TCONS_00023139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023139
Unique NameTCONS_00023139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023139 ID=TCONS_00023139|Name=TCONS_00023139|organism=Clytia hemisphaerica|type=transcript|length=564bp
cagccttttgtcgatcaaccagcaataaactttgtttgatatcttttgat
taaagAACTTATTGATATACCAAATTATATTGCTGTATTGCCAGAGGGAA
TACcgagtcagtgtactggcccaTAGCTGGTGGGGTGGTGTACTTTTTAG
GTTAAATTGAGTTAGTAAATTTCAGTTGTAAAAACACATAAACACCAGTG
AATTCCCAGTATATTTGCTCTAGTCCTATTTGTCCAAGCTGGTCTGAGAC
CTTCAAGTTAAGGCTAGTTAAGCGACACAAATTTGTACACTGATTTTCTC
CCAATGttttctgtttacttgattggatttgtttcagAGTAACAGtgtgc
gcaagtggagaccggccaatcttgtttacattttctataAGGCTCTATCT
ACATTATTTcaacaaataaattttaatgTGTAAGCGTTCGAATCGAAGCT
TTCAAGTTTTATGAAAACAAATGTCCGCTCtattgttttctgttttttaa
TAACCTTGTTGGACGtacttggaaaaaaatctgtatataagtgaaagcac
ctttttatatattt
Run BLAST on NCBI

transcript from alignment at sc0000443:236593..237156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023139 ID=TCONS_00023139|Name=TCONS_00023139|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0000443:236593..237156 (Clytia hemisphaerica)
aaatatataaaaaggtgctttcacttatatacagatttttttccaagtaC
GTCCAACAAGGTTAttaaaaaacagaaaacaataGAGCGGACATTTGTTT
TCATAAAACTTGAAAGCTTCGATTCGAACGCTTACAcattaaaatttatt
tgttgAAATAATGTAGATAGAGCCTtatagaaaatgtaaacaagattggc
cggtctccacttgcgcacaCTGTTACTctgaaacaaatccaatcaagtaa
acagaaaaCATTGGGAGAAAATCAGTGTACAAATTTGTGTCGCTTAACTA
GCCTTAACTTGAAGGTCTCAGACCAGCTTGGACAAATAGGACTAGAGCAA
ATATACTGGGAATTCACTGGTGTTTATGTGTTTTTACAACTGAAATTTAC
TAACTCAATTTAACCTAAAAAGTACACCACCCCACCAGCTAtgggccagt
acactgactcgGTATTCCCTCTGGCAATACAGCAATATAATTTGGTATAT
CAATAAGTTctttaatcaaaagatatcaaacaaagtttattgctggttga
tcgacaaaaggctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013009XLOC_013009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023139-exon-sc0000443-1491911889:236593..237156TCONS_00023139-exon-sc0000443-1491911889:236593..237156Clytia hemisphaericaexon
TCONS_00023139-exon-sc0000443-1510915933:236593..237156TCONS_00023139-exon-sc0000443-1510915933:236593..237156Clytia hemisphaericaexon
TCONS_00023139-exon-sc0000443-1575043694:236593..237156TCONS_00023139-exon-sc0000443-1575043694:236593..237156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:236593..237156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09931	0.80688	0.678925	0.962348	0.404313	0.106498	0.385456	0.121064	0.673722	1.56471	1.31625	0.465904	0.801707	0	0.579656	0.796873	0.225068	0.621155	0.212471	0.444671	2.51225	3.1106	2.5209	1.99945	0.107298	0.574567	4.85261	3.8024	3.82297	3.36023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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