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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022992 ID=TCONS_00022992|Name=TCONS_00022992|organism=Clytia hemisphaerica|type=transcript|length=1645bp
ttttgaaaaactgaaaGAAGGTCAAGAAAGGTTACTTTTCAATTACATTA
GTGGCCATGATTGTGTTGGTGTGCTCCCTACTAATTatggaaaatctttg
attttccaTCTTGTTCCTGCTGTCTTCAAATACTTTCATCCACAGGAAGA
AGCTCCTATTTTGATTGTAATTTTCCCAATTACTGCTTTGGTTGAAGACC
AAATTAAAAGGTGTACAGAGCTAGGTGTAAAGGCTATTTATCTGACCAAG
GGAAATATCGGAGAAGCTGCATGTGGAAATTTTGACTTATTGTGTTCAAG
TCCAGAATCCTTGCTCGAGGAGAGATGCCGTGAAACTCTCCTCGCTCTTT
CTCCAAGAGTAGTTGGAGTTGTTATCGATGAAGTTCATGTTGTCGTTAAA
TGGGGCCTGTCTTCCACCCAGAAAAGCGCATTTCGAAGTTGGAAATTTGA
GAGCGTTCTTCAACAAACCATTCTTGTGCCTGACTGCCAACGCAAACAgc
aaaacaacaagaaaaattgTAAAGTTGGTCAAACTCAGGAATTACAAGGT
TGAAAGATTCTCTCCTGAGAACCAAATGTAAAGATTCACgtgcaaaaatt
gaaaacaactTCAGACTTTTCTGAGGTCATGGTGTACATGAGACCTATTC
TTTCTGAATTTGATTTGAATGGCCAATGTGAAAAAACCATCATATACTGT
CATAATATTGGTCGCTGTGGTAAGCTCTTCTTGTTGTTCGATCCAAAGTA
TCGTGGTAAAACTGTCCGGGTGTTTCATGGAAAGACTCTACCCCACCACA
GGGCAGAGATCATGGAGGAGTTCATCAAACCATAAGGTGGTGAATGTTTT
ATTATTATTGCAACAGCTGCTCTGGGGATGGGGGTTAACATAAAGAACAT
CAGGCATGTTATTCATGTAGGGTTGCCAAAGGACGTTGAAGGATACATAC
AAGAGATTGGTAGAGCTGACAGAGATGGTAAACAGAGCTCGGCAATGTTA
TTTTATCGTCCTGCTTGTGACATTTCTCACTGCAAAGATGATGATTTGGT
TAGggtaataaaaaacaaagaagatGTTTGCAGAAGATTTGCCCTTTTGA
AATGTTTCAACGTTGTGCCAGATAATTCACTAGAAAAACATGAATGTTGT
GACATTTGTGATAAATTATGTGTTTGTGAAACGTGCTCAGTAACAGTAGC
TTTTGAACAAGTTACCAATGAACTACCTGAACCTTTACCAATTATAAGAT
CAACcagtgaaaaagaaaagaaagtggTGTTGGAGTGTCTAAAACAACTT
AGATTGAGTAAAGCGGGTGAAAAGCTGGTGATGGAGAATGTCGATTGTAT
CAAAACAGAAGGAGATGTAATAAGTTTGGGTATTGAAGAATCTGTCATTG
TCTTTGTTAGGAGGATCTTTGAAGAAGTTTTTGATTGGGAAAACATAATA
GACAATAAAAATGATGACAATGATGACGATAATGCTAAATCAACAGAGAT
TGGAACTGAAGACAAGACAGATTTTTGTGATAATGCTCAATTGGCAGAGG
CTAGTGACTCTGATTTACTATCCTTGAATCAGCCATACGAGAAAgccaaa
gaaaattatttttatttcgattcgGATAATGACTTCTGGCAAGAC Run BLAST on NCBI protein sequence of TCONS_00022992-protein >TCONS_00022992-protein ID=TCONS_00022992-protein|Name=TCONS_00022992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MGVNIKNIRHVIHVGLPKDVEGYIQEIGRADRDGKQSSAMLFYRPACDIS
HCKDDDLVRVIKNKEDVCRRFALLKCFNVVPDNSLEKHECCDICDKLCVC
ETCSVTVAFEQVTNELPEPLPIIRSTSEKEKKVVLECLKQLRLSKAGEKL
VMENVDCIKTEGDVISLGIEESVIVFVRRIFEEVFDWENIIDNKNDDNDD
DNAKSTEIGTEDKTDFCDNAQLAEASDSDLLSLNQPYEKAKENYFYFDSD
NDFWQD Run BLAST on NCBI transcript from alignment at sc0000438:159320..163585+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022992 ID=TCONS_00022992|Name=TCONS_00022992|organism=Clytia hemisphaerica|type=transcript|length=4266bp|location=Sequence derived from alignment at sc0000438:159320..163585+ (Clytia hemisphaerica)
ttttgaaaaactgaaaGAAGGTCAAGAAAGGTTACTTTTCAATTACATTA
GTGGCCATGATTGTGTTGGTGTGCTCCCTACTAATTatggaaaatctttg
attttccaTCTTGTTCCTGCTGTCTTCAAATACTTTCATCCACAGGAAGA
AGCTCCTATTTTGATTGTAATTTTCCCAATTACTGCTTTGGTTGAAGACC
AAATTAAAAGGTGTACAGAGCTAGGTGTAAAGGCTATTTATCTGACCAAG
GGAAATATCGGAGAAGCTGCATGTGGAAATTTTGACTTATTGTGTTCAAG
TCCAGAATCCTTGCTCGAGGAGAGATGCCGTGAAACTCTCCTCGCTCTTT
CTCCAAGAGTAGTTGGAGTTGTTATCGATGAAGTTCATGTTGTCGTTAAA
TGGCGAGACCTTTATTATGCAGAAAGTTTCAAATATATTACTGAACAGAC
CTTTTATCAATAAAGCAAAGGATGACGTATTTTGAATCGACTGATTAGTC
CAATtatagaaaaataatgaaacagccatgcataattactacATTGTGCA
TGTGTTAATATTCAAATATGTATATATGGCTGTGTCATTGTTTTTCTATA
ATTGGACTAATCAGTTTATTCAAAATAACGTCATCCTTCTTGCTGTTGAT
AAAATCATATCATACCGTGTTCTGAGATAAATATGAAAACTTTTGATCCC
AAAGTAAATTTTTTGGAACACATCAAATTTCATTGCTTTTCATTTCCATT
GCCCCCGAAAGTATCTAAGAATTCCTGTTGTTTGGAAATGATAAAAATTG
taacactttttataaaacaaaaatacaagCATGTGACATacattttaatc
aaaagatcACCATTCAATGAATGATATCAGCCATTATTTATGATTTAAAG
CTATTCAAGGTAAAGTTTGTATGATAAATAAATATACAGtacacaaaaaa
atacaaaatctataaataaaacttgataaaaaaatacaaacaataGAATG
CAATTTGGATAATAAGTTAGTAAAACAGTCTATAACAAAAGtatataaac
aaacaaacagtatAACATATTTTTGTACAATGCCATACCGGCAGAGAAAA
ATTATAGGAAATATAAACATCTGGGGAGAAGCAAGCAACTTTATGATTGG
CTTTCAGGTAAAAATGTAGGTGCCATAATTAAAACATAGGTGACAACAAC
ATTACAACGTCTCACGATAGTTACTATTTTGAGGGAAAACAAACTATCAG
GACACTATCAGGACTTTACTGAAGCATTTAAAGCATTATCAAAAAATCTA
TTCCTTGCCCNCCCGCCATAATGGGCGATCCATTGCAATAACAGTCCAAT
CGAGTAAATCGATTTTCTTTAAGAGTTGTTTACAGTTGTCTTTGTATCTC
AATTTTGGTTGTCCAATAGAACGTGAACCATGTTCAAGCTCtccaaacaa
aatcatttttgctgCTCTAACATTTTGCATTCTCCCAATGTGACCAAGCC
ATCTCAAACGACTTTTTGGATAATTTGGATAAAAAGTTAGTAAAACAGTC
Tatgttagcctggatatccaagctcaaaagttttacctcagccagacaaa
gttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccagcagtgataaatcaatttagaatggcagccttgaccataaa
atatagacagtgtggtggaaagtctgtttagacaaaaagtgcaaagtgaa
ttttgaagaaatttttttttttcaaaatccaacccaaaacagcaatacaa
aattggcaaacagaaaagaagaattgaagcaaaataaagatatacctttt
cAGTTCTTTccacgatgcaaccaagtcattataaagattaaaacataaat
atctaagcaagtgaaattgaaaagaaaacaaccagaacatctaaaaattc
ccatgttttgatcttcccgcttcttccctaccattattgttatttttatt
tggatgcgtggtcaaacacccaagggagacaattagatattctattgtta
tttgcttcgaagaagaaaagtcagggagatatgcaaagcagcgtatgcgc
cttgctgatcgtccgcgcggtccacctaaatatttaggcgaacacttcaa
gtcggctcgcataatttcttatacgcgcgcCACCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcctcagatgagaatgcagacgatctaggtaaaccagaccgtaaaca
taagaaatatcaaaatcaaaaaaaagtttacgggctggatatccaggcta
agtcTATGTCTATAACAAAAGtatataaacaaacaaacagtatAACATAT
TTTTGTAGAATGCCATACCGGCAGAGAAAAATTATAGGAAATATAAACAT
CCGGGGAGAAGCAAGCAACTTTATGATTGGCTTTCAGGTAAAAATGTAGG
TGCCAGAATTAAAACAGAGGTGACAACAACATTACAACGTCGCACGATAG
TTACTATTTTGAGGGAGAACAAACTATCAGGACTTTACTGAAGCATTAAA
GCATTATCAAAAATTGTATTCCTTGCCCTGACTAACTAACTTGGAACAGC
AGAACATGGATTCGATTATGAGCAGAGTTGAAATGAATATTGagatttgt
ttattttattctaCCAATTTCAGGGGCCTGTCTTCCACCCAGAAAAGCGC
ATTTCGAAGTTGGAAATTTGAGAGCGTTCTTCAACAAACCATTCTTGTGC
CTGACTGCCAACGCAAACAgcaaaacaacaagaaaaattgTAAAGTTGGT
CAAACTCAGGAATTACAAGGTTGAAAGATTCTCTCCTGAGAACCAAATGT
AAAGATTCACgtgcaaaaattgaaaacaactTCAGACTTTTCTGAGGTCA
TGGTGTACATGAGACCTATTCTTTCTGAATTTGATTTGAATGGCCAATGT
GAAAAAACCATCATATACTGTCATAATATTGGTCGCTGTGGTAAGCTCTT
CTTGTTGTTCGATCCAAAGTATCGTGGTAAAACTGTCCGGGTGTTTCATG
GAAAGACTCTACCCCACCACAGGGCAGAGATCATGGAGGAGTTCATCAAA
CCATAAGGTGGTGAATGTTTTATTATTATTGCAACAGCTGCTCTGGGGAT
GGGGGTTAACATAAAGAACATCAGGCATGTTATTCATGTAGGGTTGCCAA
AGGACGTTGAAGGATACATACAAGAGATTGGTAGAGCTGACAGAGATGGT
AAACAGAGCTCGGCAATGTTATTTTATCGTCCTGCTTGTGACATTTCTCA
CTGCAAAGATGATGATTTGGTTAGggtaataaaaaacaaagaagatGTTT
GCAGAAGATTTGCCCTTTTGAAATGTTTCAACGTTGTGCCAGATAATTCA
CTAGAAAAACATGAATGTTGTGACATTTGTGATAAATTATGTGTTTGTGA
AACGTGCTCAGTAACAGTAGCTTTTGAACAAGTTACCAATGAACTACCTG
AACCTTTACCAATTATAAGATCAACcagtgaaaaagaaaagaaagtggTG
TTGGAGTGTCTAAAACAACTTAGATTGAGTAAAGCGGGTGAAAAGCTGGT
GATGGAGAATGTCGATTGTATCAAAACAGAAGGAGATGTAATAAGTTTGG
GTATTGAAGAATCTGTCATTGTCTTTGTTAGGAGGATCTTTGAAGAAGTT
TTTGATTGGGAAAACATAATAGACAATAAAAATGATGACAATGATGACGA
TAATGCTAAATCAACAGAGATTGGAACTGAAGACAAGACAGATTTTTGTG
ATAATGCTCAATTGGCAGAGGCTAGTGACTCTGATTTACTATCCTTGAAT
CAGCCATACGAGAAAgccaaagaaaattatttttatttcgattcgGATAA
TGACTTCTGGCAAGAC Coding sequence (CDS) from alignment at sc0000438:159320..163585+ >TCONS_00022992 ID=TCONS_00022992|Name=TCONS_00022992|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000438:159320..163585+ (Clytia hemisphaerica)
ATGGGGGTTAACATAAAGAACATCAGGCATGTTATTCATGTAGGGTTGCC
AAAGGACGTTGAAGGATACATACAAGAGATTGGTAGAGCTGACAGAGATG
GTAAACAGAGCTCGGCAATGTTATTTTATCGTCCTGCTTGTGACATTTCT
CACTGCAAAGATGATGATTTGGTTAGggtaataaaaaacaaagaagatGT
TTGCAGAAGATTTGCCCTTTTGAAATGTTTCAACGTTGTGCCAGATAATT
CACTAGAAAAACATGAATGTTGTGACATTTGTGATAAATTATGTGTTTGT
GAAACGTGCTCAGTAACAGTAGCTTTTGAACAAGTTACCAATGAACTACC
TGAACCTTTACCAATTATAAGATCAACcagtgaaaaagaaaagaaagtgg
TGTTGGAGTGTCTAAAACAACTTAGATTGAGTAAAGCGGGTGAAAAGCTG
GTGATGGAGAATGTCGATTGTATCAAAACAGAAGGAGATGTAATAAGTTT
GGGTATTGAAGAATCTGTCATTGTCTTTGTTAGGAGGATCTTTGAAGAAG
TTTTTGATTGGGAAAACATAATAGACAATAAAAATGATGACAATGATGAC
GATAATGCTAAATCAACAGAGATTGGAACTGAAGACAAGACAGATTTTTG
TGATAATGCTCAATTGGCAGAGGCTAGTGACTCTGATTTACTATCCTTGA
ATCAGCCATACGAGAAAgccaaagaaaattatttttatttcgattcgGAT
AATGACTTCTGGCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022992-exon-sc0000438-1491911889:159320..159721 | TCONS_00022992-exon-sc0000438-1491911889:159320..159721 | Clytia hemisphaerica | exon |
| TCONS_00022992-exon-sc0000438-1510915933:159320..159721 | TCONS_00022992-exon-sc0000438-1510915933:159320..159721 | Clytia hemisphaerica | exon |
| TCONS_00022992-exon-sc0000438-1575043694:159320..159721 | TCONS_00022992-exon-sc0000438-1575043694:159320..159721 | Clytia hemisphaerica | exon |
| TCONS_00022992-exon-sc0000438-1491911889:162343..163585 | TCONS_00022992-exon-sc0000438-1491911889:162343..163585 | Clytia hemisphaerica | exon |
| TCONS_00022992-exon-sc0000438-1510915933:162343..163585 | TCONS_00022992-exon-sc0000438-1510915933:162343..163585 | Clytia hemisphaerica | exon |
| TCONS_00022992-exon-sc0000438-1575043694:162343..163585 | TCONS_00022992-exon-sc0000438-1575043694:162343..163585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000438 | supercontig | sc0000438:159320..163585 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022992 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 7.689e-17 Identity = 54/155 (34.84%), Postives = 77/155 (49.68%), Query Frame = 2
Query: 572 PNVKIHVQKLKTTSDFSEVMVYMRPILSEFDLNGQCEKTIIYCHN-------IGRCGKLFLLFDPKYRGKTVRVFHGKTLPHHRAEIMEEFIKP*GGECFIIIATAALGMGVNIKNIRHVIHVGLPKDVEGYIQEIGRADRDGKQSSAMLFYRPA 1015
PN+ + V++ KT + ++ ++ S ++ G TIIYC + G KL L + +H R +I F++ E +IAT A GMG+N +IR VIH G PKD+E Y QEIGRA RDG QSS + + PA
Sbjct: 733 PNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEG---PTIIYCPSRKMTQQVTGELRKLNL---------SCGTYHAGMSFSTRKDIHHRFVR---DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPA 871 HSP 2 Score: 25.7942 bits (55), Expect = 7.689e-17 Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 3
Query: 420 RKAHFEVGNLR-AFFNKPFLCLTANANSKTTRKIVKLVKLRNYKV 551
R + ++G+L+ A P + LTA A+S IV+ + LRN ++
Sbjct: 681 RDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQI 725
The following BLAST results are available for this feature:
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