TCONS_00022976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022976
Unique NameTCONS_00022976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022976 ID=TCONS_00022976|Name=TCONS_00022976|organism=Clytia hemisphaerica|type=transcript|length=1172bp
CTAAAAGTCATAAACCTAAACCCCATTGCAGAAAACACCTCGAAAGTCAG
CGAAAGTTGAAGTCTCGAAGTCAAGAACAGCAATGAGAATGGGCTAATTT
CATATGGTTTTATTGCTTGTCTATATATTATCTTAGTTATGAGATAGTca
taaatttaataaaatgtCTTTTTCAAGAGACAAGCCCTCAGAATGGATGC
ATNCCTCGAAAGTCAGTGAAAGTTGAAGTCTCGAAGTCAAGAACAGCAAT
GAGAATGGGCTAATTTCATATGGTTTTATTGCTTGTCTATATATTATCTT
AGTTATGAGATAGTcataaatttaataaaatgtCTTTTTCAAGAGACAAG
CCCTCAGAATGGATGCATGTCGAGCTGAAAAGGTTCAAAAATCAGCTTCC
CATCAACCGACCATCCAAGAAATCTGTTGACAAATCACTTTCAATTGTGA
AAAGCAGTTTGGTGGGCCTTGCGAAACATCAATTTGAACTGGTTGTAACT
TCATTAGTACATTACATTAAAGATATTCCAACAATTAATTTGTTACCCAT
AGAACAACAACCACTTGCAATCCAATCAAACTTGATTGTGGTTACGACAA
TTGAGCATTGCTTTGAAAAGCATTCTGAAGAAAGCTCATCATTATCGGAT
GAAACAGTGAAAAGACAACTCTTGAATACTCTGTGCAGCCTGATAATTCA
TCCAGATGCATTCAACGAAGCTAACCAGAAAGTTGGCAGACATGTTGGAA
ATATCATCTATTTTATCAGTAAACATCACTTCTCATCAGTGTTCAGTAGG
ATTGTTGAGAGGTTGTACTCTTTGGTAGAAAACAATGAGGACAGTACTAT
TGCAGATAATTTGGAATTGATACGATACTTACATGTTCCTATAGAAGGAC
TTAAATGCTTGTTTGAAGaatgcggaaaacattttaaatttctaaagaaA
TATTCTCAACAAGTTGTCCTGAAAGGCTTATGCAAGTCCATATGGAATTG
GATTGAAACCTACCCTGAACAGTTTTGCAAcatttataaaaatccaaata
cCCAACTATCAGaacTTAGTGAAAAGCTTTTTCAACTGGTGGAAAATTGG
TCCGAAAACTCGAAAAAAAGATCAATATCATGGCCACTGCAAGGATTGCT
TCTCCTTCTCTCACCTGTATGT
Run BLAST on NCBI

protein sequence of TCONS_00022976-protein

>TCONS_00022976-protein ID=TCONS_00022976-protein|Name=TCONS_00022976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MSFSRDKPSEWMHVELKRFKNQLPINRPSKKSVDKSLSIVKSSLVGLAKH
QFELVVTSLVHYIKDIPTINLLPIEQQPLAIQSNLIVVTTIEHCFEKHSE
ESSSLSDETVKRQLLNTLCSLIIHPDAFNEANQKVGRHVGNIIYFISKHH
FSSVFSRIVERLYSLVENNEDSTIADNLELIRYLHVPIEGLKCLFEECGK
HFKFLKKYSQQVVLKGLCKSIWNWIETYPEQFCNIYKNPNTQLSELSEKL
FQLVENWSENSKKRSISWPLQGLLLLLSPVC
Run BLAST on NCBI

transcript from alignment at sc0000437:103331..116707-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022976 ID=TCONS_00022976|Name=TCONS_00022976|organism=Clytia hemisphaerica|type=transcript|length=13377bp|location=Sequence derived from alignment at sc0000437:103331..116707- (Clytia hemisphaerica)
CTAAAAGTCATAAACCTAAACCCCATTGCAGAAAACACCTCGAAAGTCAG
CGAAAGTTGAAGTCTCGAAGTCAAGAACAGCAATGAGAATGGGCTAATTT
CATATGGTTTTATTGCTTGTCTATATATTATCTTAGTTATGAGATAGTCA
TAAATTTAATAAAATGTCTTTTTCAAGAGACAAGCCCTCAGAATGGATGC
ATNCCTCGAAAGTCAGTGAAAGTTGAAGTCTCGAAGTCAAGAACAGCAAT
GAGAATGGGCTAATTTCATATGGTTTTATTGCTTGTCTATATATTATCTT
AGTTATGAGATAGTCATAAATTTAATAAAATGTCTTTTTCAAGAGACAAG
CCCTCAGAATGGATGCATGTCGAGCTGAAAAGGTTCAAAAATCAGGTATA
CCTTTGTGATTTTATTCTCTCTTTCACAAAAATAATCTGTTCCCACTCTT
TGTCTATACTTTGCCTCTTTGTCCTTTGTTTCAGTAGACCTCTTGTGGAG
CTTGTTATTTAGGCAGGCATAGACCTTTTCCTTTTTTCATTTGGCATCTT
GTGTAATAAAAAAGCCCTTGTTGGAATTATTTTGTTCAATCGCCACGTAC
GCACGTACACACAAACACTCGTGAAATATTTTGTTATCCAATCACCGTTG
TCTTATTTTACCCAATCAAAAAATTGCTTTGCGATTGTTTGAAAAGAAGT
ATACAATCGAATGAAGGTAGAGCCACGGTGTTGGACTTTGATTGAAATGT
GTGTGTTAGTGTTGGATCGAGAAAATAAGTTTAATTACCAACGTTTAAAC
TTAAATGTAAATTACTTACTTACTTCGTGATACTTCGTTTTTGATTTTGC
ACTTTATGGTACCGTCAACTGCTCCAACTTCGGACTATCGCAGGCGTAGT
TAATCGATATAATTGATAATCTTGAGTTAGTAATAGATAAATAATCGATA
AATAATCGATGGATTAGATATATCTATTAACCAATAGAATCGATAGGTAA
TCAGACCTTAAAAAAATCTTGAGTATCGATCAGCGATCGATTATTTCCAA
GCTATCGATTACTTATCGATCACATATCGACTACATACAACCTATCGTAC
TTATCAATAGACCTTTTCGCCTTTCCATCCGCCATAGGGCCAAATTGAAA
AGTCCCGTTCCTGTCACGGAAGGAAATCAGAGCCTTTTTTGGTCTTTTTT
TGAAAAATGGTAAAATGAATGAAAATAGTATTAGTCCTGAATTNNNNNNN
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TAGCATATTTCCATGGTGCTGAAGCGATTTAGAGGATTTAGAACCAGCTA
GGAACAGTAGTTTTGCCAGAAAACCGGTTTTTAGGCCTCATGAGCCGCCT
GGGCTTTACGCTGTAAGCTTACAGCGCTGTACTGGAGCCTTAGATTTAAG
CTTATTCTGAGCTCCATACAAGGCTGAGCTGGTTCCCAATGGTCATAAAC
CTTGAAGGACACTCCCCTGCAATGGACTAGACCCATTTAAGTCCAGCGAA
GGGGGCAGAACCGACAAATTTTCATNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNACCTGTTATGACAGAAAGTATGATTGATAAACTTGGTG
GAGTTATCAAAACAAATTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAA
TACAGACCAGAAATCAACAAGTCCCATGTTGCGTACACTCGTCCCAAGTT
GGAGCAGTTGACGGTACTCATCCAATTCGTGGAATCCAATGATTGACCAT
TACTGATATACTGTTGGAATCAGCTCTCCTGAAGTTGAAATAATTAGGAA
GCAGTGGTTTGTCTGGCAGTGTATTCAGGAATTGTTCAAGATGTTGTTTA
AAAGTTTGTTTGGTACATTTTGTAAGGTTTCGAAGGGATTTTGGCAGAGC
GTTAAAAAGTCTTGGTCCTTCCTGTGAGAGACAATCTCTATTTTTATGTT
TGACATTAACAGCTTTTGAATTACATTTTCTACCCAGTCTCTGGTTTGTG
CACGCCGCCTGCATCATCGCTGTAATTGAAGTTTGGAGTGATATCTTCTA
GTATGCACCATGTGTAGATTATTCTGTACCTTTCTCTTCTTCTTTCAAGA
CTGTATATTTTCAGTTGACTCAATTTTTCCCAATAATTCAACTGGTTCAA
CGAAAAATGCCGTTCAAAAATGATTTTTGCAGTAGCTCCAATTGTTGGAT
GAGGCATCGCTTTGACGAAGACCATAGTTGGGAGCAATAGTCAAGATGTG
GAATAGCAAGTGACTTCCAAAGGGTTAGCATTACATCAGTGTTCCATGTC
TTGAAGGTTCGGAATATCCATGAGCTGATGGCTTTGACTTTGCTGATTTG
ATTTTGGATGTGTTGACTGTAGCTCATATCTACATCCAAAGTGAACTCCA
AGGTCTTTGACTTGGTTTTTGGTTTCAATTTGGTCCTGGGTATCAGAATA
ATAAACTGAATTTGGTTTCAGCTCTTCATTTTTCCCATAACACATTATGT
TCGAATTTCAGTCCATTGAGTTGCATGTTATTGATCTCTGACCATTTGTA
TACCCTATTGAGGTCACTTTGAAGAAGCTGAACATCATCTTGACTGGACA
CTTCTTTCAGCAGTCGTGTATCGTCCGCAAATGAGGACAGCACTGTATGA
TAAATATCTTCATCAATATCCTAAATCATCACAAGAAACAGGAGGGACAC
AGTACGGAGCCTTGGGGCACCCCAGATAAAACATCTGCACTTTTGGAAAG
CCTTGCGTTGACTGAGACTCTGTGTTCTCTTTGTTAGGAACGATTTAATC
CAACAGAGAAGTTTTCCACAAATGCCATTTCTTTCAAGTTTATGCAGAAG
TATTGAGTGGTCAACCCGATCGAATGCTGCTTTACTGAAGTCAAGGTAGA
TAACATCTACGCTGTCGCCAATTTCGATATGATGAATCAATCGTTCAATG
TGGGCAAGCAAGTAATTGGCTAAGGCAGGATCTTTCTGACCTAAATCCGT
GTTGGTTAGTATTATATAGGTTGTTTCTTTCCAGGTGGTCTTGCATGTTT
TTTCTTACAATCTTTTCAAAAACTTTGGTTACATGTGATGTAAGAGCAAC
AGGGCGGTAGTTTTCTGGTAATTCTTGATTTCCTTTTTTAAATATTGGGG
TGGATGTAACTTGTTTTAAGTATCTTTGGGGTGAATCCTTTATCATGGAT
ATTCTGACATATCAGCTTGAGTGGTTTTGCAAGCTGTGACTTGCTTTTAA
GGAGAAACATAGCTGGAAAGCCATCTGGACCAGCAGCTGAGTTAGGAGAG
AGGGTTTGTATTTCTCTAATGAAATCTTCCTCTGTGAAGTCAACATAATC
AAGTTTCTCGGTCACTTGTGAAGGGCTGAGATTGGGGTTGTCATATTGGG
GTTTTGGTGGTGTGAATACAGATGTATATTGGTCTTGAAGTATATTGGCC
ATCTGAAGATTGTTGTCTGCTAGCTTATTTGTAGTAGGATCCAATAACGG
TCCAACTTTAGGTTTGGTTTGAGAAAATCTTTTTGCATAAGAGTAGAAGA
ACTTGGGGTTCACTTTGATTTTTGAGATTGCATCTAGCTCTTGATTGTGC
CTTTCGTTTGTATAACTGGTTTGTAATTTTAGCTCAATCAAACAATATCT
ATCAGTTTTGACTTTGTGTCCTTGTTGGGCTTTCTTTTCTTCAGTTTCTT
TCTTTTTCGCATAAGAATACGACGATCGCGTGGAACAATCTTTTTCTTTA
ATGGCTTTCGAAGTGGAATGCTGTTTGTGGTGATAACGCCAATGCATTTC
TTGATGAATACATTATATTGCTCATCAGGGTTAGAGTCAGAAGTTTTAAA
ATACTGCCCCAATCAATATCATCCAAAGTTTTATTGATTTTTCCCAGTCT
ATTTTTTCACTGTAAAAGTTGAATTTGTCAAAATCATTGTTAATTTTTTT
TCTCTGAATCAGTAGTTGATGTCGTCTTGTTAAAGGATAAGTGTCTAACA
ACCTCAATGTTGAAGTGATCTGAATATATAGTAGGTGATGCATTTGCACA
TGGTCTCGTGTAATTTTTGTTTTGTAAAGTTTGATTTCTCACGCATTTTG
AATTTTTGAGAAAATTTTTCCTGTTTTTCCAATTTTTGGAAAAAAGTTTT
CCCAATTTCCCGATTTCCTGATTTTCCGAAAAAAAAGTTTTCCCGATTTC
CCAATTTCCCAATTTTTGGAAAAATGTTTACCTGATTTTCCGATTTTCGG
AAAAAAGTTTCTTTATTTTACGGATTTTTCTAGGTAGTGCCCGGTAGTAA
ATGGGGGGTATGGGGTGGTTTTGGTTTTTTTCCAGGTACTACCCAGTAGT
AAATAAGGGGTATGGGGTGGTTTTGGGATTTTTCCATGTAGTATGGTGTA
CTTCAGGGGTGGGTGGGTGTCAAGTTTTGAAAAATACCTTGTAGTACACA
TACATGCCGCCTTCTAGTACACTGACCCCCCCTGTTCAGAAGGTGCTCAA
AAACATAAAATTATGTTAAAATCAGTCAGTCCAATGGTTTTCTTTTTACA
GTCATGATGCCAATGACATCAATTTGAAATTGTTTTTTCAAGTAAAGAGG
CATCAATGCTGAAGTTTATAGTTTTGTATTACATTAATCAAAATATTAAG
GGAAATTGCAAAAAAAATTTCCAGCTGCCTGTTTGAGATTTCTTTTTGTC
AGAAAAAGGTAAAAAAACAAACTACTTTCTCCTAGTCTAACCAGTTAGAT
CCATAATAATATCTCTTTTTTTTCTTTTTTTCTGTGATTGAAGAGCAAAG
AGAGCAGTTTTAATAATCGCTTTTTTATTTATATGATTCAGCTTCCCATC
AACCGACCATCCAAGAAATCTGTTGACAAATCACTTTCAATTGTGAAAAG
CAGTTTGGTGGGCCTTGCGAAACATCAATTTGAACTGGTTGTAACTTCAT
TAGTACATTACATTAAAGATATTCCAACAATTGTAAGTTTACATAATCCT
GTATGAAATCAAATTGGAAATCTAAACCTTGCTTGAATTACAATGGAATA
AAAATATTAAAAGTTTAAATTAGGGTATTGTATTCATGATATTATAGCTA
TGCATCGGTTTTGTATTTTGAAGTTTATTCTCTAACTTCAATATCTACTA
CCAGGCCATTTTTTATGCCCTTTTAGCGTCCGATGACCGGACGCTGCCCC
TCCTGAAATCACTAAAATTTTGGTAAAAACAGCCTTTTTAGCGGAAAAAC
ACAAGAAAAAGTGCCCTTTGTGCCACCAATGGACGCTGCCCTGCCTTTCT
AAAATATGGCCTGACTACTTCTTGTTTCCCAACTGGAAAAAGTTTTGTAT
CAGTACAACATTTCTAACCATACCCTTTGGTGTATCATAATAAGCAAGTA
CATTAATTCTTACTTCCTTTTGTTTTAGAATTTGTTACCCATAGAACAAC
AACCACTTGCAATCCAATCAAACTTGATTGTGGTTACGACAATTGAGCAT
TGCTTTGAAAAGGTAAGATAGCCAGATTATCCATATCTTAAAATAGCCTA
AAATGAGGCCAAGCCTATATCTATGAGTCTTCGAAATGATCTTTTGAAAG
ATTTTTTTTGCAAACTGAAGATGTCCACAATTTTTTCTTAATTTTTTGTA
TTCTTCTTTACTCAACAAATATTCTTTTTATGTAGCATTCTGAAGAAAGC
TCATCATTATCGGATGAAACAGTGAAAAGACAACTCTTGAATACTCTGTG
CAGCGTAAGTAATAACAATTTTATATTCAAATGGTTAAAAAATTATTCTG
TTATTACTTTTATAATTGAATATCACTACTACAAATTGAAATAACTTCTT
CAAAGAAATCATTGTATTTGAAGTAATTTTTTGGTTAAAAACTTTTCAGC
ATGGAATTTTGCTTTTTTTGACGTATTTCCGGGGGACTTATATACCAAAT
TAAATCTATTCATCAAGCTTTATCAGATTGTATAATCAGTTTCTCTAATA
CTTATTTTAATGTCCTTGCTCTATACTATATTTTTCAGCTTTGCCAGCTT
GGAAAAAACAGGTTTTGAAGTCTCAAGGGACCAATTAATGAAAAATTAAA
ATGGAAACCCATCTATACTACTTTTTAGAATTTAGAAAATATTTCATTCG
GCTGATGATTCTTGTTCATACCGATGGCATGAGACTAAGTAGTCAAAATT
TTACAAGTCTCACACTTAATGTTTTCAACATAATGGTTCAAAATCATTTT
AATCTTGTTTATTATTTTAGCTGATAATTCATCCAGATGCATTCAACGAA
GCTAACCAGAAAGTTGGCAGACATGTTGGAAATATCATCTATTTTATCAG
TAAACATCACTTCTCATCAGTGTTCAGTAGGATTGTTGAGAGGTAAGTGT
TTTTTTTATCTCTTCAACTATCCCTAATCCTTTTTCATTCAATATAACAG
GCATGACAAAAAAATTTTAATTTTGGCACAAAAATTTAGGTAATTTTACT
GACGAAAAGAGAAATTTGATTGCTTTTTAAAAATCTGATACAATGATATG
CCTTTAAAATTAATGGACAATCTTGGTTTTCTATAAAGGAACGGCCTTTT
TCAATTTGCTGTGATTGTGAAATGCTTGCAGGGACACATATCATTGATTT
TGATCATTTCTGAGGGAAGCCTTGACACAAAATATGATTTTTATGCTACA
GCAAGAGCCTGGAATCAAGGGGTGTCACAACATTTGAAAAAGTTGCAATG
TGGAATAGACTTTATTATTATTACTATGTTATTATTTTGAATTTATTTTT
TCAATTCCAGGTTGTACTCTTTGGTAGAAAACAATGAGGACAGTACTATT
GCAGATAATTTGGAATTGATACGATACTTACATGTTCCTATAGAAGGACT
TAAATGCTTGTTTGAAGGTAACTCTTCTTGTTTCTATTCTCTTTTGTAGC
TCATAGTGGAGATTTTATTAAAATACAAAAAATCGTTTGAGATTAAACCT
ATTACTTTAATAATTGATTACATATCTTGACCTTACTGAAATTTTGATAT
TAATTAGGCTGAGAATAGACCCAGTCTGACTTAAAATGAATGAATTGAAA
GTAAAAATTCTATTTTATTTGAGCTCGCTCTTTGCCCAAAGGGTTTTTCT
GGTCCTGTTTAATGTATCACTGATAGATTTTTCTTTTAAAAGAATGATAG
TTGGATCTGTTTTTTTCATTATAAACATTTTTTTCCTTTAAGAATGCGGA
AAACATTTTAAATTTCTAAAGAAATATTCTCAACAAGTTGTCCTGAAAGG
CTTATGCAAGTCCATATGGAATTGGATTGAAACCTACCCTGAACAGTTTT
GCAACATTTATAAAAATCCAAATACCCAACTATCAGGTAACTAACTAACT
TATTTGTGCTAAGGCCTGAGTGCCGTGAGGAATTTAATCTTTAGTGTATG
GTTTGTTTGCACTACAGAAAACAAATTATTTGANNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATGATTAAAC
GATTGACTTTTTATTTTAATGTTTTTTGTTTTCATAATGACCCATAAAGT
CTGTCAAAATGGAAAAATGAGCTAAAATTGCTTGATACACGGCAAATTTT
CGTTCTGTTTACTTGATATTTTTCGTGCAAATTTACATGGGATCAAAGCT
AAAGCTAAGCAAAAATTTAATTCGAAACCCGTGTATTGATATTACAAAGT
TAGATTTGTTTTGTTAGACAGGAGTCATTTATAAATCNAATTGATATTAC
AAAGTTAGATTTGTTTAGTTAGACAGGAGTCGTTTATAAATTATAATCTG
TGTACCTTATTAGAACGAATTGCACTTTTTTGCAGTTTACCCTTTTTGGA
CAAATTTCTTTCATTTTCCTAGGGATTTTTTCAGATTTTTTCAGATTTTT
TCGATAAAATTGGAATTCTCTGAATGAGTCGTCTAGCATGCTAGATTATA
TTTAGTTGACAAAAAGAAAATGCTTAGCCAACTCAAAAATAATAGTCCTA
TTTCTTTTCAAATTTAGAACTTAGTGAAAAGCTTTTTCAACTGGTGGAAA
ATTGGTCCGAAAACTCGAAAAAAAGATCAATATCATGGCCACTGCAAGGA
TTGCTTCTCCTTCTCTCACCTGTATGT

Coding sequence (CDS) from alignment at sc0000437:103331..116707-

>TCONS_00022976 ID=TCONS_00022976|Name=TCONS_00022976|organism=Clytia hemisphaerica|type=CDS|length=6744bp|location=Sequence derived from alignment at sc0000437:103331..116707- (Clytia hemisphaerica)
AACTTAGTGAAAAGCTTTTTCAACTGGTGGAAAATTGGTCCGAAAACTCG
AAAAAAAGATCAATATCATGGCCACTGCAAGGATTGCTTCTCCTTCTCTC
ACCTGTATGTAATGCGGAAAACATTTTAAATTTCTAAAGAAATATTCTCA
ACAAGTTGTCCTGAAAGGCTTATGCAAGTCCATATGGAATTGGATTGAAA
CCTACCCTGAACAGTTTTGCAACATTTATAAAAATCCAAATACCCAACTA
TCAGGTTGTACTCTTTGGTAGAAAACAATGAGGACAGTACTATTGCAGAT
AATTTGGAATTGATACGATACTTACATGTTCCTATAGAAGGACTTAAATG
CTTGTTTGAAGCTGATAATTCATCCAGATGCATTCAACGAAGCTAACCAG
AAAGTTGGCAGACATGTTGGAAATATCATCTATTTTATCAGTAAACATCA
CTTCTCATCAGTGTTCAGTAGGATTGTTGAGAGCATTCTGAAGAAAGCTC
ATCATTATCGGATGAAACAGTGAAAAGACAACTCTTGAATACTCTGTGCA
GCAATTTGTTACCCATAGAACAACAACCACTTGCAATCCAATCAAACTTG
ATTGTGGTTACGACAATTGAGCATTGCTTTGAAAAGCTTCCCATCAACCG
ACCATCCAAGAAATCTGTTGACAAATCACTTTCAATTGTGAAAAGCAGTT
TGGTGGGCCTTGCGAAACATCAATTTGAACTGGTTGTAACTTCATTAGTA
CATTACATTAAAGATATTCCAACAATTATGTCTTTTTCAAGAGACAAGCC
CTCAGAATGGATGCATGTCGAGCTGAAAAGGTTCAAAAATCAGAACTTAG
TGAAAAGCTTTTTCAACTGGTGGAAAATTGGTCCGAAAACTCGAAAAAAA
GATCAATATCATGGCCACTGCAAGGATTGCTTCTCCTTCTCTCACCTGTA
TGTAATGCGGAAAACATTTTAAATTTCTAAAGAAATATTCTCAACAAGTT
GTCCTGAAAGGCTTATGCAAGTCCATATGGAATTGGATTGAAACCTACCC
TGAACAGTTTTGCAACATTTATAAAAATCCAAATACCCAACTATCAGGTT
GTACTCTTTGGTAGAAAACAATGAGGACAGTACTATTGCAGATAATTTGG
AATTGATACGATACTTACATGTTCCTATAGAAGGACTTAAATGCTTGTTT
GAAGCTGATAATTCATCCAGATGCATTCAACGAAGCTAACCAGAAAGTTG
GCAGACATGTTGGAAATATCATCTATTTTATCAGTAAACATCACTTCTCA
TCAGTGTTCAGTAGGATTGTTGAGAGCATTCTGAAGAAAGCTCATCATTA
TCGGATGAAACAGTGAAAAGACAACTCTTGAATACTCTGTGCAGCAATTT
GTTACCCATAGAACAACAACCACTTGCAATCCAATCAAACTTGATTGTGG
TTACGACAATTGAGCATTGCTTTGAAAAGCTTCCCATCAACCGACCATCC
AAGAAATCTGTTGACAAATCACTTTCAATTGTGAAAAGCAGTTTGGTGGG
CCTTGCGAAACATCAATTTGAACTGGTTGTAACTTCATTAGTACATTACA
TTAAAGATATTCCAACAATTATGTCTTTTTCAAGAGACAAGCCCTCAGAA
TGGATGCATGTCGAGCTGAAAAGGTTCAAAAATCAGAACTTAGTGAAAAG
CTTTTTCAACTGGTGGAAAATTGGTCCGAAAACTCGAAAAAAAGATCAAT
ATCATGGCCACTGCAAGGATTGCTTCTCCTTCTCTCACCTGTATGTAATG
CGGAAAACATTTTAAATTTCTAAAGAAATATTCTCAACAAGTTGTCCTGA
AAGGCTTATGCAAGTCCATATGGAATTGGATTGAAACCTACCCTGAACAG
TTTTGCAACATTTATAAAAATCCAAATACCCAACTATCAGGTTGTACTCT
TTGGTAGAAAACAATGAGGACAGTACTATTGCAGATAATTTGGAATTGAT
ACGATACTTACATGTTCCTATAGAAGGACTTAAATGCTTGTTTGAAGCTG
ATAATTCATCCAGATGCATTCAACGAAGCTAACCAGAAAGTTGGCAGACA
TGTTGGAAATATCATCTATTTTATCAGTAAACATCACTTCTCATCAGTGT
TCAGTAGGATTGTTGAGAGCATTCTGAAGAAAGCTCATCATTATCGGATG
AAACAGTGAAAAGACAACTCTTGAATACTCTGTGCAGCAATTTGTTACCC
ATAGAACAACAACCACTTGCAATCCAATCAAACTTGATTGTGGTTACGAC
AATTGAGCATTGCTTTGAAAAGCTTCCCATCAACCGACCATCCAAGAAAT
CTGTTGACAAATCACTTTCAATTGTGAAAAGCAGTTTGGTGGGCCTTGCG
AAACATCAATTTGAACTGGTTGTAACTTCATTAGTACATTACATTAAAGA
TATTCCAACAATTATGTCTTTTTCAAGAGACAAGCCCTCAGAATGGATGC
ATGTCGAGCTGAAAAGGTTCAAAAATCAGAACTTAGTGAAAAGCTTTTTC
AACTGGTGGAAAATTGGTCCGAAAACTCGAAAAAAAGATCAATATCATGG
CCACTGCAAGGATTGCTTCTCCTTCTCTCACCTGTATGTAATGCGGAAAA
CATTTTAAATTTCTAAAGAAATATTCTCAACAAGTTGTCCTGAAAGGCTT
ATGCAAGTCCATATGGAATTGGATTGAAACCTACCCTGAACAGTTTTGCA
ACATTTATAAAAATCCAAATACCCAACTATCAGGTTGTACTCTTTGGTAG
AAAACAATGAGGACAGTACTATTGCAGATAATTTGGAATTGATACGATAC
TTACATGTTCCTATAGAAGGACTTAAATGCTTGTTTGAAGCTGATAATTC
ATCCAGATGCATTCAACGAAGCTAACCAGAAAGTTGGCAGACATGTTGGA
AATATCATCTATTTTATCAGTAAACATCACTTCTCATCAGTGTTCAGTAG
GATTGTTGAGAGCATTCTGAAGAAAGCTCATCATTATCGGATGAAACAGT
GAAAAGACAACTCTTGAATACTCTGTGCAGCAATTTGTTACCCATAGAAC
AACAACCACTTGCAATCCAATCAAACTTGATTGTGGTTACGACAATTGAG
CATTGCTTTGAAAAGCTTCCCATCAACCGACCATCCAAGAAATCTGTTGA
CAAATCACTTTCAATTGTGAAAAGCAGTTTGGTGGGCCTTGCGAAACATC
AATTTGAACTGGTTGTAACTTCATTAGTACATTACATTAAAGATATTCCA
ACAATTATGTCTTTTTCAAGAGACAAGCCCTCAGAATGGATGCATGTCGA
GCTGAAAAGGTTCAAAAATCAGAACTTAGTGAAAAGCTTTTTCAACTGGT
GGAAAATTGGTCCGAAAACTCGAAAAAAAGATCAATATCATGGCCACTGC
AAGGATTGCTTCTCCTTCTCTCACCTGTATGTAATGCGGAAAACATTTTA
AATTTCTAAAGAAATATTCTCAACAAGTTGTCCTGAAAGGCTTATGCAAG
TCCATATGGAATTGGATTGAAACCTACCCTGAACAGTTTTGCAACATTTA
TAAAAATCCAAATACCCAACTATCAGGTTGTACTCTTTGGTAGAAAACAA
TGAGGACAGTACTATTGCAGATAATTTGGAATTGATACGATACTTACATG
TTCCTATAGAAGGACTTAAATGCTTGTTTGAAGCTGATAATTCATCCAGA
TGCATTCAACGAAGCTAACCAGAAAGTTGGCAGACATGTTGGAAATATCA
TCTATTTTATCAGTAAACATCACTTCTCATCAGTGTTCAGTAGGATTGTT
GAGAGCATTCTGAAGAAAGCTCATCATTATCGGATGAAACAGTGAAAAGA
CAACTCTTGAATACTCTGTGCAGCAATTTGTTACCCATAGAACAACAACC
ACTTGCAATCCAATCAAACTTGATTGTGGTTACGACAATTGAGCATTGCT
TTGAAAAGCTTCCCATCAACCGACCATCCAAGAAATCTGTTGACAAATCA
CTTTCAATTGTGAAAAGCAGTTTGGTGGGCCTTGCGAAACATCAATTTGA
ACTGGTTGTAACTTCATTAGTACATTACATTAAAGATATTCCAACAATTA
TGTCTTTTTCAAGAGACAAGCCCTCAGAATGGATGCATGTCGAGCTGAAA
AGGTTCAAAAATCAGAACTTAGTGAAAAGCTTTTTCAACTGGTGGAAAAT
TGGTCCGAAAACTCGAAAAAAAGATCAATATCATGGCCACTGCAAGGATT
GCTTCTCCTTCTCTCACCTGTATGTAATGCGGAAAACATTTTAAATTTCT
AAAGAAATATTCTCAACAAGTTGTCCTGAAAGGCTTATGCAAGTCCATAT
GGAATTGGATTGAAACCTACCCTGAACAGTTTTGCAACATTTATAAAAAT
CCAAATACCCAACTATCAGGTTGTACTCTTTGGTAGAAAACAATGAGGAC
AGTACTATTGCAGATAATTTGGAATTGATACGATACTTACATGTTCCTAT
AGAAGGACTTAAATGCTTGTTTGAAGCTGATAATTCATCCAGATGCATTC
AACGAAGCTAACCAGAAAGTTGGCAGACATGTTGGAAATATCATCTATTT
TATCAGTAAACATCACTTCTCATCAGTGTTCAGTAGGATTGTTGAGAGCA
TTCTGAAGAAAGCTCATCATTATCGGATGAAACAGTGAAAAGACAACTCT
TGAATACTCTGTGCAGCAATTTGTTACCCATAGAACAACAACCACTTGCA
ATCCAATCAAACTTGATTGTGGTTACGACAATTGAGCATTGCTTTGAAAA
GCTTCCCATCAACCGACCATCCAAGAAATCTGTTGACAAATCACTTTCAA
TTGTGAAAAGCAGTTTGGTGGGCCTTGCGAAACATCAATTTGAACTGGTT
GTAACTTCATTAGTACATTACATTAAAGATATTCCAACAATTATGTCTTT
TTCAAGAGACAAGCCCTCAGAATGGATGCATGTCGAGCTGAAAAGGTTCA
AAAATCAGAACTTAGTGAAAAGCTTTTTCAACTGGTGGAAAATTGGTCCG
AAAACTCGAAAAAAAGATCAATATCATGGCCACTGCAAGGATTGCTTCTC
CTTCTCTCACCTGTATGTAATGCGGAAAACATTTTAAATTTCTAAAGAAA
TATTCTCAACAAGTTGTCCTGAAAGGCTTATGCAAGTCCATATGGAATTG
GATTGAAACCTACCCTGAACAGTTTTGCAACATTTATAAAAATCCAAATA
CCCAACTATCAGGTTGTACTCTTTGGTAGAAAACAATGAGGACAGTACTA
TTGCAGATAATTTGGAATTGATACGATACTTACATGTTCCTATAGAAGGA
CTTAAATGCTTGTTTGAAGCTGATAATTCATCCAGATGCATTCAACGAAG
CTAACCAGAAAGTTGGCAGACATGTTGGAAATATCATCTATTTTATCAGT
AAACATCACTTCTCATCAGTGTTCAGTAGGATTGTTGAGAGCATTCTGAA
GAAAGCTCATCATTATCGGATGAAACAGTGAAAAGACAACTCTTGAATAC
TCTGTGCAGCAATTTGTTACCCATAGAACAACAACCACTTGCAATCCAAT
CAAACTTGATTGTGGTTACGACAATTGAGCATTGCTTTGAAAAGCTTCCC
ATCAACCGACCATCCAAGAAATCTGTTGACAAATCACTTTCAATTGTGAA
AAGCAGTTTGGTGGGCCTTGCGAAACATCAATTTGAACTGGTTGTAACTT
CATTAGTACATTACATTAAAGATATTCCAACAATTATGTCTTTTTCAAGA
GACAAGCCCTCAGAATGGATGCATGTCGAGCTGAAAAGGTTCAAAAATCA
GAACTTAGTGAAAAGCTTTTTCAACTGGTGGAAAATTGGTCCGAAAACTC
GAAAAAAAGATCAATATCATGGCCACTGCAAGGATTGCTTCTCCTTCTCT
CACCTGTATGTAATGCGGAAAACATTTTAAATTTCTAAAGAAATATTCTC
AACAAGTTGTCCTGAAAGGCTTATGCAAGTCCATATGGAATTGGATTGAA
ACCTACCCTGAACAGTTTTGCAACATTTATAAAAATCCAAATACCCAACT
ATCAGGTTGTACTCTTTGGTAGAAAACAATGAGGACAGTACTATTGCAGA
TAATTTGGAATTGATACGATACTTACATGTTCCTATAGAAGGACTTAAAT
GCTTGTTTGAAGCTGATAATTCATCCAGATGCATTCAACGAAGCTAACCA
GAAAGTTGGCAGACATGTTGGAAATATCATCTATTTTATCAGTAAACATC
ACTTCTCATCAGTGTTCAGTAGGATTGTTGAGAGCATTCTGAAGAAAGCT
CATCATTATCGGATGAAACAGTGAAAAGACAACTCTTGAATACTCTGTGC
AGCAATTTGTTACCCATAGAACAACAACCACTTGCAATCCAATCAAACTT
GATTGTGGTTACGACAATTGAGCATTGCTTTGAAAAGCTTCCCATCAACC
GACCATCCAAGAAATCTGTTGACAAATCACTTTCAATTGTGAAAAGCAGT
TTGGTGGGCCTTGCGAAACATCAATTTGAACTGGTTGTAACTTCATTAGT
ACATTACATTAAAGATATTCCAACAATTATGTCTTTTTCAAGAGACAAGC
CCTCAGAATGGATGCATGTCGAGCTGAAAAGGTTCAAAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012908XLOC_012908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022976-exon-sc0000437-1575043694:116313..116707TCONS_00022976-exon-sc0000437-1575043694:116313..116707Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:106926..107066TCONS_00022976-exon-sc0000437-1575043694:106926..107066Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:106396..106479TCONS_00022976-exon-sc0000437-1575043694:106396..106479Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:106154..106222TCONS_00022976-exon-sc0000437-1575043694:106154..106222Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:105516..105637TCONS_00022976-exon-sc0000437-1575043694:105516..105637Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:104991..105097TCONS_00022976-exon-sc0000437-1575043694:104991..105097Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:104522..104665TCONS_00022976-exon-sc0000437-1575043694:104522..104665Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1575043694:103331..103440TCONS_00022976-exon-sc0000437-1575043694:103331..103440Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:116313..116707TCONS_00022976-exon-sc0000437-1510915933:116313..116707Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:106926..107066TCONS_00022976-exon-sc0000437-1510915933:106926..107066Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:106396..106479TCONS_00022976-exon-sc0000437-1510915933:106396..106479Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:106154..106222TCONS_00022976-exon-sc0000437-1510915933:106154..106222Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:105516..105637TCONS_00022976-exon-sc0000437-1510915933:105516..105637Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:104991..105097TCONS_00022976-exon-sc0000437-1510915933:104991..105097Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:104522..104665TCONS_00022976-exon-sc0000437-1510915933:104522..104665Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1510915933:103331..103440TCONS_00022976-exon-sc0000437-1510915933:103331..103440Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:116313..116707TCONS_00022976-exon-sc0000437-1491911889:116313..116707Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:106926..107066TCONS_00022976-exon-sc0000437-1491911889:106926..107066Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:106396..106479TCONS_00022976-exon-sc0000437-1491911889:106396..106479Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:106154..106222TCONS_00022976-exon-sc0000437-1491911889:106154..106222Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:105516..105637TCONS_00022976-exon-sc0000437-1491911889:105516..105637Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:104991..105097TCONS_00022976-exon-sc0000437-1491911889:104991..105097Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:104522..104665TCONS_00022976-exon-sc0000437-1491911889:104522..104665Clytia hemisphaericaexon
TCONS_00022976-exon-sc0000437-1491911889:103331..103440TCONS_00022976-exon-sc0000437-1491911889:103331..103440Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022976-proteinTCONS_00022976-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:103331..116707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29897	0.388723	0.338509	0.772749	4.97252	4.99134	4.61247	4.91788	1.23605	2.18444	1.21159	2.79651	1.92208	2.6844	1.59622	2.1862	2.99247	2.30039	1.37718	3.76909	2.79426	2.39689	0.914114	1.8783	2.78192	5.15658	1.20257	1.24394	0.675215	1.01426
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00022976 vs. Swiss-Prot (Human)
Match: NF1 (Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.011e-41
Identity = 83/266 (31.20%), Postives = 151/266 (56.77%), Query Frame = 3 
Query:  348 KPSEWMHVELKRFKNQLPINRPSKKSVDK-SLSIVKSSLVGLAKHQFELVVTSLVHYIKDIPTINLLPIEQQPLAIQSNLIVVTTIEHCFEKHSEESSSLSDETVKRQLLNTLCSLIIHPDAFNEANQKVGRHVGNIIYFISKHHFSSVFSRIVERLYSLVENNEDSTIADNLELIRYLHVPIEGLKCLFEECGKHFKFLKKYSQQVVLKGLCKSIWNWIETYPEQFCNIYKNPNTQLSELSEKLFQLVENWSENSKKRSISWPLQ 1142
            +P EW+   + RF  QLPI    + +  K S    K  L+ ++K++F LV++ L   +K++  + +     +     S LI++ T+E C     +++  L +  + +QLL  +C  +      N+   ++      +++ +S ++F++VFSRI  RL  L   +ED+    ++EL++Y++V    LK L +E    FK LKK +Q  V+  L K+ WNW+E YP++F  +Y+ P T ++E +EKLF LV+ ++E++K+++  WPLQ
Sbjct:    5 RPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSTEHNKECLINISKYKFSLVISGLTTILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKCLAGQPKDTMRLDETMLVKQLLPEICHFLHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELLQYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQ 270
The following BLAST results are available for this feature:
BLAST of TCONS_00022976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NF11.011e-4131.20Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2[more]
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