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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023120 ID=TCONS_00023120|Name=TCONS_00023120|organism=Clytia hemisphaerica|type=transcript|length=2213bpRun BLAST on NCBI protein sequence of TCONS_00023120-protein >TCONS_00023120-protein ID=TCONS_00023120-protein|Name=TCONS_00023120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp LFPNRSASFNDEESNHKKEYALQLDWVYGFDSLVGIEASSTNQILFTCGRRun BLAST on NCBI transcript from alignment at sc0000443:54066..75757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023120 ID=TCONS_00023120|Name=TCONS_00023120|organism=Clytia hemisphaerica|type=transcript|length=21692bp|location=Sequence derived from alignment at sc0000443:54066..75757- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000443:54066..75757- >TCONS_00023120 ID=TCONS_00023120|Name=TCONS_00023120|organism=Clytia hemisphaerica|type=CDS|length=17172bp|location=Sequence derived from alignment at sc0000443:54066..75757- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023120 vs. Swiss-Prot (Human)
Match: EMAL2 (Echinoderm microtubule-associated protein-like 2 OS=Homo sapiens GN=EML2 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 8.384e-27 Identity = 114/460 (24.78%), Postives = 188/460 (40.87%), Query Frame = 2
Query: 65 LQLDWVYGF---DSLVGIEASSTNQILFTCGRVAVTMDTKQHKQRFFRKHSQDITCFALQDD--TAATVQCW----DGKKC--MVYVWSTVDMATISTLYVDQYEAAI----FKKIAFLSETLLVAIIESGGVNLGCIFNVKDSDPVSTTKIPDAFNGITTYYQPTATNLHFAIFGKDECRLCFYEYNNNHIISNKAANFGTLPKPKSITFALFSGKEDLLTGDSNGTILLWKRTTLKIERVVNNAHASWISSMCISQTGILFSSGNRDGLVKAWSRDLKLAVSIVSISNYSENIRNMTIFNETIFLGTGDNNILRMSIELGCNDPLREVKDSLCIVNEGQDDVISGLATDPIYKESMCSLSADGTFYTINVETKSGTNKTSVKGNGSCVCYHPSKEYTFVGCKDGSIHLLASVTGVLVDKFKDVYTSITCVQLSCDGSKLACGSSDGYLLIYHFDDSAK 1399
L+L+WVYG+ D + T +I++ VAV ++ +QR + H+ DI C A+ D T AT Q +GK V +W +V ++T+ L + ++ A+ F K LL A+ ES L K++ V +A + + PT + GK E + +S + F KPK + F D++TGDS G + +W + +I + V AH + +C + G L S G RD V W D + ++ +T+++GT N+IL+ S+ G ++ +G + + GLAT P + + D + + ++ ++ +HPS VG G LL + T LV D I+ V S DG+ LA GS D + +Y D +
Sbjct: 55 LKLEWVYGYRGRDCRANLYLLPTGEIVYFVASVAVLYSVEEQRQRHYLGHNDDIKCLAIHPDMVTIATGQVAGTTKEGKPLPPHVRIWDSVSLSTLHVLGLGVFDRAVCCVGFSKSN--GGNLLCAVDESNDHMLSVWDWAKETKVVDVKCSNEAV--LVATFHPTDPTV-LITCGKSHIYFWTLEGGS---LSKRQGLFEKHEKPKYVLCVTFLEGGDVVTGDSGGNLYVWGKGGNRITQAVLGAHDGGVFGLCALRDGTLVSGGGRDRRVVLWGSDYSKLQEVEVPEDFGPVRTVAEGHGDTLYVGTTRNSILQGSVHTG-----------FSLLVQGHVEELWGLATHP-SRAQFVTCGQDKLVHLWSSDSHQPLWSRIIEDPARSAGFHPSGSVLAVGTVTGRWLLLDTETHDLVAIHTDGNEQISVVSFSPDGAYLAVGSHDNLVYVYTVDQGGR 494 The following BLAST results are available for this feature:
BLAST of TCONS_00023120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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