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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023154 ID=TCONS_00023154|Name=TCONS_00023154|organism=Clytia hemisphaerica|type=transcript|length=2884bp
ttttaGTGAACATGAAAGAATCTTGtgcaaaaataataatagtATTGTCT
GGAAAACGTAAATCTGGGAAAGATTATGTTGCAGATAACATAGTGAAGAA
GATCTCCCCAGAGAGATGCCATATCATGAGAGTAGCTTTACCtatcaaaa
aacatttctgTGAGAAATACAACATGGACTATAAAGAAATGATGACCTCA
TCAGAATATAAAGAATTAAGACGAGCGGAGATGATCCAATGGGGTGAAGA
ACAAAGGAATAAAGATACAGGAGTATTTTGCCGTACTGAGAAAAATTCAG
CAATTGATTCTGGGAAACCAGTTTGGATTCTAAGTGATGCACGCAGACCT
AGTGATGTTAATTATTTTAGGGAATATGCCAGAAGCCTTGGTGTAACATT
TTATGCTATTCGTGTATCTGCAGATATAGAAACAAGAGAGGAGCGTGGTT
GGAAGTTTACAAAGAATGTTGATGATGTAGATTCTGAATGTGCCCTTGAT
TCTTATGACAAATGGGACTTTTGCtttgaaaattcacaaaatgatAGTGT
TATTGAAAAGGTTGAGGAACTCACTACCAATATGAAACAAATTCTCTCTA
ACTGAGACCACACTTTCATACctttatatattttgatatatACATCACTG
TTTTAGTTTCTCGCTCCTTTCccaatttgatggagatttaatTCAATATA
ATGCAGTCCaattaattttgataaattgcACAAGACTGCTCAAAATATTT
ATATCATAATATTATACTGTAGcatatttttaatgattttgtatctattt
taaaacacttaaataatataaagataatagattttgcttgattttaattt
tcttataacACACAATTTATAATATCTAATCTCTATTTTTAGGATATAAA
GCAgcaaaatggtaaaatttgaaaattttgaaatctttgagAGCGAATCG
AAAGGAAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGAT
TTTACATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAG
GAGGAAGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGC
TCAAAATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGA
TTGGAAAATCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGCACCAA
AACAACCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATAT
TATACCTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTT
AACAGACAATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCA
CCTTTAGTGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGAT
GATGCTGATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCAC
AATCACTAATTCAGAGCTAAACTCCCTAGGGACAGGATTATACAAGACAT
CTTCTTTTCTTAACCATTCATGTGATCCCAACGTTGTTGCAATCTTCAAT
GGCACCAAAATACACATCCGAACGATCAAGGAAGTGCAAGAAGGAGAAGA
GCTTTTTCTAAGCTACATCAACCTCTTAGCCACCACAAAACATCGACAGT
CTGAACTAATGGATGGGTACATGTTTACATGTAGTTGCTCCAAATGTAAT
GGTAATGGGTTTTCAGACTTGATGATGTTGAGTATGAAATGCCCACAATG
CACCTGTCTGCAATCGCTTGATACACAATCAGAAAGATCGTGTGGATGTG
ACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTCTCGATTGT
ATGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATCCCTACTCC
AGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAGACAGCTCT
TGGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGGGTATGGAC
GGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTATGGCAAAAA
GTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAACCACCCGAGTATCG
GTCTTCATTATTTTAAACAAGGAAAACTTGAGCTTCAGATGGAAAATCTT
CGTGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTATTTC
ACACGGAGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTACAAT
CAGCTTTAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAATATG
ATGAAGATGGAAGAACAATAATTTGCTGCATGAAATTCTGTTCCGTTTAA
TGATCTTGTGGAATTTTTATTATTGATTGCTGCATGTTATGGTTCAAGAT
TATCACAGGAAAGATGGTAAAAAGCAGCGAGTTCCTTTATTCTTTTGTTC
ATGTTTGGGAACTGGTTTCTTTTAGTTAAAAAAACAACCAGTGCTAGGAA
GTGGCTATGGTTCCATCCTCACACTCTGGCCTGCACTTTGAACATTTGCT
GCTCGTCATCTCTTTGTATTGGGAACCAAAGACAGTCAACAGTcaacctt
ttttttgaaatctttttatgACACACCTTACCTCATCATGCCGATTTATC
AGATTTAGTTTTCATCATCATGCGGGACAAACAGTTAGCGGCGGACATGT
GTACAGCCCTGCTGAAAATGCAAATGTTAAGCAAGCACGGCTCTGACAGT
GATGATTGTCCGATACCAACTGCTTGATGCCTCTTTTGTTTGCATtatta
cttttgtttttattttatactcTTTGTACTTATGTTGATATTTTACTGAT
CGAGCAAAATAAAGAACTGTTACATACTTCTATG Run BLAST on NCBI transcript from alignment at sc0000444:123455..126991+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023154 ID=TCONS_00023154|Name=TCONS_00023154|organism=Clytia hemisphaerica|type=transcript|length=3537bp|location=Sequence derived from alignment at sc0000444:123455..126991+ (Clytia hemisphaerica)
ttttaGTGAACATGAAAGAATCTTGtgcaaaaataataatagtATTGTCT
GGAAAACGTAAATCTGGGAAAGATTATGTTGCAGATAACATAGTGAAGAA
GATCTCCCCAGAGAGATGCCATATCATGAGAGTAGCTTTACCtatcaaaa
aacatttctgTGAGAAATACAACATGGACTATAAAGAAATGATGACCTCA
TCAGAATATAAAGAATTAAGACGAGCGGAGATGATCCAATGGGGTGAAGA
ACAAAGGAATAAAGATACAGGAGTATTTTGCCGTACTGAGAAAAATTCAG
CAATTGATTCTGGGAAACCAGTTTGGATTCTAAGTGATGCACGCAGACCT
AGTGATGTTAATTATTTTAGGGAATATGCCAGAAGCCTTGGTGTAACATT
TTATGCTATTCGTGTATCTGCAGATATAGAAACAAGAGAGGAGCGTGGTT
GGAAGTTTACAAAGAATGTTGATGATGTAGATTCTGAATGTGCCCTTGAT
TCTTATGACAAATGGGACTTTTGCtttgaaaattcacaaaatgatAGTGT
TATTGAAAAGGTTGAGGAACTCACTACCAATATGAAACAAATTCTCTCTA
ACTGAGACCACACTTTCATACctttatatattttgatatatACATCACTG
TTTTAGTTTCTCGCTCCTTTCccaatttgatggagatttaatTCAATATA
ATGCAGTCCaattaattttgataaattgcACAAGACTGCTCAAAATATTT
ATATCATAATATTATACTGTAGcatatttttaatgattttgtatctattt
taaaacacttaaataatataaagataatagattttgcttgattttaattt
tcttataacACACAATTTATAATATCTAATCTCTATTTTTAGGATATAAA
GCAgcaaaatggtaaaatttgaaaattttgaaatctttgagAGCGAATCG
AAAGGAAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGAT
TTTACATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAG
GAGGAAGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGC
TCAAAATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGA
TTGGAAAATCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGCACCAA
AACAACCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATAT
TATACCTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTT
AACAGACAATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCA
CCTTTAGTGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGAT
GATGCTGATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCAC
AATCACTAATTCAGAGCTAAACTCCCTAGGTttgttttaatcattttttt
ctatgaaaaattttcaGCACCCCAAGCTTGTAGCTAAGACCATATTTTTA
CAGTTCATATGTTCTAAAAAATTCTCTTATAACTTGCACTGGGCTTAAGG
CACAAAACGGAAAGTTTATATGCTGAGTTATATAatgttttcaatttgtt
ttattattttctttcttaGGGACAGGATTATACAAGACATCTTCTTTTCT
TAACCATTCATGTGATCCCAACGTTGTTGCAATCTTCAATGGCACCAAAA
TACACATCCGAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTTTTCTA
AGCTACATCAACCTCTTAGCCACCACAAAACATCGACAGTCTGAACTAAT
GGATGGGTACATGTTTACATGTAGTTGCTCCAAATGTAATGGTAATGGGT
TTTCAGACTTGATGATGTTGAGTATGAAATGCCCACAATGCACCTGTCTG
CAATCGCTTGATACACAATCAGGTAATGAATCTTTACGTTCTTTCTAATT
TCATGAAGTAGTTCCAAAACTAAGGGATATtgttcaatttgttttttttt
aaatagtcaGTTTCCGTTGGCAATATTTTTCAAGCTTCATGAAGGCTTTC
GACTTTGGTGCCAAtcatcatttttcaattttcgtcaTAGAAAGATCGTG
TGGATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTC
TCGATTGTATGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATC
CCTACTCCAGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAG
ACAGCTCTTGGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGG
GTATGGACGGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTAT
GGCAAAAAGTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAACCACCC
GAGTATCGGTCTTCATTATTTTAAACAAGGTATTATATTGAGCTTTCCTA
TTTTTATACAGTGTCTGGGAGATTACCAAAGTAGAGTCAATAATCACCTT
TATTCgaatttctattattcgaatttttctagtgtaattcgaactaatat
ATTGATTAATGATTAAGTcccatgaagatcgaattagagagaaagtCAAC
TGTAGTCTGTTTTCTATGTTAAGTAATATGAAAAGTGATGTAACTTTGAC
ACGTGCCTTTCTTTTCATTAACTCGTACAGATAAGCGTTTGTTTTACTAC
AAATTATTTAATCTTTATTCTTAGGAAAACTTGAGCTTCAGATGGAAAAT
CTTCGTGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTAT
TTCACACGGAGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTAC
AATCAGCTTTAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAAT
ATGATGAAGATGGAAGAACAATAATTTGCTGCATGAAATTCTGTTCCGTT
TAATGATCTTGTGGAATTTTTATTATTGATTGCTGCATGTTATGGTTCAA
GATTATCACAGGAAAGATGGTAAAAAGCAGCGAGTTCCTTTATTCTTTTG
TTCATGTTTGGGAACTGGTTTCTTTTAGTTAAAAAAACAACCAGTGCTAG
GAAGTGGCTATGGTTCCATCCTCACACTCTGGCCTGCACTTTGAACATTT
GCTGCTCGTCATCTCTTTGTATTGGGAACCAAAGACAGTCAACAGTcaac
cttttttttgaaatctttttatgACACACCTTACCTCATCATGCCGATTT
ATCAGATTTAGTTTTCATCATCATGCGGGACAAACAGTTAGCGGCGGACA
TGTGTACAGCCCTGCTGAAAATGCAAATGTTAAGCAAGCACGGCTCTGAC
AGTGATGATTGTCCGATACCAACTGCTTGATGCCTCTTTTGTTTGCATta
ttacttttgtttttattttatactcTTTGTACTTATGTTGATATTTTACT
GATCGAGCAAAATAAAGAACTGTTACATACTTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023154-exon-sc0000444-1491911889:123455..124933 | TCONS_00023154-exon-sc0000444-1491911889:123455..124933 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1510915933:123455..124933 | TCONS_00023154-exon-sc0000444-1510915933:123455..124933 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1575043694:123455..124933 | TCONS_00023154-exon-sc0000444-1575043694:123455..124933 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1491911889:125124..125426 | TCONS_00023154-exon-sc0000444-1491911889:125124..125426 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1510915933:125124..125426 | TCONS_00023154-exon-sc0000444-1510915933:125124..125426 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1575043694:125124..125426 | TCONS_00023154-exon-sc0000444-1575043694:125124..125426 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1491911889:125595..125933 | TCONS_00023154-exon-sc0000444-1491911889:125595..125933 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1510915933:125595..125933 | TCONS_00023154-exon-sc0000444-1510915933:125595..125933 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1575043694:125595..125933 | TCONS_00023154-exon-sc0000444-1575043694:125595..125933 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1491911889:126229..126991 | TCONS_00023154-exon-sc0000444-1491911889:126229..126991 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1510915933:126229..126991 | TCONS_00023154-exon-sc0000444-1510915933:126229..126991 | Clytia hemisphaerica | exon |
| TCONS_00023154-exon-sc0000444-1575043694:126229..126991 | TCONS_00023154-exon-sc0000444-1575043694:126229..126991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:123455..126991 + |
Blast
BLAST of TCONS_00023154 vs. Swiss-Prot (Human)
Match: SMYD3 (Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4) HSP 1 Score: 199.904 bits (507), Expect = 1.379e-55 Identity = 129/437 (29.52%), Postives = 208/437 (47.60%), Query Frame = 3
Query: 930 EIFESESKGKGLRAITHIDAGEEILHEEPLVYTLMNAKCRGGR---CDYCFSEDRKLFKCSKCKFVSYCGRECQSGDWKIHKYECKCLVKVAPKQPPDICRLVSHLLFKYYTSNKKTSANPSEIEALTDNRGRVTNSRKEAF----FTFSGVLFDYLKGCTFTDDA-DIYGLLCRISSNSFTITNSELNSLGTGLYKTSSFLNHSCDPNVVAIFNGTKIHIRTIKEVQEGEELFLSYINLLATTKHRQSELMDGYMFTCSCSKCNGNGFSDLMMLSMKCPQCTCLQSLDTQSERSCGCDKKCERNKSAMLKALDCMDSLEALYNSINVIPTPDQHKKLELKICKGRQLLGHCNIALLHAYEVGMDGCLDYSDWXXXXXXXXXXXXXXXXXXXXNHPSIGLHYFKQGKLELQMENLREGISYFEKAMKILCISHGEKH 2216
E F + +G GLRA+T + GE + +PL YT+ C+G R CD C KL +CS+C+ YC +CQ W HK ECKCL P+ PPD RL+ ++FK S L N ++T +KE TF + + ++ + A D++ ++ NSFTI N+E+ +G GLY + S LNHSCDPN +FNG + +R +++++ GEEL + Y+++L T++ R+ +L D Y F C C +C Q+ D ++ G D++ + LK ++ L+A + V+ + I + L NI L + MD C++ + AL YG + + Y ++ +HP G+ K GKL+L + + A I+ ++HG +H
Sbjct: 7 EKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTV----CKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC---------------------QTQDKDADMLTG-DEQVWKEVQESLKKIE---ELKAHWKWEQVLAM------CQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 408
The following BLAST results are available for this feature:
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