TCONS_00023038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023038
Unique NameTCONS_00023038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023038 ID=TCONS_00023038|Name=TCONS_00023038|organism=Clytia hemisphaerica|type=transcript|length=1614bp
tagtGATCGTTATGCACGCCTTGATAGACCTCCACCCAGAGGTGGCTTTC
GTGGTAGAGGCCGTGGGCGTGGGGATTATGGTGGCCGTGGTGGTTATGGT
GGCCGAGGGGGTTATGGTGGCCGAGGAGACTATGGTGGCCGAGGAGACTA
TGGTGGCCGAGGTGGAGGAAGAGGAAGAGGTGACTACGGCCGTGACACCT
ACCAGAGGGATCCTTACGCCAGAGACCCGTATCTTCCGAGGGACCCTTAT
GCAAGAGATCCATACCCGAGAGACCAACACAGAGATTCTTATGGAAGGGA
CCCTTACTCAAAAAGTGGATACAGGGAACGCAGCCCGCCAAGAACATATG
ATTATTCAAGAGCACCTGCATCTGACCCATATGCTGCTGAAAGAAGACGT
TTAGCTTACGGGGACTCCACCCCTTCTAGTAGCTCCGCTCCGTATGCTAC
TCAAAGTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCCAACGAAGTG
ACCCCTATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAGAGAGGTGAT
CCCTATGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAGAAGTGACCC
CTATTCAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGACTGACCCTT
ATGCTACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCTGCGCCGTAC
GCCACACAAAGTCAAGCATCGACTGCAACTTACGCTACGCAAAGTTACGC
TGCCACTCCATCTTATGCTACACCTGCACGTACCGCATCCTATTCCTCTT
ATCCAGCTCAGACCCAATCAAGCTCCGCATATGCAACTCAAAGTTATGCA
AGCTCCTCATATGCCACTCAAAGTTATGCAAGCTCTTCATATGCAACTCA
AAGTTATGCAAGCTCTTATCCTGCTCAAAGTCAATCGAGTGCCGCGCCTT
ACGCCACTCAAAGCCAAAACGGTGGAGCTCGTTATGCAACTCAAAGTTAT
GCTCAATATGCAGCAGACTCACCGACAAAGAGTTTGCCTTATCAGCAATC
CACTAGTGTTTCTTCTGCTTCCTATGGCACCTCAGCTTCAGCATACAGTG
CACAACCTGCGGCTGCTACTCCTGGCTCTGCATCAGCTGGCTACAGTTAC
AGTTACCGCTAGATACCAGGTCGAATGCGTGATTCAAATCCAAGCTCTTA
CGAAGGAAAATCGAGTCGTGTCGAGTCGTGTCGTATGTCGTATGTCGGGT
ATTATCGGAAATTTATCGCGGAATATCAAGGCTTTACTTACGTTCGACgg
gaaaaagacaaaaaataacaacagATAGTACAAATAAATTAAGGACGACg
gactttcttttttatttcgaacTCGACGTATCGTTTTATCGCTTTTTTTA
CTCGCGTATCACTTTTCGTGGTGCATATATGTGATTTATTACTGAAATAC
TTTTTACCTCTTATATGAAAATCATGTTCTAATTGTTATGTGTCTACGTa
gatgtcccaaaaaaagcggaaatatttttataaaaagtcgAAACTCATTA
TCTAAAATGAGCtaaataattgaaataagagTACAATTCTttgttcaatc
aatagatattcaat
Run BLAST on NCBI

transcript from alignment at sc0000439:133345..136568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023038 ID=TCONS_00023038|Name=TCONS_00023038|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at sc0000439:133345..136568+ (Clytia hemisphaerica)
tagtGATCGTTATGCACGCCTTGATAGACCTCCACCCAGAGGTGGCTTTC
GTGGTAGAGGCCGTGGGCGTGGGGATTATGGTGGCCGTGGTGGTTATGGT
GGCCGAGGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGATATAC
ATAAGTTGACGGAGACTATGGTGGCCGAGGGGGTTATGGTGGCCGAGGTG
ACTATGGTCGTGATCGATATACATAAGTTGACGGAGACTATGGTGGCCGA
GGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGATATACATAAGT
TGACGGAGACTATGGTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATG
GTGGCCGAGGTGGAGGAAGAGGAAGAGGTGACTACAGCCGTGACACCTAC
CAGAGGGATCCTTACGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGC
AAGAGATCCATACCCGAGAGACCAACACAGAGATTCTTATGGAAGGGACC
CTTACTCAAAAAGTGGATACAGGGAACGCAGCCCGCCAAGAACATATGAT
TATTCAAGGTATACCTCCCATCCCCATAAAAAACGTTAGGAAAAGTTACA
CCTATGCAGAAACCATGAGATGGCTGCAAATATACCACTTTTTTATATAT
CTTTTTGAAGGGGGTACAAATACTACGCAGGGCTGAATAATAGTTCAGTT
GACTTGTATTATTCAATGTTAATACTATGAAACCATTGCCTGTACTGAGA
GTATTATTCTTCCTTATAGAGCACCTGCATCTGACCCATATGCTGCTGAA
AGAAGACGTTTAGCTTACGGGGACTCCACCCCTTCTAGTAGCTCTGCTCC
GTATGCTACTCAAAGTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCC
AACGAAGTGACCCCTATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAG
AGAGGTGATCCCTATGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAG
AAGTGACCCCTATTCAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGA
CTGACCCTTATGCTACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCT
GCGCCGTACGCCACACAAAGTNGGTGGTTATGGTGGCCGAGGAGACTATG
GTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTGGA
GGAAGAGGAAGAGGTGACTACGGCCGTGACACCTACCAGAGGGATCCTTA
CGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGCAAGAGATCCATACC
CGAGAGACCAACACAGAGATTCTTATGGAAGGGACCCTTACTCAAAAAGT
GGATACAGGGAACGCAGCCCGCCAAGAACATATGATTATTCAAGGTATAC
CTCCCATCCCCATAAAAAACGTTAGGAAAAGTTACACCTATGCAGAAACC
ATGAGATGGCTGCAAATATACCACTTTTTTATATATCTTTTTGAAGGGGG
TACAAATACTACGCAGGGCTGAATAATAGTTCAGTTGACTTGTATTATTC
AATGTTAATACTATGAAACCATTGCCTGTACTGAGAGTATTATTCTTCCT
TATAGAGCACCTGCATCTGACCCATATGCTGCTGAAAGAAGACGTTTAGC
TTACGGGGACTCCACCCCTTCTAGTAGCTCCGCTCCGTATGCTACTCAAA
GTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCCAACGAAGTGACCCC
TATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAGAGAGGTGATCCCTA
TGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAGAAGTGACCCCTATT
CAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGACTGACCCTTATGCT
ACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCTGCGCCGTACGCCAC
ACAAAGTCAAGCATCGACTGCAACTTACGCTACGCAAAGTTACGCTGCCA
CTCCATCTTATGCTACACCTGCACGTACCGCATCCTATTCCTCTTATCCA
GCTCAGACCCAATCAAGCTCCGCATATGCAACTCAAAGTTATGCAAGCTC
CTCATATGCCACTCAAAGTTATGCAAGCTCTTCATATGCAACTCAAAGTT
ATGCAAGCTCTTATCCTGCTCAAAGTCAATCGAGTGCCGCGCCTTACGCC
ACTCAAAGCCAAAACGGTGGAGCTCGTTATGCAACTCAAAGTTATGCTCA
ATATGCAGCAGACTCACCGACAAAGAGTTTGCCTTATCAGCAATCCACTA
GTGTTTCTTCTGCTTCCTATGGCACCTCAGCTTCAGCATACAGTGCACAA
CCTGCGGCTGCTACTCCTGGCTCTGCATCAGCTGGCTACAGTTACAGTTA
CCGCTAGATACCAGGTTTGATCCTTTCTAAATTGTTTTCACAACTTTTTT
TTATCGTCACAATTTTGTTGCTATACGTTTTATTTCTTCTACAGTTTGAA
GTTTTCGCTTTTTTGTTTTGTccgagaaaaagtgaaaattgttCCACTTT
TTTAGTAGTTGAATGAGAATGGGATATCCAGAACctctaattcatgatat
gcaccactggagagtcttctgagaagttatttaaaattttccacccaata
cgtcacttaaacaatagaatttttgaaaattcttggaagcCTCTTAAGTG
GTGTATATCCATGAATTAAATGTACTTTTTCAATGAGAAAGGGAGATCGA
TTCACTGAGGTTTTCAATCGTTTCTTTAGGTCGAATGCGTGATTCAAATC
CAAGCTCTTACGAAGGAAAATCGAGTCGTGTCGAGTCGTGTCGTATGTCG
TATGTCGGGTATTATCGGAAATTTATCGCGGAATATCAAGGCTTTACTTA
CGTTCGACgggaaaaagacaaaaaataacaacagATAGTACAAATAAATT
AAGGACGACggactttcttttttatttcgaacTCGACGTATCGTTTTATC
GCTTTTTTTACTCGCGTATCACTTTTCGTGGTGCATATATGTGATTTATT
ACTGAAATACTTTTTACCTCTTATATGAAAATCATGTTCTAATTGTTATG
TGTCTACGTagatgtcccaaaaaaagcggaaatatttttataaaaagtcg
AAACTCATTATCTAAAATGAGCtaaataattgaaataagagTACAATTCT
ttgttcaatcaatagatattcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012945XLOC_012945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023038-exon-sc0000439-1491911889:133345..133469TCONS_00023038-exon-sc0000439-1491911889:133345..133469Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1510915933:133345..133469TCONS_00023038-exon-sc0000439-1510915933:133345..133469Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1575043694:133345..133469TCONS_00023038-exon-sc0000439-1575043694:133345..133469Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1491911889:133686..133703TCONS_00023038-exon-sc0000439-1491911889:133686..133703Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1510915933:133686..133703TCONS_00023038-exon-sc0000439-1510915933:133686..133703Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1575043694:133686..133703TCONS_00023038-exon-sc0000439-1575043694:133686..133703Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1491911889:134522..134738TCONS_00023038-exon-sc0000439-1491911889:134522..134738Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1510915933:134522..134738TCONS_00023038-exon-sc0000439-1510915933:134522..134738Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1575043694:134522..134738TCONS_00023038-exon-sc0000439-1575043694:134522..134738Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1491911889:134950..135758TCONS_00023038-exon-sc0000439-1491911889:134950..135758Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1510915933:134950..135758TCONS_00023038-exon-sc0000439-1510915933:134950..135758Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1575043694:134950..135758TCONS_00023038-exon-sc0000439-1575043694:134950..135758Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1491911889:136124..136568TCONS_00023038-exon-sc0000439-1491911889:136124..136568Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1510915933:136124..136568TCONS_00023038-exon-sc0000439-1510915933:136124..136568Clytia hemisphaericaexon
TCONS_00023038-exon-sc0000439-1575043694:136124..136568TCONS_00023038-exon-sc0000439-1575043694:136124..136568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:133345..136568 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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