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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022950 ID=TCONS_00022950|Name=TCONS_00022950|organism=Clytia hemisphaerica|type=transcript|length=2312bp ANTGAAATACCATCACAGAACTGTCTTTTCCATTATATTAAATTTAGGAG TCCTGGGTATATCGCTTTACATTTTAACAATGGAATAATCTTAACACTGT GTGGATGGGAAAGATTTGTAAGGATAAGATCTTCCTAAAAAGAATTTTAA ATGTCAATATGATTTTTGTGGATTTtgagttgtttttctttcaaagaaaa tctcaaaatcttaAGCCTGAATGCCTCATCTTCTTGTAAATCTTAATTCA ACAATATCTTCGCAGCGATAGTAATGTTCACGATCTTATCTTTTTATTTC TCGtttagatttcaaataaaaagaaaaagcaaaaaaagaaacaaaacaga aagaatGAGTGATTCGAGTCATTTATCATGTGGTCGTGATTTCCATGCTG TTCCTGATATTCGGTTGGTGTTAAACAATGCTTCAAGCGCTGGCTTCGAT TTCATATGTGCTCCTATAGCTCATCCAAGATATCGCCGAGAACTGGTTGA TAAAAGTGGTCCTGTTCGGCCTGGTGCTTTTACTCGGACTGACCTTCTCC TTCCTGGGTCCGATTGGAGTAGTTTGGTGGTTGGGAAAATCTCACCCTGG ATTGATCTAGATTCACCATGTGAAGTCACCAGGAAAAACAGCTCACTTGC TATACAACAAGAATTGAATTTTGCTACCCATCTCAGCATGCCTGCCATCT TGATGAAACTTCGTGGTATGGAGAATGCAAACTTGGCCCACGTCATCAAT AATACAATCCATGGTACACATGTCCAACAAATCTGGCTCCAAGTTCCGTT TTGTAACCCGAAAAGTCTGGTTGATCACAGTTTGATTCAAAGTACCAAAG AAAATGGTTGTGAAGTTGCTGTTGAACGAAATGTGGATGACACTTGGGAA TGGTGGAACCAGGTTCGAAATCTGTGTGATAACAATCGTAAGCTAGCTCC TGTACTAATTCTTAATTCCAAGTCCATCACTTTAGATGATAAAGCCAAAC GTTGGATGGGTGAACCATTGAAAGCGATCGTCCTTCCTTCCAATATTTTC TTGTCCAATAAAATGGGTTATCCAGTTCTCAGCAAAGATCTTCAGAATGT CGTTTCCgcctttttcaaacaaaacgtACAATTCATCATTTCGGGTGCCC CTCTTCACAAAAATATTGTCTACTATTATCAATATTTGGATCATTTGTAT AAGAAACGCCAGACTGACTTTGTCGAGCAGTTCTCGAAAGGTTACGAAGA TTACTTACAAACGCCATTACAGCCTTTGATGGATAACCTGGAATCTCAAA CTTATGAAGTTTTCGAGAAAGACCCGGTCAAATATCAAGAGTATCAAAAC GCAGTCCACAAAGCTCTCCTCGACCGTGTGCCGGATGATAAAGTTGATGA GATGGTGACCACTATTATGGTGGTTGGGGCGGGACGAGGCCCCTTGGTCC GCGCTTCTTTCAATGCCGCCCGTGATGCAGGGCGTAAAGTCAAAATGTAC GCTGTAGAGAAGAATCCGAACGCCATCGTCACATTAGAGACACTGAATAA GGAGGAATGGAATAATACCGTAACCGTTGTTTCATGTGATATGCGTCATT ACAAAGCACCGGAGAAAGCTGATATTTTGGTTAGTGAACTATTAGGTTCG TTTAGTGATAACGAACTATCTCCAGAATGTATCGATGGTGCTCAACGCTT TCTGAAGGAAGACGGCATTAGTATTCCGTGTTCCTACACTTCTTATGCTA CACCCTTATCCGCTGCTAAACTTCATTCGGAAGTCGCCGGTACCGCTGAA GTCGGGAAAATCCCTGATGCACCGTTCGAAGCACCGTACGTAGTCCGTCT ACAAAACGTAACATACCTCGATACACCGAAGCCCGTTTTCACGTTCAACC ACCCGAACTTCAAAGACGACCCTATAGACAATGAACGATACATCAAGTTA GAATTCCAATCTAAGGAATCAACAATGATTCACGGTGTCGCTGGTTTTTT CGATATGGTCCTTTACAAAGATGTGGTGCTCAGCATCGTCCCTGAAACAG CATCGCCGGGGATGTTCAGTTGGTTTCCAGCATATTTTCCGATCAAGAAG CCGATTTATTGTCCTAAAGGCGGTACCATCACTCTCCATTTCTGGCGCAA AGTATCGAAGACGAAAGTATGGTATGAGTGGTGTTATACTTCACCTACAC ACACTGCTATCCATAACCCAAACGGACGCTCGTATTGGATTGGAATCGTT TAGACTGTTTTCTTCGtttTggtataaaaataagaaaatacaaTCCTACA GCACAATGCCCT Run BLAST on NCBI protein sequence of TCONS_00022950-protein >TCONS_00022950-protein ID=TCONS_00022950-protein|Name=TCONS_00022950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
MFTILSFYFSFRFQIKRKSKKRNKTERMSDSSHLSCGRDFHAVPDIRLVL NNASSAGFDFICAPIAHPRYRRELVDKSGPVRPGAFTRTDLLLPGSDWSS LVVGKISPWIDLDSPCEVTRKNSSLAIQQELNFATHLSMPAILMKLRGME NANLAHVINNTIHGTHVQQIWLQVPFCNPKSLVDHSLIQSTKENGCEVAV ERNVDDTWEWWNQVRNLCDNNRKLAPVLILNSKSITLDDKAKRWMGEPLK AIVLPSNIFLSNKMGYPVLSKDLQNVVSAFFKQNVQFIISGAPLHKNIVY YYQYLDHLYKKRQTDFVEQFSKGYEDYLQTPLQPLMDNLESQTYEVFEKD PVKYQEYQNAVHKALLDRVPDDKVDEMVTTIMVVGAGRGPLVRASFNAAR DAGRKVKMYAVEKNPNAIVTLETLNKEEWNNTVTVVSCDMRHYKAPEKAD ILVSELLGSFSDNELSPECIDGAQRFLKEDGISIPCSYTSYATPLSAAKL HSEVAGTAEVGKIPDAPFEAPYVVRLQNVTYLDTPKPVFTFNHPNFKDDP IDNERYIKLEFQSKESTMIHGVAGFFDMVLYKDVVLSIVPETASPGMFSW FPAYFPIKKPIYCPKGGTITLHFWRKVSKTKVWYEWCYTSPTHTAIHNPN GRSYWIGIV Run BLAST on NCBI transcript from alignment at sc0000437:266477..269017+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022950 ID=TCONS_00022950|Name=TCONS_00022950|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at sc0000437:266477..269017+ (Clytia hemisphaerica) ANTGAAATACCATCACAGAACTGTCTTTTCCATTATATTAAATTTAGGAG
TCCTGGGTATATCGCTTTACATTTTAACAATGGAATAATCTTAACACTGT
GTGGATGGGAAAGATTTGTAAGGATAAGATCTTCCTAAAAAGAATTTTAA
ATGTCAATATGATTTTTGTGGATTTtgagttgtttttctttcaaagaaaa
tctcaaaatcttaAGCCTGAATGCCTCATCTTCTTGTAAATCTTAATTCA
ACAATATCTTCGCAGCGATAGTAATGTTCACGATCTTATCTTTTTATTTC
TCGtttagatttcaaataaaaagaaaaagcaaaaaaagaaacaaaacaga
aagaatGAGTGATTCGAGTCATTTATCATGTGGTCGTGATTTCCATGCTG
TTCCTGATATTCGGTTGGTGTTAAACAATGCTTCAAGCGCTGGCTTCGAT
TTCATATGTGCTCCTATAGCTCATCCAAGATATCGCCGAGAACTGGTTGA
TAAAAGTGGTCCTGTTCGGCCTGGTGCTTTTACTCGGACTGACCTTCTCC
TTCCTGGGTCCGATTGGAGTAGTTTGGTGGTTGGGAAAATCTCACCCTGG
ATTGATCTAGATTCACCATGTGAAGTCACCAGGAAAAACAGCTCACTTGC
TATACAACAAGAATTGAATTTTGCTACCCATCTCAGCATGCCTGCCATCT
TGATGAAACTTCGTGGTATGGAGAATGCAAACTTGGCCCACGTCATCAAT
AATACAATCCATGGTACACATGTCCAACAAATCTGGCTCCAAGTTCCGTT
TTGTAACCCGAAAAGTCTGGTTGATCACAGTTTGATTCAAAGTACCAAAG
AAAATGGTTGTGAAGTTGCTGTTGAACGAAATGTGGATGACACTTGGGAA
TGGTGGAACCAGGTTCGAAATCTGTGTGATAACAATCGTAAGCTAGCTCC
TGTACTAATTCTTAATTCCAAGTCCATCACTTTAGATGATAAAGCCAAAC
GTTGGATGGGTGAACCATTGAAAGCGATCGTCCTTCCTTCCAATATTTTC
TTGTCCAATAAAATGGGTTATCCAGTTCTCAGCAAAGATCTTCAGAATGT
CGTTTCCgcctttttcaaacaaaacgtACAATTCATCATTTCGGGTGCCC
CTCTTCACAAAAATATTGTCTACTATTATCAATATTTGGATCATTTGTAT
AAGAAACGCCAGACTGACTTTGTCGAGCAGTTCTCGAAAGGTTACGAAGA
TTACTTACAAACGCCATTACAGCCTTTGATGGATAACCTGGAATCTCAAA
CTTATGAAGTTTTCGAGAAAGACCCGGTCAAATATCAAGAGTATCAAAAC
GCAGTCCACAAAGCTCTCCTCGACCGTGTGCCGGATGATAAAGTTGATGA
GATGGTGACCACTATTATGGTGGTTGGGGCGGGACGAGGCCCCTTGGTCC
GCGCTTCTTTCAATGCCGCCCGTGATGCAGGGCGTAAAGTCAAAATGTAC
GCTGTAGAGAAGAATCCGAACGCCATCGTCACATTAGAGACACTGAATAA
GGAGGAATGGAATAATACCGTAACCGTTGTTTCATGTGATATGCGTCATT
ACAAAGCACCGGAGAAAGCTGATATTTTGGTTAGTGAACTATTAGGTTCG
TTTAGTGATAACGAACTATCTCCAGAATGTATCGATGGTGCTCAACGCTT
TCTGAAGGAAGACGGCATTAGTATTCCGTGTTCCTACACTTCTTATGCTA
CACCCTTATCCGCTGCTAAACTTCATTCGGAAGTCGCCGGTACCGCTGAA
GTCGGGAAAATCCCTGATGCACCGTTCGAAGCACCGTACGTAGTCCGTCT
ACAAAACGTAACATACCTCGATACACCGAAGCCCGTTTTCACGTTCAACC
ACCCGAACTTCAAAGACGACCCTATAGACAATGAACGATACATCAAGTTA
GAATTCCAATCTAAGGAATCAACAATGATTCACGGTGTCGCTGGTTTTTT
CGATATGGTCCTTTACAAAGATGTGGTGCTCAGCATCGTCCCTGAAACAG
CATCGCCGGGGATGTTCAGTTGGTTTCCAGCATATTTTCCGATCAAGAAG
CCGATTTATTGTCCTAAAGGCGGTACCATCACTCTCCATTTCTGGCGCAA
AGTATCGAAGACGAAAGTATGGTATGAGTGGTGTTATACTTCACCTACAC
ACACTGCTATCCATAACCCAAACGGACGCTCGTATTGGATTGGAATCGTT
TAGACTGTTTTCTTCGtttgtattgattttttttctcgaaaagaaATGAT
AAATAAATTCTTAGTCTCGATATCTCTGTTTTGCGCTCAACGCAATTTTC
TGACTTACCAATTTCGATGTGATTCTTCAGTTGGATGTCTGTTATGGTTT
AATGTTTCGTAATTATCCAGTCTTCTAATAACTCATTTTAACCTACTGCT
GTTTCTGTGTATTGAGGCACTTTCTATGCTAATTTATATTCTTTTTAGTg
gtataaaaataagaaaatacaaTCCTACAGCACAATGCCCT Coding sequence (CDS) from alignment at sc0000437:266477..269017+ >TCONS_00022950 ID=TCONS_00022950|Name=TCONS_00022950|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0000437:266477..269017+ (Clytia hemisphaerica) ATGTTCACGATCTTATCTTTTTATTTCTCGtttagatttcaaataaaaag aaaaagcaaaaaaagaaacaaaacagaaagaatGAGTGATTCGAGTCATT TATCATGTGGTCGTGATTTCCATGCTGTTCCTGATATTCGGTTGGTGTTA AACAATGCTTCAAGCGCTGGCTTCGATTTCATATGTGCTCCTATAGCTCA TCCAAGATATCGCCGAGAACTGGTTGATAAAAGTGGTCCTGTTCGGCCTG GTGCTTTTACTCGGACTGACCTTCTCCTTCCTGGGTCCGATTGGAGTAGT TTGGTGGTTGGGAAAATCTCACCCTGGATTGATCTAGATTCACCATGTGA AGTCACCAGGAAAAACAGCTCACTTGCTATACAACAAGAATTGAATTTTG CTACCCATCTCAGCATGCCTGCCATCTTGATGAAACTTCGTGGTATGGAG AATGCAAACTTGGCCCACGTCATCAATAATACAATCCATGGTACACATGT CCAACAAATCTGGCTCCAAGTTCCGTTTTGTAACCCGAAAAGTCTGGTTG ATCACAGTTTGATTCAAAGTACCAAAGAAAATGGTTGTGAAGTTGCTGTT GAACGAAATGTGGATGACACTTGGGAATGGTGGAACCAGGTTCGAAATCT GTGTGATAACAATCGTAAGCTAGCTCCTGTACTAATTCTTAATTCCAAGT CCATCACTTTAGATGATAAAGCCAAACGTTGGATGGGTGAACCATTGAAA GCGATCGTCCTTCCTTCCAATATTTTCTTGTCCAATAAAATGGGTTATCC AGTTCTCAGCAAAGATCTTCAGAATGTCGTTTCCgcctttttcaaacaaa acgtACAATTCATCATTTCGGGTGCCCCTCTTCACAAAAATATTGTCTAC TATTATCAATATTTGGATCATTTGTATAAGAAACGCCAGACTGACTTTGT CGAGCAGTTCTCGAAAGGTTACGAAGATTACTTACAAACGCCATTACAGC CTTTGATGGATAACCTGGAATCTCAAACTTATGAAGTTTTCGAGAAAGAC CCGGTCAAATATCAAGAGTATCAAAACGCAGTCCACAAAGCTCTCCTCGA CCGTGTGCCGGATGATAAAGTTGATGAGATGGTGACCACTATTATGGTGG TTGGGGCGGGACGAGGCCCCTTGGTCCGCGCTTCTTTCAATGCCGCCCGT GATGCAGGGCGTAAAGTCAAAATGTACGCTGTAGAGAAGAATCCGAACGC CATCGTCACATTAGAGACACTGAATAAGGAGGAATGGAATAATACCGTAA CCGTTGTTTCATGTGATATGCGTCATTACAAAGCACCGGAGAAAGCTGAT ATTTTGGTTAGTGAACTATTAGGTTCGTTTAGTGATAACGAACTATCTCC AGAATGTATCGATGGTGCTCAACGCTTTCTGAAGGAAGACGGCATTAGTA TTCCGTGTTCCTACACTTCTTATGCTACACCCTTATCCGCTGCTAAACTT CATTCGGAAGTCGCCGGTACCGCTGAAGTCGGGAAAATCCCTGATGCACC GTTCGAAGCACCGTACGTAGTCCGTCTACAAAACGTAACATACCTCGATA CACCGAAGCCCGTTTTCACGTTCAACCACCCGAACTTCAAAGACGACCCT ATAGACAATGAACGATACATCAAGTTAGAATTCCAATCTAAGGAATCAAC AATGATTCACGGTGTCGCTGGTTTTTTCGATATGGTCCTTTACAAAGATG TGGTGCTCAGCATCGTCCCTGAAACAGCATCGCCGGGGATGTTCAGTTGG TTTCCAGCATATTTTCCGATCAAGAAGCCGATTTATTGTCCTAAAGGCGG TACCATCACTCTCCATTTCTGGCGCAAAGTATCGAAGACGAAAGTATGGT ATGAGTGGTGTTATACTTCACCTACACACACTGCTATCCATAACCCAAAC GGACGCTCGTATTGGATTGGAATCGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00022950-exon-sc0000437-1491911889:266477..268745 | TCONS_00022950-exon-sc0000437-1491911889:266477..268745 | Clytia hemisphaerica | exon |
TCONS_00022950-exon-sc0000437-1510915933:266477..268745 | TCONS_00022950-exon-sc0000437-1510915933:266477..268745 | Clytia hemisphaerica | exon |
TCONS_00022950-exon-sc0000437-1575043694:266477..268745 | TCONS_00022950-exon-sc0000437-1575043694:266477..268745 | Clytia hemisphaerica | exon |
TCONS_00022950-exon-sc0000437-1491911889:268975..269017 | TCONS_00022950-exon-sc0000437-1491911889:268975..269017 | Clytia hemisphaerica | exon |
TCONS_00022950-exon-sc0000437-1510915933:268975..269017 | TCONS_00022950-exon-sc0000437-1510915933:268975..269017 | Clytia hemisphaerica | exon |
TCONS_00022950-exon-sc0000437-1575043694:268975..269017 | TCONS_00022950-exon-sc0000437-1575043694:268975..269017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000437 | supercontig | sc0000437:266477..269017 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008168 | methyltransferase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0035246 | peptidyl-arginine N-methylation |
GO:0006479 | protein methylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0035246 |
peptidyl-arginine N-methylation |
biological_process |
GO:0006479 |
protein methylation |
molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
BLAST of TCONS_00022950 vs. Swiss-Prot (Human)
Match: ANM5 (Protein arginine N-methyltransferase 5 OS=Homo sapiens GN=PRMT5 PE=1 SV=4) HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0 Identity = 337/631 (53.41%), Postives = 439/631 (69.57%), Query Frame = 1
Query: 367 SHLSCGRDFHAVPDIRLVLNNASSAGFDFICAPIAHPRYRRELVDKSGPVRPGAFTRTDLLLPGSDWSSLVVGKISPWIDLDSPCEVTRKNSSLAIQQELNFATHLSMPAILMKLRGMENANLAHVINNTIH-GTHVQQIWLQVPFCNPKSLVDHSLIQSTKENGCEVAVERNVDDTWEWWNQVRNLCDNNRKLAPVLILNSKSITLDDKAKRWMGEPLKAIVLPSNIFLSNKMGYPVLSKDLQNVVSAFFKQNVQFIISGAPLH--KNIVYYYQYLDHLYKKRQT-DFVEQFSKGYEDYLQTPLQPLMDNLESQTYEVFEKDPVKYQEYQNAVHKALLDRVPDDKVDEMVTTIMVVGAGRGPLVRASFNAARDAGRKVKMYAVEKNPNAIVTLETLNKEEWNNTVTVVSCDMRHYKAPEKADILVSELLGSFSDNELSPECIDGAQRFLKEDGISIPCSYTSYATPLSAAKLHSEVAGTAEVGKIPDAPFEAPYVVRLQNVTYLDTPKPVFTFNHPNFKDDPIDNERYIKLEFQSKESTMIHGVAGFFDMVLYKDVVLSIVPETASPGMFSWFPAYFPIKKPIYCPKGGTITLHFWRKVSKTKVWYEWCYTSPTHTAIHNPNGRSYWIGI 2247
S +S GRD + VP+I L + GFDF+C P+ HPR++RE + + RPG TR+DLLL G DW++L+VGK+SPWI DS E R+NS A+ QELNF +L +PA L+ L +N NLA V+ N IH G H W++VP P+ L D + + + E + E + TW WW+ R LCD ++++A L + + + + RW+GEP+KA +LP++IFL+NK G+PVLSK Q ++ K VQFII+G H K Y QYL++L + R + E F+KGYEDYLQ+PLQPLMDNLESQTYEVFEKDP+KY +YQ A++K LLDRVP+++ D V +MV+GAGRGPLV AS AA+ A R++K+YAVEKNPNA+VTLE EEW + VTVVS DMR + APEKADI+VSELLGSF+DNELSPEC+DGAQ FLK+DG+SIP YTS+ P+S++KL++EV E + P+A FE PYVVRL N L P+P FTF+HPN +D IDN RY LEF + +T++HG AG+F+ VLY+D+ LSI PET SPGMFSWFP FPIK+PI +G TI + FWR + KVWYEW T+P +AIHNP GRSY IG+
Sbjct: 12 SRVSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLLSGRDWNTLIVGKLSPWIRPDSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDNTNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGE---EKTWMWWHNFRTLCDYSKRIAVALEIGA-DLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQRLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSPLQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREKDRDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPN-RDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVWYEWAVTAPVCSAIHNPTGRSYTIGL 637
The following BLAST results are available for this feature:
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