TCONS_00023012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023012
Unique NameTCONS_00023012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023012 ID=TCONS_00023012|Name=TCONS_00023012|organism=Clytia hemisphaerica|type=transcript|length=323bp
TTAAAGTATTCATCCGAtcaaaaaagctttcaaataaaagatcTGGGTTA
TACGAGTCAGGATGCAAGATGTCATTCCAATCAATTTTATAAAAgtcttc
tttgaatttcttgCTATCAAAGCTTTTCCATCTTCGATAGTATTTTGTTT
CTTTGGAGAAATTTGTAgagaagttttcaaaaataagaaattgaGGCAAA
TGATCAGATATACCAACTAAAAGATTTCCGGTCAGAGGTTTAAGTTTCGC
AGGAGTGAATAAAATATTATCTATGAGTGTCCTTGACCTATCAGTGATTC
TGGTAGGTAGAAAAATACTAGGT
Run BLAST on NCBI

protein sequence of TCONS_00023012-protein

>TCONS_00023012-protein ID=TCONS_00023012-protein|Name=TCONS_00023012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
PSIFLPTRITDRSRTLIDNILFTPAKLKPLTGNLLVGISDHLPQFLIFEN
FSTNFSKETKYYRRWKSFDSKKFKEDFYKIDWNDILHPDSYNPDLLFESF
FDRMNTL
Run BLAST on NCBI

transcript from alignment at sc0000438:115938..116260

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023012 ID=TCONS_00023012|Name=TCONS_00023012|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0000438:115938..116260 (Clytia hemisphaerica)
ACCTAGTATTTTTCTACCTACCAGAATCACTGATAGGTCAAGGACACTCA
TAGATAATATTTTATTCACTCCTGCGAAACTTAAACCTCTGACCGGAAAT
CTTTTAGTTGGTATATCTGATCATTTGCCtcaatttcttatttttgaaaa
cttctcTACAAATTTCTCCAAAGAAACAAAATACTATCGAAGATGGAAAA
GCTTTGATAGcaagaaattcaaagaagacTTTTATAAAATTGATTGGAAT
GACATCTTGCATCCTGACTCGTATAACCCAgatcttttatttgaaagctt
ttttgaTCGGATGAATACTTTAA

Coding sequence (CDS) from alignment at sc0000438:115938..116260

>TCONS_00023012 ID=TCONS_00023012|Name=TCONS_00023012|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000438:115938..116260 (Clytia hemisphaerica)
CCTAGTATTTTTCTACCTACCAGAATCACTGATAGGTCAAGGACACTCAT
AGATAATATTTTATTCACTCCTGCGAAACTTAAACCTCTGACCGGAAATC
TTTTAGTTGGTATATCTGATCATTTGCCtcaatttcttatttttgaaaac
ttctcTACAAATTTCTCCAAAGAAACAAAATACTATCGAAGATGGAAAAG
CTTTGATAGcaagaaattcaaagaagacTTTTATAAAATTGATTGGAATG
ACATCTTGCATCCTGACTCGTATAACCCAgatcttttatttgaaagcttt
tttgaTCGGATGAATACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012937XLOC_012937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023012-proteinTCONS_00023012-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023012-exon-sc0000438-1491911889:115938..116260TCONS_00023012-exon-sc0000438-1491911889:115938..116260Clytia hemisphaericaexon
TCONS_00023012-exon-sc0000438-1510915933:115938..116260TCONS_00023012-exon-sc0000438-1510915933:115938..116260Clytia hemisphaericaexon
TCONS_00023012-exon-sc0000438-1575043694:115938..116260TCONS_00023012-exon-sc0000438-1575043694:115938..116260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:115938..116260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.303452	3.17103	0.344707	0.419647	0	0.800149	0.74909	0.524456	0.324811	0	0.207246	0	0.644784	0.3534	0.94813	0	0	0	0	0.902608	0.880521	0.356796	0	0.334103	0	0.426693	0	0.690777	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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