TCONS_00022998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022998
Unique NameTCONS_00022998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022998 ID=TCONS_00022998|Name=TCONS_00022998|organism=Clytia hemisphaerica|type=transcript|length=679bp
CTCAAAGtcttttgaccataaaaaaatAGCTGGACCTAATTCCCTTACtt
cctctcaaaaaagtttctaaatacattttcttctttcgaatgagcaaaaa
aaaattccactcCAGAAATTGTTGTCACAGGTCCTAAAGAATGGCCCCCT
ACTAGtaaaaattctattttgaaATAGATACTtacaatgtttttcttttt
ataggcataacacttataagcatatccagaggctcaaattttggaaaaac
ctaATCATTGTCTAAGCATATGCTGAGCCTCAAATTCATCTTTCGCTTAC
CAGACCTCTTATATTGAACGCGGTCTCGTATTTTTACGTGTAAAATATGA
AATACGGCATATATTGCTTCTctcttagccaatcagattgcttatatttt
tcaagttgacgaaaaaggaaaataatttaatatcttttaaacagaattat
atatttttcactACTTTCAGTCTGCtctcaaaatgttcaaaaataaagat
gCAATCGGTGATGCTGGAACCTATCTACCCAATGCGCTAAAGACTGGAAA
CAAGAACGCACTAAGAAAAGTAGAGGACAAATTCCAAGAAGTCAAGGAGT
TCTTTGACATCGAAACTAAGGCTTTATTGGTTTCTGGATTTCTTGAACAA
GAAGGTATTTAAAACAAACTTGACAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000438:165387..166065-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022998 ID=TCONS_00022998|Name=TCONS_00022998|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0000438:165387..166065- (Clytia hemisphaerica)
CTCAAAGTCTTTTGACCATAAAAAAATAGCTGGACCTAATTCCCTTACTT
CCTCTCAAAAAAGTTTCTAAATACATTTTCTTCTTTCGAATGAGCAAAAA
AAAATTCCACTCCAGAAATTGTTGTCACAGGTCCTAAAGAATGGCCCCCT
ACTAGTAAAAATTCTATTTTGAAATAGATACTTACAATGTTTTTCTTTTT
ATAGGCATAACACTTATAAGCATATCCAGAGGCTCAAATTTTGGAAAAAC
CTAATCATTGTCTAAGCATATGCTGAGCCTCAAATTCATCTTTCGCTTAC
CAGACCTCTTATATTGAACGCGGTCTCGTATTTTTACGTGTAAAATATGA
AATACGGCATATATTGCTTCTCTCTTAGCCAATCAGATTGCTTATATTTT
TCAAGTTGACGAAAAAGGAAAATAATTTAATATCTTTTAAACAGAATTAT
ATATTTTTCACTACTTTCAGTCTGCTCTCAAAATGTTCAAAAATAAAGAT
GCAATCGGTGATGCTGGAACCTATCTACCCAATGCGCTAAAGACTGGAAA
CAAGAACGCACTAAGAAAAGTAGAGGACAAATTCCAAGAAGTCAAGGAGT
TCTTTGACATCGAAACTAAGGCTTTATTGGTTTCTGGATTTCTTGAACAA
GAAGGTATTTAAAACAAACTTGACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012923XLOC_012923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022998-exon-sc0000438-1575043694:165387..166065TCONS_00022998-exon-sc0000438-1575043694:165387..166065Clytia hemisphaericaexon
TCONS_00022998-exon-sc0000438-1510915933:165387..166065TCONS_00022998-exon-sc0000438-1510915933:165387..166065Clytia hemisphaericaexon
TCONS_00022998-exon-sc0000438-1491911889:165387..166065TCONS_00022998-exon-sc0000438-1491911889:165387..166065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:165387..166065 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226454	0.0736093	0	0	1.75227	1.28587	1.04262	0.726836	0.318658	0.104391	0.0893129	0.0502723	0.145803	0.469221	0.0857253	0.164299	0.339996	0.425044	0	0.155962	0.323333	0.213591	0.259647	0.0786857	0.486267	0.433981	0.259258	0.28216	0.502692	0.226192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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