGEIVSTFHNPEMVKIGKCK 1989
            SL P+N+  AGA+EERAETARL+SF+GAIAIGDLVK+TLGPKGMDKIL S G++     S+ VTNDGATIL+++GVDNPAAKVLVD+S+VQD EVGDGTTSV VLA ELLREAE LI++KIHPQTIIAGWR+A+K A  AL + A D+ +D  KFR DLMNIA TTLSSK+LT H++HFT+LAV AV+RLKGSGNLEAI IIKKLGGSL DS+LDEGFLLDKKIG NQPKRIENA ILI NT MD DKIK+FGSRVRVDS AKVAE+E AEKEKMK+KV  IL HG+NCFINRQLIYNYPEQLF  AGVMAIEHADF GVERLALVTGGEI STF +PE+VK+G CK
Sbjct:    5 SLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDA----SLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCK 347

HSP 2 Score: 350.517 bits (898), Expect = 1.062e-108
Identity = 166/223 (74.44%), Postives = 201/223 (90.13%), Query Frame = 3

Query: 1998 VMAIEHADFEGVERLALVTGGEIVSTFHNPEMVKVGKCKLIEEVIIGEDRLIHFSGVEMGEACSVVLRGATKQILDEADRSLHDALCVLQQTVKETRIVFGGGCSEMVMANAVSKLAQETPGKESMAIDAFANALRQLPTIIADNAGYDSSELISQLRAAHTTGNSTAGLDMNQGEIGDMVELGITESFKVKYRVLTAAAEAAEMILRVDDIIKAPPRPRGSD 2666
            VMAIEHADF GVERLALVTGGEI STF +PE+VK+G CKLIEEV+IGED+LIHFSGV +GEAC++VLRGAT+QILDEA+RSLHDALCVL QTVK++R V+GGGCSEM+MA+AV++LA  TPGKE++A++++A ALR LPTIIADNAGYDS++L++QLRAAH+ GN+TAGLDM +G IGDM  LGITESF+VK +VL +AAEAAE+ILRVD+IIKA PR R  D
Sbjct:  309 VMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVPD 531

The following BLAST results are available for this feature:

BLAST of TCONS_00022949 vs. Swiss-Prot (Human)

BLAST of TCONS_00022949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TCPB	5.383e-160	76.95	T-complex protein 1 subunit beta OS=Homo sapiens G...	[more]

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TCONS_00022949 (transcript) - C. hemisphaerica