TCONS_00023141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023141
Unique NameTCONS_00023141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023141 ID=TCONS_00023141|Name=TCONS_00023141|organism=Clytia hemisphaerica|type=transcript|length=788bp
CCATCAACAACTCCAAGTGTGCTGGGTGAGTCGTTTCCTTTTTAGAGTTT
GTTGTCCCATCTATACATGTCCAGCATTCCCACATGCATCTCTAACTATT
ATTATGCCTCACCCTAGCTGGATCCCCTGCACTAGTTTCAACATGGCTCA
ACTATCCCGTTTTTTATTTAGactttctcaacttcagttgagctatttAG
AATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGGTGCATGTGCAGA
TGTCGGTCGTCATCTGGATGCATGCTCAGGACCTAGGGGTTGGCTGATTT
TGCTAAAGCTTGTACATTTAAGCTCCTTGGGTAGTCCTTGGGGcattctt
cttcattcttcttggGAGTTGGCTGATTTTCTAAAGTCTTGTACATGTAG
TTCCTTGAGTGAGTCCTTGGGgcattcttcttcatttttttttggggggt
gGCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTG
GGgcattcttcttcatttttttttggggggcgGCTGATTTTGCTAAAGTT
TGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCTCCTTCATTCT
TCTTGGGAGTTGGCTGATTTTGCTAAAGTCCTGTACATGTAGTTCCTTGA
GTGAGTCCTTGGGgcattcttcttcatttttttttgggggTGGCTGATTT
TGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCT
CCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAANN
Run BLAST on NCBI

protein sequence of TCONS_00023141-protein

>TCONS_00023141-protein ID=TCONS_00023141-protein|Name=TCONS_00023141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MKENAPRTHPRSLNVQTLAKSAAPQKKMKKNAPRTHPRSLNVQTLAKSAT
PQKKMKKNAPRTHSRNYMYKTLENQPTPKKNEEECPKDYPRSLNVQALAK
SANP
Run BLAST on NCBI

transcript from alignment at sc0000444:10493..11280+

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023141 ID=TCONS_00023141|Name=TCONS_00023141|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0000444:10493..11280+ (Clytia hemisphaerica)
CCATCAACAACTCCAAGTGTGCTGGGTGAGTCGTTTCCTTTTTAGAGTTT
GTTGTCCCATCTATACATGTCCAGCATTCCCACATGCATCTCTAACTATT
ATTATGCCTCACCCTAGCTGGATCCCCTGCACTAGTTTCAACATGGCTCA
ACTATCCCGTTTTTTATTTAGactttctcaacttcagttgagctatttAG
AATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGGTGCATGTGCAGA
TGTCGGTCGTCATCTGGATGCATGCTCAGGACCTAGGGGTTGGCTGATTT
TGCTAAAGCTTGTACATTTAAGCTCCTTGGGTAGTCCTTGGGGcattctt
cttcattcttcttggGAGTTGGCTGATTTTCTAAAGTCTTGTACATGTAG
TTCCTTGAGTGAGTCCTTGGGgcattcttcttcatttttttttggggggt
gGCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTG
GGgcattcttcttcatttttttttggggggcgGCTGATTTTGCTAAAGTT
TGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCTCCTTCATTCT
TCTTGGGAGTTGGCTGATTTTGCTAAAGTCCTGTACATGTAGTTCCTTGA
GTGAGTCCTTGGGgcattcttcttcatttttttttgggggTGGCTGATTT
TGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCT
CCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAANN

Coding sequence (CDS) from alignment at sc0000444:10493..11280+

>TCONS_00023141 ID=TCONS_00023141|Name=TCONS_00023141|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000444:10493..11280+ (Clytia hemisphaerica)
CTAGGGGTTGGCTGATTTTGCTAAAGCTTGTACATTTAAGCTCCTTGGGT
AGTCCTTGGGGcattcttcttcattcttcttggGAGTTGGCTGATTTTCT
AAAGTCTTGTACATGTAGTTCCTTGAGTGAGTCCTTGGGgcattcttctt
catttttttttggggggtgGCTGATTTTGCTAAAGTTTGTACATTTAAGC
TCCTTGGGTGAGTCCTTGGGgcattcttcttcatttttttttggggggcg
GCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTGG
GGCATTCTCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013011XLOC_013011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023141-proteinTCONS_00023141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023141-exon-sc0000444-1491911889:10493..11280TCONS_00023141-exon-sc0000444-1491911889:10493..11280Clytia hemisphaericaexon
TCONS_00023141-exon-sc0000444-1510915933:10493..11280TCONS_00023141-exon-sc0000444-1510915933:10493..11280Clytia hemisphaericaexon
TCONS_00023141-exon-sc0000444-1575043694:10493..11280TCONS_00023141-exon-sc0000444-1575043694:10493..11280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:10493..11280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12064	5.30775	3.41384	1.95471	18.2658	14.1583	14.8639	19.2818	4.2036	14.4368	7.94398	2.29143	5.33876	4.18799	5.26515	12.118	11.0624	8.55281	3.61914	6.11392	4.88671	4.58275	6.00008	7.12093	5.0849	10.7148	11.6441	11.3678	15.5394	10.9643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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