TCONS_00023205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023205
Unique NameTCONS_00023205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023205 ID=TCONS_00023205|Name=TCONS_00023205|organism=Clytia hemisphaerica|type=transcript|length=850bp
AAAGCCATCAATGAGTTATCTCCATCCTCAGCTGCTGGTCCAGTTGGCAT
TTGAGAAAGTTATCAGAAGTCACAGAGTTAAACACATGGATGATAATATC
CTTTTCAACCCAAATCAACATGGCTTTAGAAGTGGGAGATTATGTTTACA
TCAGCTACTTGAGCAACATGATCTTATACTAAATCTACTCGACCAAGGAG
ACCAATGTTGATGTTATTTATTTAGGATGAGCTGgattttttacaagata
cttcactaattggtcatttgaagtgatagagatgacgcattctttagaaa
aagtaacaaatttgttttattactggttaacgaccaaccaaatcaaataa
gagcttgtaaaaactctagCTTGTCCCATTTATTTAGActtttcaaaagc
ttttgatTAAGTCGACCATTCAATTATAGTactgtcaaaattcaaaaggc
ttggaataACTGGTAAAATCTATAATTGGATAGAATCCTACTTGAGAGAC
AGACAAAAACTAGTAATGGTGAATGGTGTGAAATCGAACCAACAGGAGGT
AATGTCTGGTGTTCAACAAGGAAGTGTACTTGGACCCCTGATTTTCCTGA
TCCTCATTTGAGATATAGATGCAAATGTCATAAACTTTATCATGTCCTTT
GCAGATGACACTCGCGCCACCAAATCTATAAAAGATGCTGAAGATGTCAA
AATACTACAGCAAGAGCTTCAGATCTTATATCAATGGACAATcactaaaa
atatgaaattgaatgATACCAAATTCGAATCGTTGTGTTATGGTTCgaat
aatgaaatcaaaaagGAAACTTATTACACTTCACCATCAGGAGATAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000446:256113..256962

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023205 ID=TCONS_00023205|Name=TCONS_00023205|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0000446:256113..256962 (Clytia hemisphaerica)
ATTTTATCTCCTGATGGTGAAGTGTAATAAGTTTCctttttgatttcatt
attcGAACCATAACACAACGATTCGAATTTGGTATcattcaatttcatat
ttttagtgATTGTCCATTGATATAAGATCTGAAGCTCTTGCTGTAGTATT
TTGACATCTTCAGCATCTTTTATAGATTTGGTGGCGCGAGTGTCATCTGC
AAAGGACATGATAAAGTTTATGACATTTGCATCTATATCTCAAATGAGGA
TCAGGAAAATCAGGGGTCCAAGTACACTTCCTTGTTGAACACCAGACATT
ACCTCCTGTTGGTTCGATTTCACACCATTCACCATTACTAGTTTTTGTCT
GTCTCTCAAGTAGGATTCTATCCAATTATAGATTTTACCAGTtattccaa
gccttttgaattttgacagtACTATAATTGAATGGTCGACTTAatcaaaa
gcttttgaaaagTCTAAATAAATGGGACAAGctagagtttttacaagctc
ttatttgatttggttggtcgttaaccagtaataaaacaaatttgttactt
tttctaaagaatgcgtcatctctatcacttcaaatgaccaattagtgaag
tatcttgtaaaaaatcCAGCTCATCCTAAATAAATAACATCAACATTGGT
CTCCTTGGTCGAGTAGATTTAGTATAAGATCATGTTGCTCAAGTAGCTGA
TGTAAACATAATCTCCCACTTCTAAAGCCATGTTGATTTGGGTTGAAAAG
GATATTATCATCCATGTGTTTAACTCTGTGACTTCTGATAACTTTCTCAA
ATGCCAACTGGACCAGCAGCTGAGGATGGAGATAACTCATTGATGGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013054XLOC_013054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023205-exon-sc0000446-1491911889:256113..256962TCONS_00023205-exon-sc0000446-1491911889:256113..256962Clytia hemisphaericaexon
TCONS_00023205-exon-sc0000446-1510915933:256113..256962TCONS_00023205-exon-sc0000446-1510915933:256113..256962Clytia hemisphaericaexon
TCONS_00023205-exon-sc0000446-1575043694:256113..256962TCONS_00023205-exon-sc0000446-1575043694:256113..256962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:256113..256962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28941	0.93209	1.14027	1.12304	0.863588	0.178375	0.507418	0.610761	0.0482668	0	0.118659	0.504472	0.525476	0.160484	0.262762	0.0428165	0.167296	0.316869	0.261751	0.457911	0.610226	0.826065	0.142954	0.243524	0.35824	0.324101	0.293164	0.420424	0.0728111	0.423305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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