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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023116 ID=TCONS_00023116|Name=TCONS_00023116|organism=Clytia hemisphaerica|type=transcript|length=2705bp
gtattTTTGGTTCCTGAGATATCGAGATtgattttttgttgaattttttt
tactcagtgaaaagtttgaatttcttctttctttcttcagatgttttttg
ggaaattttgtGGGAaataaaattcgcgaaattcgaagaaattttccaac
aaaaaccgaACATCGTCAACTCGTTGCGTGATCGTGATGGTCGGACACTT
CTCATGTATGCTGTTCGTGAAGATCATTTCGACGTTTTCGTTCACTTGAT
GAATTATCCTCAAGATTTTTCACTCGTGGACAATGTTGGTCGGAACGTTC
TTCATCGTGTTGGTGATTATGGAGAACTTCGTCATTTGGAAAAGTTTGAT
CAACAAACAATCAAAAAGTTGATCGATGGAAGAGACAACTATAACGACAC
ACCGTTGCATCTTGCAGCATGGCACAACaaacatgacgtcatcaaattgt
TGTTGGCCAAAGGAGCGGATCATGAGTTGAAAAACAATGTTGGTCAACGC
CCTGATGAACAATTTGATTATTGTGATGGTGTTACCAAAGAAATCATTCG
ATCGTTTCGTTCGTCTtgATTTTCTTTCGATGGTTTTTTGTTCGTTTCGT
CGACGCCTTCCATCAAACTTTTCCAAATTTCAACAACATTACGCATGAGA
AAAACACGCATCCGTCATCTTGACGCCGTTTACACTTACGTTATTTAATC
GCTTGACGTCTCTACGTCTTGAATCGTCTGGctacaattttgttttgatc
gaCAACGTCACTCTGGATTACGTCGATCCGTATCATAACGCTACATTAAC
GTCAaaccttttaatttttttttaatgttaagAATTTCTAAACGATAATA
CTTCGGAGGagaaatcatatttcttttcatgctgatttcTGGGAAATCGA
TTGATTAGTCTGGAAGTCACAGACCTCTATAAACTTATTTGCTAtatcat
agtttttgaaaaaaggatTATTAAAAGAAAGCTCTGTGGATGAGGCTACT
TTTTCATAAATGGTAATAGGACCATTTACTAAACCACTAAAGGTAATTGG
GGATTATTTGAGAAAGtcagatatttttttccattcttCTGAAAACTTGG
ACATAACAAAAATGTTGCAATGCTCATACAGCTGGTCCTTTTGCCTGGAT
ATCTCGTGTTTTTAATTTGATGGCAATTTGGATTCCATAAAAATGGTTCT
TAAATCTTAACCCGGGGGGAGGGCTCtcgatttctcaaaaaattggcttt
caagtCGGACAATCGGATCCTTACAGTGTAGACTTTGTTCagggaaaagg
tacccttacagtgcattttaccgaacctTTCTGACCCTgcagtttgattt
catatcttattttccTATGAAGCCAACTGAAGATGAGCCTGAGATTTCGA
CAAAATGTgcgaaacaaatcaaaatgggtacAAGTCAAAACTATAAATAT
ACATCAGAAtttactgtcagacttgcaATTCAGCAGTCCGCAAACATACA
CTGTAATCTAGCTAAAACAGACCCTTGCAGTGTACTCTATCGAAAGTACA
CCCTTAGACGGTCTCGAAAAACTTAGCTTTGAGGTGGTGGCGGTACATGG
CGTAGGACGGACCATTTCAGTGCCCCCCGGATCTTACCCCTTTTTATAAT
ATtgtgataaatttcaaaataaaactgatactcttaggtgccaaataaac
gggctctccgcttgttaattttttgaaaattttccaacccctccccccgg
accttattagtaCCCCTCGTTTATCAAtttaactttgaaaatttttttcg
gctTTTAAAGAGAAGATCCCTTATTCTGCTCTAAATatcctgattttagc
ctatatttaccttatttcgGGGTTTTCGTAATTACAATTAGGCCTCCCTC
Cgtttgttaaaattttgaaaattttccagccccccccccccttttttaaa
tttttaaaaattttaaaaaaggggggggggggggggctggaaaattttaa
aaattttccgccccccccccccgtttatttggcacctaagagtaatcgTA
AAAGTAGCTTCAAAAGTATACATCGATTTGATCATAGTTTGGCAAATTGC
TTTCatagttttattttttgcagTTATCGAACATTTGGaaagttgattta
ttcaccaaaTATTGTAGGCTACATCATATCTTCCTATgtttcgtttcgag
cgtaaaattCCTACTCTTCAGGAAACgtgcactgctcttgttttgaatat
tgatgcATGCATAAAACGAGTTATTTGAAACCTAAGCcaattttcatgtt
ttaatcattcttttcttctttgaaACCTCTTTTGTTAAGaactttaagat
ttttttagTCCCATTAATGGGCGAATTCACAGTGGGGTCACTACCGTAGT
GGCTGCCTATAGCAGTGCATACAGACCAAGAGTAAGTTCAAGAAGCCAGG
AGCTGTCTAATGTGGAAATTAACCAAAATGAGAATTTGTCCTGGGtcctg
gatggaaaatttttttaaaggaggCTAATGCAGCCGAATTAAGGGTACaa
gagagaaatttcaaaaacattttcccaaaaataaaTTAGCCGGAGTGGGG
GTAAATTGAACATACCATTTAATGACCTGGAAAGTTTTATAGTTTATTTG
TTGataactttatattttgtacatacTATTTCTGCAATATCCATAAGata
ccaaa Run BLAST on NCBI protein sequence of TCONS_00023116-protein >TCONS_00023116-protein ID=TCONS_00023116-protein|Name=TCONS_00023116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MYAVREDHFDVFVHLMNYPQDFSLVDNVGRNVLHRVGDYGELRHLEKFDQ
QTIKKLIDGRDNYNDTPLHLAAWHNKHDVIKLLLAKGADHELKNNVGQRP
DEQFDYCDGVTKEIIRSFRSS Run BLAST on NCBI transcript from alignment at sc0000443:254636..259338+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023116 ID=TCONS_00023116|Name=TCONS_00023116|organism=Clytia hemisphaerica|type=transcript|length=4703bp|location=Sequence derived from alignment at sc0000443:254636..259338+ (Clytia hemisphaerica)
gtattTTTGGTTCCTGAGATATCGAGATtgattttttgttgaattttttt
tactcagtgaaaagtttgaatttcttctttctttcttcagatgttttttg
ggaaattttgtGGGAaataaaattcgcgaaattcgaagaaattttccaac
aaaaaccgaACATCGTCAACTCGTTGCGTGATCGTGATGGTCGGACACTT
CTCATGTATGCTGTTCGTGAAGATCATTTCGACGTTTTCGTTCACTTGAT
GAATTATCCTCAAGATTTTTCACTCGTGGACAATGTTGGTCGGAACGTTC
TTCATCGTGTTGGTGATTATGGAGAACTTCGTCATTTGGAAAAGTTTGAT
CAACAAACAATCAAAAAGTTGATCGATGGAAGAGACAACTATAACGACAC
ACCGTTGCATCTTGCAGCATGGCACAACaaacatgacgtcatcaaattgt
TGTTGGCCAAAGGAGCGGATCATGAGTTGAAAAACAATGTTGGTCAACGC
CCTGATGAACAATTTGATTATTGTGATGGTGTTACCAAAGAAATCATTCG
ATCGTTTCGTTCGTCTtggtaagaaaaatatcaactttttcacgtttttt
tagggtgggattatttttttaaacattgatttAATTTCCGTGCgatggtt
tgaaactttttcaaatgaaaacgaaatgattttaatcttattttcatctt
gtttctattttattctttttgttgaattaaaaagaaatactccggattca
aaaatgtttcattgaaaaagtttgGGTTGCTTCGAAATATCTTTactttg
aacaaattttttcttttgctctTTAGATTTTCTTTCGATGGTTTTTTGTT
CGTTTCGTCGACGCCTTCCATCAAACTTTTCCAAGTAAGTCCAttcattc
aaaatatttgaagctttaaaatgttcttaacttggtcttaatattttggc
catgaagccttatgttcttaaataaagtttgttcttgaacaaaaaaaacg
tataacgaaaagaattaaaattgtTCTAGCGCagaaccacagatatctgt
aaagcccgaagggctagataggcaactttaagctttctccagcataaaaa
agtgaaacaaaaatttgactttttaaatttcgtgccgatggatagaatct
acaatcatggtcataatatattggcacttttggctaatttacaatttttc
gaaaattgaagttcgagcgagaatgtcaatttttaggccttcaacttgat
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtagcattttaattgttttcaga
gcgcgagatcaaaaaaattaggcgacaatcgctatttcgcatctctcaaa
ccagtgaaattgcttgttgtcacgtgatttctttggtaggaaatccttcc
aaacctaggcttcacttttcgataaaagccgcaaatctagcccttcgggc
tttacagatctgtgcgCAGAACCAATAGCCGTactttattttgtttaaaa
atgctgagTAAACAAATGGTAGGAGAcacgttttttcatattttactgAT
GGCCGTGAAACAATCAAACATTTTGTGAGGACAaccagaatcataaaaaa
gtgaactaAAGGACTGGGTTTGAGTTTGTTTGACatgcattttgtaattt
ttctattgtttttttatattcCAGATTTCAACAACATTACGCATGAGAAA
AACACGCATCCGTCATCTTGACGCCGTTTACACTTACGTTATTTAATCGC
TTGACGTCTCTACGTCTTGAATCGTCTGGctacaattttgttttgatcga
CAACGTCACTCTGGATTACGTCGATCCGTATCATAACGCTACATTAACGT
CAaaccttttaatttttttttaatgttaagAATTTCTAAACGATAATACT
TCGGAGGagaaatcatatttcttttcatgctgatttcTGGGAAATCGATT
GATTAGTCTGGAAGTCACAGACCTCTATAAACTTATTTGCTAtatcatag
tttttgaaaaaaggatTATTAAAAGAAAGCTCTGTGGATGAGGCTACTTT
TTCATAAATGGTAATAGGACCATTTACTAAACCACTAAAGGTAATTGGGG
ATTATTTGAGAAAGtcagatatttttttccattcttCTGAAAACTTGGAC
ATAACAAAAATGTTGCAATGCTCATACAGCTGGTCCTTTTGCCTGGATAT
CTCGTGTTTTTAATTTGATGGCAATTTGGATTCCATAAAAATGGTTCTTA
AATCTTAACCCGGGGGGAGGGCTCtcgatttctcaaaaaattggctttca
agtCGGACAATCGGATCCTTACAGTGTAGACTTTGTTCagggaaaaggta
cccttacagtgcattttaccgaacctTTCTGACCCTgcagtttgatttca
tatcttattttccTATGAAGCCAACTGAAGATGAGCCTGAGATTTCGACA
AAATGTgcgaaacaaatcaaaatgggtacAAGTCAAAACTATAAATATAC
ATCAGAAtttactgtcagacttgcaATTCAGCAGTCCGCAAACATACACT
GTAATCTAGCTAAAACAGACCCTTGCAGTGTACTCTATCGAAAGTACACC
CTTAGACGGTCTCGAAAAACTTAGCTTTGAGGTGGTGGCGGTACATGGCG
TAGGACGGACCATTTCAGTGCCCCCCGGATCTTACCCCTTTTTATAATAT
tgtgataaatttcaaaataaaactgatactcttaggtgccaaataaacgg
gctctccgcttgttaattttttgaaaattttccaacccctccccccggac
cttattagtaCCCCTCGTTTATCAAtttaactttgaaaatttttttcggc
tTTTAAAGAGAAGATCCCTTATTCTGCTCTAAATatcctgattttagcct
atatttaccttatttcgGGGTTTTCGTAATTACAATTAGGCCTCCCTCCg
tttgttaaaattttgaaaattttccagccccccccccccttttttaaatt
tttaaaaattttaaaaaaggggggggggggggggctggaaaattttaaaa
attttccgccccccccccccgtttatttggcacctaagagtaatcgTAAA
AGTAGCTTCAAAAGTATACATCGATTTGATCATAGTTTGGCAAATTGCTT
TCatagttttattttttgcagTTATCGAACATTTGGaaagttgatttatt
caccaaaTATTGTAGGCTACATCATATCTTCCTATgtttcgtttcgagcg
taaaattCCTACTCTTCAGGAAACgtgcactgctcttgttttgaatattg
atgcATGCATAAAACGAGTTATTTGAAACCTAAGCcaattttcatgtttt
aatcattcttttcttctttgaaACCTCTTTTGTTAAGaactttaagattt
ttttagTCCCATTAATGGGCGAATTCACAGTGGGGTCACTACCGTAGTGG
CTGCCTATAGCAGTGCATACAGACCAAGAGTAAGTTCAAGAAGCCAGGAG
CTGTCTAATGTGGAAATTAACCAAAATGAGAATTTGTCCTGGGtcctgga
tggaaaatttttttaaaggaggCTAATGCAGCCGAATTAAGGGTACaaga
gagaaatttcaaaaacattttcccaaaaataaaTTAGCCGGAGTGGGGGT
AAATTGAACATACCATTTAATGACCTGGAAAGTTTTATAGTTTATTTGTT
GataactttatattttgtacatacTATTTCTGCAATATCCATAAGatacc
aaa Coding sequence (CDS) from alignment at sc0000443:254636..259338+ >TCONS_00023116 ID=TCONS_00023116|Name=TCONS_00023116|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000443:254636..259338+ (Clytia hemisphaerica)
ATGTATGCTGTTCGTGAAGATCATTTCGACGTTTTCGTTCACTTGATGAA
TTATCCTCAAGATTTTTCACTCGTGGACAATGTTGGTCGGAACGTTCTTC
ATCGTGTTGGTGATTATGGAGAACTTCGTCATTTGGAAAAGTTTGATCAA
CAAACAATCAAAAAGTTGATCGATGGAAGAGACAACTATAACGACACACC
GTTGCATCTTGCAGCATGGCACAACaaacatgacgtcatcaaattgtTGT
TGGCCAAAGGAGCGGATCATGAGTTGAAAAACAATGTTGGTCAACGCCCT
GATGAACAATTTGATTATTGTGATGGTGTTACCAAAGAAATCATTCGATC
GTTTCGTTCGTCTtgAATGTATGCTGTTCGTGAAGATCATTTCGACGTTT
TCGTTCACTTGATGAATTATCCTCAAGATTTTTCACTCGTGGACAATGTT
GGTCGGAACGTTCTTCATCGTGTTGGTGATTATGGAGAACTTCGTCATTT
GGAAAAGTTTGATCAACAAACAATCAAAAAGTTGATCGATGGAAGAGACA
ACTATAACGACACACCGTTGCATCTTGCAGCATGGCACAACaaacatgac
gtcatcaaattgtTGTTGGCCAAAGGAGCGGATCATGAGTTGAAAAACAA
TGTTGGTCAACGCCCTGATGAACAATTTGATTATTGTGATGGTGTTACCA
AAGAAATCATTCGATCGTTTCGTTCGTCTtgA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023116-exon-sc0000443-1491911889:254636..255203 | TCONS_00023116-exon-sc0000443-1491911889:254636..255203 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1510915933:254636..255203 | TCONS_00023116-exon-sc0000443-1510915933:254636..255203 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1575043694:254636..255203 | TCONS_00023116-exon-sc0000443-1575043694:254636..255203 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1491911889:255462..255519 | TCONS_00023116-exon-sc0000443-1491911889:255462..255519 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1510915933:255462..255519 | TCONS_00023116-exon-sc0000443-1510915933:255462..255519 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1575043694:255462..255519 | TCONS_00023116-exon-sc0000443-1575043694:255462..255519 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1491911889:257260..259338 | TCONS_00023116-exon-sc0000443-1491911889:257260..259338 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1510915933:257260..259338 | TCONS_00023116-exon-sc0000443-1510915933:257260..259338 | Clytia hemisphaerica | exon |
| TCONS_00023116-exon-sc0000443-1575043694:257260..259338 | TCONS_00023116-exon-sc0000443-1575043694:257260..259338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000443 | supercontig | sc0000443:254636..259338 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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