TCONS_00022995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022995
Unique NameTCONS_00022995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022995 ID=TCONS_00022995|Name=TCONS_00022995|organism=Clytia hemisphaerica|type=transcript|length=414bp
GAGAAATTAGTTTTTCATCAACAGAGTCTAAATTAAAACCTCAAATTTAT
GAGGCTGTAAGGAAATATAATCTCCTTAGTGCTATCTGCTGGAGACTATA
GTTTAGCCAACGCTAAATCTCGTGTGTGGTGATGAAACGATGAAcgtgaa
aaaaatcaataagtaCAAGAAGTTGTCTTTAGTGTTTTGCAGTTTCAGTG
TTTACATGGATGCTGTATAATATCATCAATCCTTAAAGTTACCTGAGAGT
CAAAGGGAAGGGTGAGAAATAAGAAGTACAAGGAACAATTTTGTGGCCAA
GTTCATTGAGGTAATCTATATAatttattttctacttttcgTGTTCAAAT
CACCTCAAATTTGTTAGAAATCTAAGGGCCTGTTTACATGGATTTTCGGT
ACGGCCTGAGATCC
Run BLAST on NCBI

transcript from alignment at sc0000438:787..3396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022995 ID=TCONS_00022995|Name=TCONS_00022995|organism=Clytia hemisphaerica|type=transcript|length=2610bp|location=Sequence derived from alignment at sc0000438:787..3396- (Clytia hemisphaerica)
GAGAAATTAGTTTTTCATCAACAGAGTCTAAATTAAAACCTCAAATTTAT
GAGGCTGTAAGGAAATATAATCTCCTTAGTGCTATCTGCTGGAGACTATA
GTTTAGCCAACGCTAAATCTCGTGTGTGGTGATGAAACGATGAACGTGAA
AAAAATCAATAAGTACAAGAAGTTGTCTTTAGTGTTTTGCAGTTTCAGTG
TTTACATGGATGCTGTATAATATCATCAATCCTTAAAGTTACCTGAGAGT
CAAAGGTAAGCAAGGCGTTGCTTTATATAATTAAAATTTCCAGGTGCCAC
TGAATCAATCAATTACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTCGGCCGCCCGTATGTCATAAAAGCAACCGCCTGAAAATTTCATT
ATTTCAAAAAAATTCATCATTATGGCCGCAGTCACAAATAACTTGTGTTC
ACGTCATTTCCAGCCCTAAAAAGTGAGTCATCGGTTGGTCGGCACTAAAA
TCGTCGGAAAAATAAGGTCTGAAACCTAGGCTTTGTCATAGAGTTACTTT
ATTCATTAAAACCTTACACCAACCAGAACCTCAGCAATTGTATGAAAAGT
GAATTTTCACTGTGTTTATATACTGCGAGCGATGTAAATTTCCTGTTTTC
GTACTATAATCCGATAAAGCTAACCACAGAGTCCTGATATTGCCCAATTT
TTTGTTCTGTGGATTTTTGTAAACAACAATTGGGCCATTTTAGATTTGGT
CCACAAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTTTATATACTGCGAGCGATGTAAA
TTTCCTGTTTTCGTACTATAATCCGATAAAGCTAACCACAGAGTCCTGAT
ATTGCCCAATTTTTTGTTCTGTGGATTTTTGTAAACAACAATTGGGCCAT
TTTAGATTTGGTCCACAAATGCTAGAGGTAATTAGTCAAACAATTTGATT
ATCAAATTAAACCAACCTAATTGAGCGATTTGAATTTAATTAATCAAACG
CAATTCAAAACACCAGTGCACTGGCAACTGGCGGCGCAGTGAATTTTTGG
AAGATTGTGTCTTGAAGCTGCTTGAAAACAGATTGGTGTAATATGGTAAA
GGGCTTTTAGTTAAAATTTGCAATATAGATTTTTTTTATTTATCTATCCA
GGGAAGGGTGAGAAATAAGAAGTACAAGGAACAATTTTGTGGCCAAGTTC
ATTGAGGTAATCTATATAATTTATTTTCTACTTTTCGTGTTCAAATCACC
TCAAATTTGTTAGAAATCTAAGGGCCTGTTTACATGGATTTTCGGTACGG
CCTGAGATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012921XLOC_012921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022995-exon-sc0000438-1575043694:3142..3396TCONS_00022995-exon-sc0000438-1575043694:3142..3396Clytia hemisphaericaexon
TCONS_00022995-exon-sc0000438-1575043694:787..945TCONS_00022995-exon-sc0000438-1575043694:787..945Clytia hemisphaericaexon
TCONS_00022995-exon-sc0000438-1510915933:3142..3396TCONS_00022995-exon-sc0000438-1510915933:3142..3396Clytia hemisphaericaexon
TCONS_00022995-exon-sc0000438-1510915933:787..945TCONS_00022995-exon-sc0000438-1510915933:787..945Clytia hemisphaericaexon
TCONS_00022995-exon-sc0000438-1491911889:3142..3396TCONS_00022995-exon-sc0000438-1491911889:3142..3396Clytia hemisphaericaexon
TCONS_00022995-exon-sc0000438-1491911889:787..945TCONS_00022995-exon-sc0000438-1491911889:787..945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:787..3396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.786518	1.11342	0.703736	0.710461	11.5875	10.5083	7.95447	7.91542	11.8467	8.37679	10.9686	8.43785	9.33141	6.66831	9.14153	5.17237	11.0614	9.88212	9.2995	14.2817	13.7095	12.5348	7.05009	8.70547	0.929046	0.331661	16.9176	14.1168	12.1849	14.0806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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