TCONS_00023039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023039
Unique NameTCONS_00023039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023039 ID=TCONS_00023039|Name=TCONS_00023039|organism=Clytia hemisphaerica|type=transcript|length=1650bp
tagtGATCGTTATGCACGCCTTGATAGACCTCCACCCAGAGGTGGCTTTC
GTGGTAGAGGCCGTGGGCGTGGGGATTATGGTGGCCGTGGTGGTTATGGT
GGCCGAGGGGGTTATGGTGGCCGAGGAGACTATGGTGGCCGAGGAGACTA
TGGTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTG
GAGGAAGAGGAAGAGGTGACTACGGCCGTGACACCTACCAGAGGGATCCT
TACGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGCAAGAGATCCATA
CCCGAGAGACCAACACAGAGATTCTTATGGAAGGGACCCTTACTCAAAAA
GTGGATACAGGGAACGCAGCCCGCCAAGAACATATGATTATTCAAGAGCA
CCTGCATCTGACCCATATGCTGCTGAAAGAAGACGTTTAGCTTACGGGGA
CTCCACCCCTTCTAGTAGCTCCGCTCCGTATGCTACTCAAAGTAAACGGG
CTGATCCTTATGCTAGTGGTCAAAGCCAACGAAGTGACCCCTATGCCAGC
CAGCGAAGTGACCCCTCTGCTAGCCAGAGAGGTGATCCCTATGCTAGCCA
AAGAAGTGATCCCTATGCTAGCCAAAGAAGTGACCCCTATTCAAAGGAAC
GATCTGCTCCCTACGCCAGCCAAACGACTGACCCTTATGCTACAAGCAGA
CCAGTACAAAGTCAGCAAGTTGCTTCTGCGCCGTACGCCACACAAAGTCA
AGCATCGACTGCAACTTACGCTACGCAAAGTTACGCTGCCACTCCATCTT
ATGCTACACCTGCACGTACCGCATCCTATTCCTCTTATCCAGCTCAGACC
CAATCAAGCTCCGCATATGCAACTCAAAGTTATGCAAGCTCCTCATATGC
CACTCAAAGTTATGCAAGCTCTTCATATGCAACTCAAAGTTATGCAAGCT
CTTATCCTGCTCAAAGTCAATCGAGTGCCGCGCCTTACGCCACTCAAAGC
CAAAACGGTGGAGCTCGTTATGCAACTCAAAGTTATGCTCAATATGCAGC
AGACTCACCGACAAAGAGTTTGCCTTATCAGCAATCCACTAGTGTTTCTT
CTGCTTCCTATGGCACCTCAGCTTCAGCATACAGTGCACAACCTGCGGCT
GCTACTCCTGGCTCTGCATCAGCTGGCTACAGTTACAGTTACCGCTAGAT
ACCAGGTCGAATGCGTGATTCAAATCCAAGCTCTTACGAAGGAAAATCGA
GTCGTGTCGAGTCGTGTCGTATGTCGTATGTCGGGTATTATCGGAAATTT
ATCGCGGAATATCAAGGCTTTACTTACGTTCGACgggaaaaagacaaaaa
ataacaacagATAGTACAAATAAATTAAGGACGACggactttctttttta
tttcgaacTCGACGTATCGTTTTATCGCTTTTTTTACTCGCGTATCACTT
TTCGTGGTGCATATATGTGATTTATTACTGAAATACTTTTTACCTCTTAT
ATGAAAATCATGTTCTAATTGTTATGTGTCTACGTagatgtcccaaaaaa
agcggaaatatttttataaaaagtcgAAACTCATTATCTAAAATGAGCta
aataattgaaataagagTACAATTCTttgttcaatcaatagatattcaat
Run BLAST on NCBI

transcript from alignment at sc0000439:133345..136568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023039 ID=TCONS_00023039|Name=TCONS_00023039|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at sc0000439:133345..136568+ (Clytia hemisphaerica)
tagtGATCGTTATGCACGCCTTGATAGACCTCCACCCAGAGGTGGCTTTC
GTGGTAGAGGCCGTGGGCGTGGGGATTATGGTGGCCGTGGTGGTTATGGT
GGCCGAGGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGATATAC
ATAAGTTGACGGAGACTATGGTGGCCGAGGGGGTTATGGTGGCCGAGGTG
ACTATGGTCGTGATCGATATACATAAGTTGACGGAGACTATGGTGGCCGA
GGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGATATACATAAGT
TGACGGAGACTATGGTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATG
GTGGCCGAGGTGGAGGAAGAGGAAGAGGTGACTACAGCCGTGACACCTAC
CAGAGGGATCCTTACGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGC
AAGAGATCCATACCCGAGAGACCAACACAGAGATTCTTATGGAAGGGACC
CTTACTCAAAAAGTGGATACAGGGAACGCAGCCCGCCAAGAACATATGAT
TATTCAAGGTATACCTCCCATCCCCATAAAAAACGTTAGGAAAAGTTACA
CCTATGCAGAAACCATGAGATGGCTGCAAATATACCACTTTTTTATATAT
CTTTTTGAAGGGGGTACAAATACTACGCAGGGCTGAATAATAGTTCAGTT
GACTTGTATTATTCAATGTTAATACTATGAAACCATTGCCTGTACTGAGA
GTATTATTCTTCCTTATAGAGCACCTGCATCTGACCCATATGCTGCTGAA
AGAAGACGTTTAGCTTACGGGGACTCCACCCCTTCTAGTAGCTCTGCTCC
GTATGCTACTCAAAGTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCC
AACGAAGTGACCCCTATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAG
AGAGGTGATCCCTATGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAG
AAGTGACCCCTATTCAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGA
CTGACCCTTATGCTACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCT
GCGCCGTACGCCACACAAAGTNGGTGGTTATGGTGGCCGAGGAGACTATG
GTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTGGA
GGAAGAGGAAGAGGTGACTACGGCCGTGACACCTACCAGAGGGATCCTTA
CGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGCAAGAGATCCATACC
CGAGAGACCAACACAGAGATTCTTATGGAAGGGACCCTTACTCAAAAAGT
GGATACAGGGAACGCAGCCCGCCAAGAACATATGATTATTCAAGGTATAC
CTCCCATCCCCATAAAAAACGTTAGGAAAAGTTACACCTATGCAGAAACC
ATGAGATGGCTGCAAATATACCACTTTTTTATATATCTTTTTGAAGGGGG
TACAAATACTACGCAGGGCTGAATAATAGTTCAGTTGACTTGTATTATTC
AATGTTAATACTATGAAACCATTGCCTGTACTGAGAGTATTATTCTTCCT
TATAGAGCACCTGCATCTGACCCATATGCTGCTGAAAGAAGACGTTTAGC
TTACGGGGACTCCACCCCTTCTAGTAGCTCCGCTCCGTATGCTACTCAAA
GTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCCAACGAAGTGACCCC
TATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAGAGAGGTGATCCCTA
TGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAGAAGTGACCCCTATT
CAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGACTGACCCTTATGCT
ACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCTGCGCCGTACGCCAC
ACAAAGTCAAGCATCGACTGCAACTTACGCTACGCAAAGTTACGCTGCCA
CTCCATCTTATGCTACACCTGCACGTACCGCATCCTATTCCTCTTATCCA
GCTCAGACCCAATCAAGCTCCGCATATGCAACTCAAAGTTATGCAAGCTC
CTCATATGCCACTCAAAGTTATGCAAGCTCTTCATATGCAACTCAAAGTT
ATGCAAGCTCTTATCCTGCTCAAAGTCAATCGAGTGCCGCGCCTTACGCC
ACTCAAAGCCAAAACGGTGGAGCTCGTTATGCAACTCAAAGTTATGCTCA
ATATGCAGCAGACTCACCGACAAAGAGTTTGCCTTATCAGCAATCCACTA
GTGTTTCTTCTGCTTCCTATGGCACCTCAGCTTCAGCATACAGTGCACAA
CCTGCGGCTGCTACTCCTGGCTCTGCATCAGCTGGCTACAGTTACAGTTA
CCGCTAGATACCAGGTTTGATCCTTTCTAAATTGTTTTCACAACTTTTTT
TTATCGTCACAATTTTGTTGCTATACGTTTTATTTCTTCTACAGTTTGAA
GTTTTCGCTTTTTTGTTTTGTccgagaaaaagtgaaaattgttCCACTTT
TTTAGTAGTTGAATGAGAATGGGATATCCAGAACctctaattcatgatat
gcaccactggagagtcttctgagaagttatttaaaattttccacccaata
cgtcacttaaacaatagaatttttgaaaattcttggaagcCTCTTAAGTG
GTGTATATCCATGAATTAAATGTACTTTTTCAATGAGAAAGGGAGATCGA
TTCACTGAGGTTTTCAATCGTTTCTTTAGGTCGAATGCGTGATTCAAATC
CAAGCTCTTACGAAGGAAAATCGAGTCGTGTCGAGTCGTGTCGTATGTCG
TATGTCGGGTATTATCGGAAATTTATCGCGGAATATCAAGGCTTTACTTA
CGTTCGACgggaaaaagacaaaaaataacaacagATAGTACAAATAAATT
AAGGACGACggactttcttttttatttcgaacTCGACGTATCGTTTTATC
GCTTTTTTTACTCGCGTATCACTTTTCGTGGTGCATATATGTGATTTATT
ACTGAAATACTTTTTACCTCTTATATGAAAATCATGTTCTAATTGTTATG
TGTCTACGTagatgtcccaaaaaaagcggaaatatttttataaaaagtcg
AAACTCATTATCTAAAATGAGCtaaataattgaaataagagTACAATTCT
ttgttcaatcaatagatattcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012945XLOC_012945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023039-exon-sc0000439-1491911889:133345..133469TCONS_00023039-exon-sc0000439-1491911889:133345..133469Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1510915933:133345..133469TCONS_00023039-exon-sc0000439-1510915933:133345..133469Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1575043694:133345..133469TCONS_00023039-exon-sc0000439-1575043694:133345..133469Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1491911889:133686..133703TCONS_00023039-exon-sc0000439-1491911889:133686..133703Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1510915933:133686..133703TCONS_00023039-exon-sc0000439-1510915933:133686..133703Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1575043694:133686..133703TCONS_00023039-exon-sc0000439-1575043694:133686..133703Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1491911889:134486..134738TCONS_00023039-exon-sc0000439-1491911889:134486..134738Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1510915933:134486..134738TCONS_00023039-exon-sc0000439-1510915933:134486..134738Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1575043694:134486..134738TCONS_00023039-exon-sc0000439-1575043694:134486..134738Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1491911889:134950..135758TCONS_00023039-exon-sc0000439-1491911889:134950..135758Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1510915933:134950..135758TCONS_00023039-exon-sc0000439-1510915933:134950..135758Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1575043694:134950..135758TCONS_00023039-exon-sc0000439-1575043694:134950..135758Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1491911889:136124..136568TCONS_00023039-exon-sc0000439-1491911889:136124..136568Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1510915933:136124..136568TCONS_00023039-exon-sc0000439-1510915933:136124..136568Clytia hemisphaericaexon
TCONS_00023039-exon-sc0000439-1575043694:136124..136568TCONS_00023039-exon-sc0000439-1575043694:136124..136568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:133345..136568 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2253	2.24172	0.565794	1.63209	2.98313	0.858887	0	0.00793253	8.29942	10.2201	3.98506	6.91019	5.56903	6.47608	4.78982	5.54165	10.4683	8.22566	3.96734	3.40953	0.271699	5.25301	3.58787	3.38053	0	0.699574	0.154784	2.48281	2.59787	4.04588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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