TCONS_00022988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022988
Unique NameTCONS_00022988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022988 ID=TCONS_00022988|Name=TCONS_00022988|organism=Clytia hemisphaerica|type=transcript|length=794bp
aaaaacgtgtatccttTTTCGGTGAAGAGCTGATATGTTTGTAGAACCGT
GTTTTTGTTTATAGGATAATAAAGAGATTTAAGAGAAGGAAAAGGAGAGG
AAATTCATAGTTCAGAACGTTCAAACGACAACCTGACTCGGGATCGACTT
TCGCATGAAATGGGATGAGCCTACAAGAcgacagttgacgctctctaatt
cgattttcaaggggaattggatcttcattgaataagggagcgtatcgaat
ggtAGAGCGTTTTTTATGAGAgttttcttgttgacggtgactttcaatat
tatcgaataacggagcgtatcgaatataatagtagaatgtcgaatttgag
agcatcaactgtaactcaggatatatatttttctgaatcaaaagtaaatt
tttaaatattttacaataggAAGTTTAGATTATTTTATACACATTTACGT
CATAATTTTAGGTAGTTTTAATATATAGATAGTCTGAAATAGTGtgataa
ttttttatacaactgtagtttgaaaaaaatgttttatttgtaCATAGTTA
TACTAAGATatatttactttcactttcgttttacCTTTATTTATATCTCT
AATATTTCTCATTCTTTGAAGAGAAGTATAGATGGTAATCTATAATAACT
ACTTGTTGTGAGGTACTCCATGTTTTCTCGGCTCTCGGCTAACACTCATT
TTCTAATTTGTAAATGCCATTGTAACTCATGTTTGTAAATTAATGAAttt
agtttgtttattttgtccTTTTGattattaaagaaaaaataaaa
Run BLAST on NCBI

transcript from alignment at sc0000437:117355..118148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022988 ID=TCONS_00022988|Name=TCONS_00022988|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at sc0000437:117355..118148 (Clytia hemisphaerica)
ttttattttttctttaataatCAAAAggacaaaataaacaaactaaaTTC
ATTAATTTACAAACATGAGTTACAATGGCATTTACAAATTAGAAAATGAG
TGTTAGCCGAGAGCCGAGAAAACATGGAGTACCTCACAACAAGTAGTTAT
TATAGATTACCATCTATACTTCTCTTCAAAGAATGAGAAATATTAGAGAT
ATAAATAAAGgtaaaacgaaagtgaaagtaaatatATCTTAGTATAACTA
TGtacaaataaaacatttttttcaaactacagttgtataaaaaattatca
CACTATTTCAGACTATCTATATATTAAAACTACCTAAAATTATGACGTAA
ATGTGTATAAAATAATCTAAACTTcctattgtaaaatatttaaaaattta
cttttgattcagaaaaatatatatcctgagttacagttgatgctctcaaa
ttcgacattctactattatattcgatacgctccgttattcgataatattg
aaagtcaccgtcaacaagaaaacTCTCATAAAAAACGCTCTaccattcga
tacgctcccttattcaatgaagatccaattccccttgaaaatcgaattag
agagcgtcaactgtcgTCTTGTAGGCTCATCCCATTTCATGCGAAAGTCG
ATCCCGAGTCAGGTTGTCGTTTGAACGTTCTGAACTATGAATTTCCTCTC
CTTTTCCTTCTCTTAAATCTCTTTATTATCCTATAAACAAAAACACGGTT
CTACAAACATATCAGCTCTTCACCGAAAaaggatacacgttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012915XLOC_012915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022988-exon-sc0000437-1491911889:117355..118148TCONS_00022988-exon-sc0000437-1491911889:117355..118148Clytia hemisphaericaexon
TCONS_00022988-exon-sc0000437-1510915933:117355..118148TCONS_00022988-exon-sc0000437-1510915933:117355..118148Clytia hemisphaericaexon
TCONS_00022988-exon-sc0000437-1575043694:117355..118148TCONS_00022988-exon-sc0000437-1575043694:117355..118148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:117355..118148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194463	0	0.860054	1.40815	14.1556	11.9729	7.5623	6.56505	3.64087	2.61321	3.96167	1.74866	1.43613	0.672546	0.758491	0.651416	0.228038	0.118558	0.163882	0.704793	0.757771	0.967322	0.535595	0.823709	1.92072	2.9692	0.592919	0.506334	1.19578	0.870489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top