TCONS_00023203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023203
Unique NameTCONS_00023203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023203 ID=TCONS_00023203|Name=TCONS_00023203|organism=Clytia hemisphaerica|type=transcript|length=653bp
CggacatttttcttataaaaaattctgCTATTCGTTATTTGAAAGATAAT
GAACCTCGTGAGTCTCAAGCTCCCTCTGGAGCTTCTTATCGTGATTCGAA
AGCTTCGTCTTCAATTCGATCGACTTCTTCTTCTATGTCGACTGCAAGTC
AAAAAATGCTTAAAACAGCAGCAGATGTTGCTACTCTTGAAGTAGAGCTC
GCTTTTGCAGATAAAAAAGGGATTAGTGAAATGGATAAGACTcttcttga
agaaaaattggCAAAGAAAAAGGCTCTTTTGAACGTTTATGAAAATTGGC
AACCTAGAGTGCCACCTGATGAAAATGCATCGAGAAATTTAACTTCAGGT
TCGATTATTGAACCTTCTGAATCTCCTAAAGTTGAATCTACTAGAGTTGA
ATCTCCTAGAGGAAATCCTGAGCCTCTTAGAGCTGAAACCTCTGAATTTG
TTCCTACTGAGAATAGTCAAACTGTCGATGCATCCTCTGGTCATAAGACA
ACCTTTTTACCAGTGCCTCCTTCTGGACCAAGACCTCGTATTGCTAGAAG
ATTTGGTCTTCCTGTAGCTGCTTCCAGTCCTATAGATTCTGTACTTTCGA
ATGCAATTTTTGACTTGGTGAAACTTCAAGGTGCTCCATCTGTTGAACTT
ANN
Run BLAST on NCBI

protein sequence of TCONS_00023203-protein

>TCONS_00023203-protein ID=TCONS_00023203-protein|Name=TCONS_00023203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
DIFLIKNSAIRYLKDNEPRESQAPSGASYRDSKASSSIRSTSSSMSTASQ
KMLKTAADVATLEVELAFADKKGISEMDKTLLEEKLAKKKALLNVYENWQ
PRVPPDENASRNLTSGSIIEPSESPKVESTRVESPRGNPEPLRAETSEFV
PTENSQTVDASSGHKTTFLPVPPSGPRPRIARRFGLPVAASSPIDSVLSN
AIFDLVKLQGAPSVELX
Run BLAST on NCBI

transcript from alignment at sc0000446:156942..157594

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023203 ID=TCONS_00023203|Name=TCONS_00023203|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at sc0000446:156942..157594 (Clytia hemisphaerica)
NNTAAGTTCAACAGATGGAGCACCTTGAAGTTTCACCAAGTCAAAAATTG
CATTCGAAAGTACAGAATCTATAGGACTGGAAGCAGCTACAGGAAGACCA
AATCTTCTAGCAATACGAGGTCTTGGTCCAGAAGGAGGCACTGGTAAAAA
GGTTGTCTTATGACCAGAGGATGCATCGACAGTTTGACTATTCTCAGTAG
GAACAAATTCAGAGGTTTCAGCTCTAAGAGGCTCAGGATTTCCTCTAGGA
GATTCAACTCTAGTAGATTCAACTTTAGGAGATTCAGAAGGTTCAATAAT
CGAACCTGAAGTTAAATTTCTCGATGCATTTTCATCAGGTGGCACTCTAG
GTTGCCAATTTTCATAAACGTTCAAAAGAGCCTTTTTCTTTGccaatttt
tcttcaagaagAGTCTTATCCATTTCACTAATCCCTTTTTTATCTGCAAA
AGCGAGCTCTACTTCAAGAGTAGCAACATCTGCTGCTGTTTTAAGCATTT
TTTGACTTGCAGTCGACATAGAAGAAGAAGTCGATCGAATTGAAGACGAA
GCTTTCGAATCACGATAAGAAGCTCCAGAGGGAGCTTGAGACTCACGAGG
TTCATTATCTTTCAAATAACGAATAGcagaattttttataagaaaaatgt
ccG

Coding sequence (CDS) from alignment at sc0000446:156942..157594

>TCONS_00023203 ID=TCONS_00023203|Name=TCONS_00023203|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000446:156942..157594 (Clytia hemisphaerica)
NNTAAGTTCAACAGATGGAGCACCTTGAAGTTTCACCAAGTCAAAAATTG
CATTCGAAAGTACAGAATCTATAGGACTGGAAGCAGCTACAGGAAGACCA
AATCTTCTAGCAATACGAGGTCTTGGTCCAGAAGGAGGCACTGGTAAAAA
GGTTGTCTTATGACCAGAGGATGCATCGACAGTTTGACTATTCTCAGTAG
GAACAAATTCAGAGGTTTCAGCTCTAAGAGGCTCAGGATTTCCTCTAGGA
GATTCAACTCTAGTAGATTCAACTTTAGGAGATTCAGAAGGTTCAATAAT
CGAACCTGAAGTTAAATTTCTCGATGCATTTTCATCAGGTGGCACTCTAG
GTTGCCAATTTTCATAAACGTTCAAAAGAGCCTTTTTCTTTGccaatttt
tcttcaagaagAGTCTTATCCATTTCACTAATCCCTTTTTTATCTGCAAA
AGCGAGCTCTACTTCAAGAGTAGCAACATCTGCTGCTGTTTTAAGCATTT
TTTGACTTGCAGTCGACATAGAAGAAGAAGTCGATCGAATTGAAGACGAA
GCTTTCGAATCACGATAAGAAGCTCCAGAGGGAGCTTGAGACTCACGAGG
TTCATTATCTTTCAAATAACGAATAGcagaattttttataagaaaaatgt
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013052XLOC_013052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023203-exon-sc0000446-1491911889:156942..157594TCONS_00023203-exon-sc0000446-1491911889:156942..157594Clytia hemisphaericaexon
TCONS_00023203-exon-sc0000446-1510915933:156942..157594TCONS_00023203-exon-sc0000446-1510915933:156942..157594Clytia hemisphaericaexon
TCONS_00023203-exon-sc0000446-1575043694:156942..157594TCONS_00023203-exon-sc0000446-1575043694:156942..157594Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023203-proteinTCONS_00023203-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:156942..157594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.11629	4.51935	1.17614	0.354052	0	0.170301	0.10273	0.865573	0.404006	0.500426	0.647634	0.425729	0.531422	0.386321	0.0453726	0.0486918	0	0.184446	0	0.711074	0.0772565	0.565245	0.824556	0.583054	0.772112	0.53596	0	0.116931	0.266064	0.542155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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