TCONS_00023240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023240
Unique NameTCONS_00023240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1071

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023240 ID=TCONS_00023240|Name=TCONS_00023240|organism=Clytia hemisphaerica|type=transcript|length=1071bp
ACCGTATTaacttatttttcttctttatccaTCTTCTCATTTCAGTGTAA
ACATtagaaatatacaaaaaaaaaactgaagaagaagaagaaagaattaA
GTGATGGTTTAAGATCAAAGTTAACAATATGATGGATTGAAATTCCGCGA
TGGAGAAACTTGAAAGCTGTCTCAGaTCCTGAATGTCTGAAGACACGTCT
TTTGCGAGTAAAAATTATCGGCTTGGTTTCGAAAATTTATGCCCTGTATA
CTTTTGTTGAAACAATTTGTTggaatttcagcaaaaaatacctaaaaaaa
aCACATCGACATTAATAAGATGGTGAAGAAACACAATAACAAGTTGAAGA
TCACCAACGATACAGGGCACATTTTGAAATACCACGGCGAATGGTTTGAT
TCAGGACGCGTGGCTGATGGATTTCGATGGCCTGAACTTATCCAAGATGG
CGGAAAAGAAACCATACTCTGCTATGAAAGGGATTGGGCGATGGCTGGAT
GTTCAGGGTACGTTCAATATCAAATCAGTGGTCAAGTTTTAACGATCGGC
TTTTCAAATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGGTTGAATGG
TAAAAAGATATGGGATGAGATGGGATGCAACGATTATTCACCACACGTCA
CGACTTTACAGATGGAAACGTTCGTATTGAAATGTCATTATTCATGTACT
GGAGGTGCTACCAACAACATTGACATCGTACTGGAAAATATAGAAAGAGT
CAGAGACAATCATCCATCGAAAGTTCTTCTTCAAGTCGTCAATGGTTCGC
ATGGTTATTGATTGAAAGTTGTGGAAAATTCATGATAATCATTACGTCAT
AATTTCAAATGTGGTGGCTAATGTGTGGCaatattttaaataattttggc
TGTTTCATGATTATCATGAATACATGTATACAATTATAGACTGGAGTCAT
TTATAATACTTATAATTATATAATAACATCCATAAAGTTTCCTTACCAAA
tcaactttttcttaaaatttggtCTTCTAACATAATAGACTATTTACATT
GTTTTAATCCATAGTTTCTAC
Run BLAST on NCBI

transcript from alignment at sc0000447:223373..229382-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023240 ID=TCONS_00023240|Name=TCONS_00023240|organism=Clytia hemisphaerica|type=transcript|length=6010bp|location=Sequence derived from alignment at sc0000447:223373..229382- (Clytia hemisphaerica)
ACCGTATTAACTTATTTTTCTTCTTTATCCATCTTCTCATTTCAGTGTAA
ACATTAGAAATATACAAAAAAAAAACTGAAGAAGAAGAAGAAAGAATTAA
GTGATGGTTTAAGATCAAAGTTAACAATATGATGGATTGAAATTCCGCGA
TGGAGAAACTTGAAAGCTGTCTCAGGTAAGAGAGATAACTTTGTTCAAAT
TTTGGGTTGTCCAATATCAAGGCAAATATTTTATGGGAGGTGGCAGGTTA
GGAGTGCTGCGCAGGAGAAGATTTATTCAAAGGTTTATTAGAAAATGATG
TACGATGTATTCTCACTTGACTTTCGCCGCCTGGAATGTTTGAAAATATA
TTACACAACTTTTCAGAAGCTACCTGTAAAAAAAGTTTCCATCGGATCTT
CTTGTAGTACTATTGCTAAAATTATTGAAACAATGCTTCCCTGTAAAAAG
TCTTTCGTGATCCTGTGCCATTTTCATGTTTAACTACCTTATCGACCCTT
TTTACACCGGCCCTTATTGGCGTTATTTTTGGGCTCGAAGCGTAATAAGG
GTCGGCGTTAAAAGGATTGTTTTGGTCAAAGCACTTGTTAAACATTTTTG
AAAAGCTAAGGGGTAGGGAAATCAAAATAACTTAGGTTCCAATCTTTTTT
CTGACACTTTGGTGTGATTTTCGGACAAATATGACGGTCTCTAGCAAAAA
TAATAGTGTCAAAAATTTAATGAAACTTTTAGCTTGAGAAAACGGAGACC
TGTTGTATATTTCTCGAAAGCTCTCAAAAAATTAAGATTAGAGATGTATT
GCGATATAGGTGATTTCAGTACTTAACTCGAGATATTGAGCTTTAAAAAA
GCGCAAAAACTGGACAAAACAGCTGTTTCTGGCTGAAAACACTGTTATTA
AGGGTTAATATCTTTTACGACTTTTACGATGATCTATGACATCTTGCATC
GGACGCAACCGAAGGGGGTAGAAATGATGTAGACAAAGTCGCTTAAACAA
TCACAGTGGTCTATTGAATAACTTATTACATCGATGCTTGAATTTTATTA
ATGAAAACATCATCTAATTATGATTTGTCTTTTACTCCATATCTGTTGCC
TAGAAACAAAATAATTAATCTCATTTGTACACATAATGGATTTTTGACTT
GAAAAAGACAAGACGTAGAAATATCGTTTCAAAAAATGTAATAGCTTTTA
TTTTAATAGATTTTGTAGGTGCTGGAGTAAAAAATGCGACATTTCTTCTT
ATCTATATCTTTTTTGGATCGGGTGCACTTATCGGTACCCAAGGTAGCAT
TCTTTACCTGATCCCTTTTTTTGTACAGAACGATGAATCATGATCAGTTC
GAACACTTGTTTGTTGTGTATGTTTGACTGAAGTGTGTACGTTGCAACAA
AAGTCTTTTAAAATATCTTTCAGCTAAAAACTTAATTAAAGGGACATAAA
AGTACTGACAAAATTTGTAAACAAACCGTATGCAGCGGGATACAAAATCG
AAACAAATGTCACTTGTCAAAATAAAAAATAAAAATAAATATGGCTGATT
TTAATTGTTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAAT
TGTTCTCTTTAATGGCACGTGGTTTGCGCAATGTTTACGTTTTACTAATT
TTATGTCTCTTTAAACATGTTCTTATTTTCATCATTTTTATAGCATTTTT
TAACCATTTTACTGAGAAATTGGGTGTTTTGAAGTCCCAAGAGCCTTAAG
ATGTTCAAAACTTGTTCTTAACAGTTTGGCCATCGGAGCTTTATGTTCTT
GTACAGTTTGTTCTTATAAAAAACTTGTAGTTAAGGGGGCCCTTGCAGTT
TGCGTGAATGCGTGAATCGGAAAGCTTTGCGTGAACAAAAATTGCGTGAA
TTGCGAAAAAAACATTGCGTGATTGCGTGAATTGAAGGTCCACTGGAGGG
GCCTCATCAAGGATAAAGGGGATCTCCGAGCGCCTCTGAGACGCAAGTAT
CAGCGAGTTCTTGTATGATGCTTGTAGACGGTAAGTTTTCATGTTTTTTT
AGATCCTGAATGTCTGAAGACACGTCTTTTGCGAGTAAAAATTATCGGCT
TGGTTTCGAAAATTTATGCCCTGTATACTTTTGTTGAAACAATTTGTTGG
AATTTCAGCAAAAAATACCTAAAAAAAACACATCGACATTAATAAGATGG
TGAAGAAACACAATAACAAGTTGAAGATCACCAACGATACAGGGCACATT
TTGAAATACCACGGCGAATGGTTTGATTCAGGACGCGTGGCTGATGGATT
TCGATGGCCTGAACTTATCCAAGATGGCGGAAAAGAAACCATACTCTGCT
ATGAAAGTATGTGTTGAATATTTATAATCTGTCTTAATAAAAATAAAGCC
AGGGGGCATCCTGAAATTTGCAATTGTGCTTAGCTCTGTCTTACTCATAT
CAATTTCAAACATTACACAATTTTAGAATATTTCCTGATAAAAGCGATGA
AGATTTAGAGGCGTTCATGATGGCTTATCTCAAAATTAGGCATGGAGACG
AGGTTGTGCGACACTAACAGTTGATAGCTAACAAAAACTCGAAGTCAATA
CTCTGTTGATCTTAGCAATTTACAGTCTCCTTCAAAGACTTTTAAAAAAT
GATATATTTTAGGGGATTGGGCGATGGCTGGATGTTCAGGGTACGTTCAA
TATCAAATCAGTGGTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGC
TGGAAAGAATAAAGTTGGAGTCGGGTTGAATGGTAAAAAGGTGAGATTTT
TAACACTTACCAAAGTCAAACCCAATCCCTTAGTTCGCCTTTTTTATGAT
TCTGATAGCGCTCATGAACGATTATACTGATGTCCATCAGTAGAAAAAAA
ATGATGGAAGGGTAACACTTACCAAAGTCAAACCCAGCCCCTTAGTTCGC
CTTTTTTATGATTCTGATAGCGCTCACGAAAGATTATACTGAAAAATGAA
ATGATGAAAAAGTGATGGAAGGGGCTCTGGGTTCGTACAAGATTGCTAAG
ACTCACCAAACTAAAAAAGATCGAAATAAAAGTTTTGTAAGATTAACCGT
GCAAAAAAAGGCACCAACGTATGGGGACGTCGAAAGCACCGTACGGATAG
ATCAATAATTTTCAGACACTCACCCTTGCTACTTTCATCCCGCTGATTAA
GAAACCAATAAAATTAGTTTAGTCTTTTCTTAACCCTGCCTGGATGTTTA
TGTGCTTATCTGATCGAGGCAAACAAAATTTTGGAGCTTTGATGTATATT
ATCTTATTATACATGTTTTTTTTATAAGCAAGTGTATGCCCCTTGGTCAG
GCTCGTTTATGCTTAAGTTATTAAAGCATCTAGGCATAGCTTATGCTTAT
TATATGCTTATGATTCACCCCGAGCCAAGTTTTTAGTGAAATTTCAGAAA
TTCTGTGAACGTTTTTTCAGATTTTGGGAGCAGTGGAATGTAGCTAGCCG
TGGAATGTCTTATTTTTTACTTGACCTCTACCAAACCTTTTTAAACATAT
GAAAAATGACAACTTGAAAAATGTTCCAAGCTGACATATTATGCTTATGT
TATGAGTAGGAATTCTGCAAATTTGAGCCTTCATATGCTTATAAGCGTTA
TGCTTACAAAAAAAAATCCGAACTCTCCCATTCTCGCATGAAGCTTTTTT
GCTAGCGATTTCTAAACGCACGGCTATGCTTTTTCACGATCTTTCTGTAT
TGATTCAATTGGTCAATTTTCAGCTCTAAAATGAAAGCCCTGGAAACATT
TTTTTTCCATTTTCTAATCTTTATTTTAAAGAACGTTTTGAAACGGTCTC
TCATTTTTTTTTTTTTTTTCATTAATTTTAGTCACCTCGTCAAAATTTAG
TCACTAAGTTCCGACTAATAATTAAGACTGACTAACTAACTGTATCTTTG
CTAAGGTAATACTGATATGAAAAGTAGGTTAAGGAAAGCTTAATTATAAA
CTTTTAATTTGGCCCAAAGTTTTAGTTGATTCCCTGGACACTCAAAATTA
CCGTAAGACAGAGCAAGTAAAGTGAGTAAGTCTGCGACCGCAGTCAGAGG
CGACCCGAAGGCTCCTCTTTCGATAGCTATCTACCCGAAGATAGGGGAGG
GCGCCACTCTTTCTCCCTGTATTGCTATCTACTTACCCTTGATCCTTCTC
TTAATTGCTGAGCATCAAGCAGAGAGGCATCAAGTACCGTTTTGGGAATC
CTTGGTATGACCCGGCTGGGAGTTGAACCCACAACCTTGCTCACCGTAGC
CGGGTGCTCTACCACTGCACTACGGTCGCTGAACTGTAAAACAAAATCAA
AACAGAGCAAAGCCCCCCAAATAGAGCAAGTTTACCCCGGACAAGGCAAA
TTTTGTAGATTTTTCACACACCCCCGGACACTATATCCTCCACCCCTTAT
GTACATTTTCTGGAAGAGCCCAATGCGCATTTATTGAGCTTTCTATTCGA
AATAATCACCATAAATATCTTTTGCATAGATATGGGATGAGATGGGATGC
AACGATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTATT
GAAATGTCATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATCG
TACTGGAAAATATAGAAAGGTTTGTGATGAATTACGTTATATTAAGGGAA
GAAATTTTGGCGGAAAGAAATTTTGAAAATAAAGAAAACGCAAACTGTTT
TTTTCCTGCCATGAACCAACAAATTAAATTCCCTCTAAATTTCAATTACT
GCATTTATTACCCAGATGTGTGCTATTTCAGGCCTTAAAACATGTTTTTG
GACCTACCTTGAGGTCCTATAAATGAACCGTTGTCCGTTCGTCCATCCGT
CCGTTCGTCTGTTACAAGCTCTCATCCTTCCGTGATTTCTTAGCTCATTT
CTTTTGATTCTCGATATTTGTGGAGTAAAAAGTAAATTATCTTATTGATA
ATTATAGACATGATGATTAGTTTATAATTTGATCAGAAATAAAATACAAC
CAATTACTTATATATTTTCAATAGTGTTTATAATTTCTCCCAATAGATAT
GCTTTCATTATAATATCCGAACTATTTTCTCAAAAATCTTTGATTTTATT
ATCAGGTAAGGTCCATAAAAGTTGATAGCAATTCCAAATATTTTCTAAAA
AAATTCCGGGGCAGCCAATCATCGTGCTGGAAAAACGGGTTTTCTCCGTC
CCTTCGTTCGTTAGGATCTTTTCCATAAATGTCAACTTTCATTATCAGGT
AGGTCTAATCAACACCGATCTTGTTTCTTATCTAATTGCGTTTTTTAGAC
AAAAATCTCCTTCATCCCCCAAATTAAATCCCCCCCAAATTTAGTTTTTC
AAGCCAAATTAAATTCCTGTCAAAATTTCTTTCCACACTAACATCGGTTA
AAAAAATTCGAACAAAATTTCCAAAAAGTTACAAAGACGAATTCATTATG
TACTTTTTCAATTACCTCTGGTAGTGCCATGTAGTCCCAACAGCTGATTG
GTTATGAATAATTTAAAATCAGTCTATACCTCATCTGCAACCAATCAGCT
ATTCATGCACCATTGCAATATTTTCTGACATTTCATCACTGACCCAACAG
CTGATTGTAAGTAATGTACACCTCCTTTTTCTTCAGAGTCAGAGACAATC
ATCCATCGAAAGTTCTTCTTCAAGTCGTCAATGGTTCGCATGGTTATTGA
TTGAAAGTTGTGGAAAATTCATGATAATCATTACGTCATAATTTCAAATG
TGGTGGCTAATGTGTGGCAATATTTTAAATAATTTTGGCTGTTTCATGAT
TATCATGAATACATGTATACAATTATAGACTGGAGTCATTTATAATACTT
ATAATTATATAATAACATCCATAAAGTTTCCTTACCAAATCAACTTTTTC
TTAAAATTTGGTCTTCTAACATAATAGACTATTTACATTGTTTTAATCCA
TAGTTTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013067XLOC_013067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023240-exon-sc0000447-1575043694:229208..229382TCONS_00023240-exon-sc0000447-1575043694:229208..229382Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1575043694:227027..227330TCONS_00023240-exon-sc0000447-1575043694:227027..227330Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1575043694:226593..226720TCONS_00023240-exon-sc0000447-1575043694:226593..226720Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1575043694:224714..224853TCONS_00023240-exon-sc0000447-1575043694:224714..224853Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1575043694:223373..223696TCONS_00023240-exon-sc0000447-1575043694:223373..223696Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1510915933:229208..229382TCONS_00023240-exon-sc0000447-1510915933:229208..229382Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1510915933:227027..227330TCONS_00023240-exon-sc0000447-1510915933:227027..227330Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1510915933:226593..226720TCONS_00023240-exon-sc0000447-1510915933:226593..226720Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1510915933:224714..224853TCONS_00023240-exon-sc0000447-1510915933:224714..224853Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1510915933:223373..223696TCONS_00023240-exon-sc0000447-1510915933:223373..223696Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1491911889:229208..229382TCONS_00023240-exon-sc0000447-1491911889:229208..229382Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1491911889:227027..227330TCONS_00023240-exon-sc0000447-1491911889:227027..227330Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1491911889:226593..226720TCONS_00023240-exon-sc0000447-1491911889:226593..226720Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1491911889:224714..224853TCONS_00023240-exon-sc0000447-1491911889:224714..224853Clytia hemisphaericaexon
TCONS_00023240-exon-sc0000447-1491911889:223373..223696TCONS_00023240-exon-sc0000447-1491911889:223373..223696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000447supercontigsc0000447:223373..229382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.09868	7.61046	2.92798	6.60105	2.99394	4.15305	0.827737	0.969467	1.25975	0.698708	3.5005e-05	0.78911	0.564581	0.260799	0.536436	1.55422	3.42709	0.252574	1.39592	0.5682	1.91023	1.26913	1.59541	1.28365	0	1.60355	0	0.760516	0.24143	0.353141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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