TCONS_00023206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023206
Unique NameTCONS_00023206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023206 ID=TCONS_00023206|Name=TCONS_00023206|organism=Clytia hemisphaerica|type=transcript|length=428bp
AATAAAGATGTTAATACCGTCTCAAATGACAATGAACGATCAGAGCCCCG
CACAGGATTTGACACCCTGAAGTTCTTTGCTGACGAAATAGTTTGGGATA
ACATAAAAAAACAGGTGGAAAATATCAAATGAAAGAAACACTTAGTGAAG
ATCAAAATGAAATAGTGGAGAAAATCAACAATATCTGTAAAGATAACATA
CCAagcagaaaacaaaacaaaggcAAAAAAAGATTCAGAGTTCAAAGGTA
TCGTCGAACTTTAatcaaaagacaaagaaaaattacaaaaaagctTTTAC
ACAGTAACTCACAAAGCAGAAAAGGCAGAAATCAAAGAGGAGTTGCTACA
AATTGAGAAAAAGCTGCAAAAATCTTTCATAGACTCGAAGCAATTTGCAG
AAAATAAAGCAGTCAATCTATAAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000446:257355..257782

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023206 ID=TCONS_00023206|Name=TCONS_00023206|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0000446:257355..257782 (Clytia hemisphaerica)
CTTTTTTATAGATTGACTGCTTTATTTTCTGCAAATTGCTTCGAGTCTAT
GAAAGATTTTTGCAGCTTTTTCTCAATTTGTAGCAACTCCTCTTTGATTT
CTGCCTTTTCTGCTTTGTGAGTTACTGTGTAAAagcttttttgtaatttt
tctttgtcttttgatTAAAGTTCGACGATACCTTTGAACTCTGAATCTTT
TTTTgcctttgttttgttttctgctTGGTATGTTATCTTTACAGATATTG
TTGATTTTCTCCACTATTTCATTTTGATCTTCACTAAGTGTTTCTTTCAT
TTGATATTTTCCACCTGTTTTTTTATGTTATCCCAAACTATTTCGTCAGC
AAAGAACTTCAGGGTGTCAAATCCTGTGCGGGGCTCTGATCGTTCATTGT
CATTTGAGACGGTATTAACATCTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013055XLOC_013055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023206-exon-sc0000446-1491911889:257355..257782TCONS_00023206-exon-sc0000446-1491911889:257355..257782Clytia hemisphaericaexon
TCONS_00023206-exon-sc0000446-1510915933:257355..257782TCONS_00023206-exon-sc0000446-1510915933:257355..257782Clytia hemisphaericaexon
TCONS_00023206-exon-sc0000446-1575043694:257355..257782TCONS_00023206-exon-sc0000446-1575043694:257355..257782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:257355..257782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.647995	1.26379	0.733693	0.358902	0	0	0	0	0.136513	0	0	0.10789	0.215481	0	0.0919883	0	0.121612	0	0	0	0	0	0	0	0.173931	0.310458	0.222133	0.237066	0	0.183194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top