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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023066 ID=TCONS_00023066|Name=TCONS_00023066|organism=Clytia hemisphaerica|type=transcript|length=1161bp
CACACCACAGGTCGAAATATGAATGTGGATCTTAAAAAACAACATGGAAG
GAGTGTTTACTTTTCTATATAAGGAAGTATGAATAATACTTCTATGCACT
ATAAAAAAGAGGCAAAGCATTGgtgaaatatcttcaaaaacTGTTCAGCT
GCGATAAACCCACTACAACCCTTTtaaaaagcacgaaaaatatattcaaa
atgaagttATCAACTACAGGGATCATCTTTATTGTTCTACTTTTTACCTG
TATGGAAGTGACCAATGCCGCGGGTAATACTTTGTATCGGACCTTTGACG
GTCACCAACTTGGATACGGATGTTATAAAGGCTATTGTTGGGCTTTTTGT
TCTGACTCATGGGTTGACGGAAAATGGTGTTACACCAGACAACAAGGTTA
CCATCATGGTAAAATGTCATGCTTTAGTGACTCGTTTTGCTATGACAAAG
TTTACGGCTGTGTAGGTGCTTGTGGTTAATGAGTTATCTGGAATCAATGT
GTACTGCTACTTTCCATTAATGTGGTTATCGTAATATctaatcaaaattt
tgtttttttgtgatttaaaattgtttattatatttcttaatatttttgct
tatttcCTTATGATTCAGTATCTTGAACTTTCTATGCTAAGTGAGCTTTT
TTTGGAATAGAGAAAGTATTATAGTCTATATATGCCctcccagcggtttg
cgtgaatgcgtgaatgggctttttcacttgcgtgaatgcgtgaattagaa
agctttgcgtgaataaaaattgcgtgaatgcgtgcatttgggaaaaaaat
tagCATTATTGCGGGAACcgaaggtccgctgggggggggctcATATATAC
AGAGGACAGAGTAGTTGCATCTAATCTTTTTTGGTTTATAATTTTGAGAA
CTTTGGCTTTCTATATCTTATTATGAATTTCTACTTTAACCATACTCTCA
TTCCTTCTGAGATTATTTGAGCAGCTGTTGAACTAAACGAAAGTATGGAT
CTTCAGTAACCGAATTGTGCTGCTATGAGATGATCGAAAAAGTATGCTCT
GAAGGGTATTCCTAGCGAGAGTTAAATGCTAGTTTAATTATAATTTATCA
TTCAATTTGTAATAATTGTAATAATTGTTAGAgggaaaaaaagtgaaaaa
aaactcaaaaa Run BLAST on NCBI transcript from alignment at sc0000439:261592..263187- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023066 ID=TCONS_00023066|Name=TCONS_00023066|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at sc0000439:261592..263187- (Clytia hemisphaerica)
CACACCACAGGTCGAAATATGAATGTGGATCTTAAAAAACAACATGGAAG
GAGTGTTTACTTTTCTATATAAGGAAGTATGAATAATACTTCTATGCACT
ATAAAAAAGAGGCAAAGCATTGGTGAAATATCTTCAAAAACTGTTCAGCT
GCGATAAACCCACTACAACCCTTTTAAAAAGCACGAAAAATATATTCAAA
ATGAAGTTATCAACTACAGGGATCATCTTTATTGTTCTACTTTTTACCTG
TATGGAAGTGACCAATGCCGCGGGTAATACTTTGTATCGGACCTTTGACG
GTCACCAACTTGGATACGGATGTTATAAAGGCTATTGTTGGGCTTTTTGT
TCTGACTCATGGGTAAGTTCTTTTTTATTTATTTATGTTTTTATTTTTCT
TTCATTCATCAATTAACCCACCATACCATACAGTATTTCAAAACCAGCAA
CATTTCAATCAAAACAAAACAAGATTTGGGCTATCAATTTGATTCTGGAA
AGAATCGACGGAAGCTTAATTTTTAAAATTGTTTCATATCTAATTGAAAT
CAATAATGTTTTTCGGCGTCATCCAATCACAACCATCCAATTACAATTCA
TGATATTCATAACGTAATGTTTTCTACGGAAATACCCCGGTTTTAGCCAG
TAGTGGCAAATTTAAACTAAACAAAAGGTTAAAAAGTATAAAATTTGCCA
CTATTGGCAAAAACCGGGGTCTTTCTGTTTACGTCATGAATATCACGAAT
TCCATGTCATTTATTTTTATTATTATTTCAATCTTCATATTTTTCAGGTT
GACGGAAAATGGTGTTACACCAGACAACAAGGTTACCATCATGGTAAAAT
GTCATGCTTTAGTGACTCGTTTTGCTATGACAAAGTTTACGGCTGTGTAG
GTGCTTGTGGTTAATGAGTTATCTGGAATCAATGTGTACTGCTACTTTCC
ATTAATGTGGTTATCGTAATATCTAATCAAAATTTTGTTTTTTTGTGATT
TAAAATTGTTTATTATATTTCTTAATATTTTTGCTTATTTCCTTATGATT
CAGTATCTTGAACTTTCTATGCTAAGTGAGCTTTTTTTGGAATAGAGAAA
GTATTATAGTCTATATATGCCCTCCCAGCGGTTTGCGTGAATGCGTGAAT
GGGCTTTTTCACTTGCGTGAATGCGTGAATTAGAAAGCTTTGCGTGAATA
AAAATTGCGTGAATGCGTGCATTTGGGAAAAAAATTAGCATTATTGCGGG
AACCGAAGGTCCGCTGGGGGGGGGCTCATATATACAGAGGACAGAGTAGT
TGCATCTAATCTTTTTTGGTTTATAATTTTGAGAACTTTGGCTTTCTATA
TCTTATTATGAATTTCTACTTTAACCATACTCTCATTCCTTCTGAGATTA
TTTGAGCAGCTGTTGAACTAAACGAAAGTATGGATCTTCAGTAACCGAAT
TGTGCTGCTATGAGATGATCGAAAAAGTATGCTCTGAAGGGTATTCCTAG
CGAGAGTTAAATGCTAGTTTAATTATAATTTATCATTCAATTTGTAATAA
TTGTAATAATTGTTAGAGGGAAAAAAAGTGAAAAAAAACTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023066-exon-sc0000439-1575043694:262826..263187 | TCONS_00023066-exon-sc0000439-1575043694:262826..263187 | Clytia hemisphaerica | exon |
| TCONS_00023066-exon-sc0000439-1575043694:261592..262390 | TCONS_00023066-exon-sc0000439-1575043694:261592..262390 | Clytia hemisphaerica | exon |
| TCONS_00023066-exon-sc0000439-1510915933:262826..263187 | TCONS_00023066-exon-sc0000439-1510915933:262826..263187 | Clytia hemisphaerica | exon |
| TCONS_00023066-exon-sc0000439-1510915933:261592..262390 | TCONS_00023066-exon-sc0000439-1510915933:261592..262390 | Clytia hemisphaerica | exon |
| TCONS_00023066-exon-sc0000439-1491911889:262826..263187 | TCONS_00023066-exon-sc0000439-1491911889:262826..263187 | Clytia hemisphaerica | exon |
| TCONS_00023066-exon-sc0000439-1491911889:261592..262390 | TCONS_00023066-exon-sc0000439-1491911889:261592..262390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000439 | supercontig | sc0000439:261592..263187 - |
Blast
The following BLAST results are available for this feature:
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