TCONS_00023215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023215
Unique NameTCONS_00023215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023215 ID=TCONS_00023215|Name=TCONS_00023215|organism=Clytia hemisphaerica|type=transcript|length=634bp
cttttttggtatttttcacttCCTATGCAtaaaaaaaagtgggggaagTT
TAATTATTAAATCTAAGAGATTAAGAGATAATATATTGCCAATTGAAATA
gtatttttctatgaaaattgatgaaaaaaaatatataagagTGGTAGATA
AATTGTACAAACTGTTAAGTTAATATATTACATACAGTATAGGAGTATCG
TGATGCCTTCTGATTTCAACTACAGAATTTATACTTTTTCACGTTTCAAA
GAATCAAGTTATCAGCTTTAGGTAGCTCGGTAGAGTCAAAAAATCCTGTT
TGTACTGTTTTTACCGTGACCAATTTAGACAAGTGTgttttcgagttaag
gaaacatttGAGTTGTAGAGGTTTGAGCTCAAGAGACTCTATTTTATAAC
AACATTTCGATTCCCAGGCATCTGCACATGCGTCACCACTCCAAAGCAAG
TCCCGCCAGAAATGAAAAACTTCAAGTCAACAATTATCTACAAAAAGTGG
GGTCAAAGTTTTCAAACATAGAACCAAGATTtacatagtttctagagggg
tcaagacccccccccccttaagtgctaaccccccttaggaaattcattta
aaatttcacacccccttagaaaatcagttTAAAT
Run BLAST on NCBI

transcript from alignment at sc0000447:222375..223008+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023215 ID=TCONS_00023215|Name=TCONS_00023215|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000447:222375..223008+ (Clytia hemisphaerica)
cttttttggtatttttcacttCCTATGCAtaaaaaaaagtgggggaagTT
TAATTATTAAATCTAAGAGATTAAGAGATAATATATTGCCAATTGAAATA
gtatttttctatgaaaattgatgaaaaaaaatatataagagTGGTAGATA
AATTGTACAAACTGTTAAGTTAATATATTACATACAGTATAGGAGTATCG
TGATGCCTTCTGATTTCAACTACAGAATTTATACTTTTTCACGTTTCAAA
GAATCAAGTTATCAGCTTTAGGTAGCTCGGTAGAGTCAAAAAATCCTGTT
TGTACTGTTTTTACCGTGACCAATTTAGACAAGTGTgttttcgagttaag
gaaacatttGAGTTGTAGAGGTTTGAGCTCAAGAGACTCTATTTTATAAC
AACATTTCGATTCCCAGGCATCTGCACATGCGTCACCACTCCAAAGCAAG
TCCCGCCAGAAATGAAAAACTTCAAGTCAACAATTATCTACAAAAAGTGG
GGTCAAAGTTTTCAAACATAGAACCAAGATTtacatagtttctagagggg
tcaagacccccccccccttaagtgctaaccccccttaggaaattcattta
aaatttcacacccccttagaaaatcagttTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013060XLOC_013060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023215-exon-sc0000447-1491911889:222375..223008TCONS_00023215-exon-sc0000447-1491911889:222375..223008Clytia hemisphaericaexon
TCONS_00023215-exon-sc0000447-1510915933:222375..223008TCONS_00023215-exon-sc0000447-1510915933:222375..223008Clytia hemisphaericaexon
TCONS_00023215-exon-sc0000447-1575043694:222375..223008TCONS_00023215-exon-sc0000447-1575043694:222375..223008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000447supercontigsc0000447:222375..223008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.333908	0.305686	0.567102	1.10964	0.900588	0.958802	0.643937	0.502372	0.503404	0.441132	0.169147	0.343282	0.256924	0.233549	0.205586	0.440713	0.563993	0.260418	0.940004	2.05712	0.835948	1.60788	0.495745	0.618751	0.627379	0.63991	4.11048	2.62729	0.098269	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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