TCONS_00023245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023245
Unique NameTCONS_00023245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023245 ID=TCONS_00023245|Name=TCONS_00023245|organism=Clytia hemisphaerica|type=transcript|length=453bp
GGTTATTTTGCATCCATTACAAAAGCAAAAAAGATATCAAATAACACTGA
ACGTACATAAGTGTACTTGACAAAATCTCGTGGTGGCCTTACTTTATTTC
ATTTCACTTATTCTACACACACGCATAGACAGAGAGGTCGCTGCTAGCTA
TCAAACATAACAAGACTTCTGACCGAAAATAAACTTTGGAGATTAAGTTT
TCTCGTACATTGCTGCTGCATTGGATTTGTCATTTCCTTACACGCACCCA
TTGACAAAAATTGTTATCAGCACAAAGGATTTTTGTACTCCACATTTTCA
TTTAGAATTTTTATCGTATTGGAATTTTGATAATCAATTTTATAGTATCA
TATCATACACATTGTTGGCAATGTATTTCACAAGCAAAAGGATAATGCAA
TTTTTGGTTGTCTTTTACATTGTGACTTTATTGATCAGTTTCGCAACAGA
GGN
Run BLAST on NCBI

transcript from alignment at sc0000447:122856..123308

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023245 ID=TCONS_00023245|Name=TCONS_00023245|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at sc0000447:122856..123308 (Clytia hemisphaerica)
NCCTCTGTTGCGAAACTGATCAATAAAGTCACAATGTAAAAGACAACCAA
AAATTGCATTATCCTTTTGCTTGTGAAATACATTGCCAACAATGTGTATG
ATATGATACTATAAAATTGATTATCAAAATTCCAATACGATAAAAATTCT
AAATGAAAATGTGGAGTACAAAAATCCTTTGTGCTGATAACAATTTTTGT
CAATGGGTGCGTGTAAGGAAATGACAAATCCAATGCAGCAGCAATGTACG
AGAAAACTTAATCTCCAAAGTTTATTTTCGGTCAGAAGTCTTGTTATGTT
TGATAGCTAGCAGCGACCTCTCTGTCTATGCGTGTGTGTAGAATAAGTGA
AATGAAATAAAGTAAGGCCACCACGAGATTTTGTCAAGTACACTTATGTA
CGTTCAGTGTTATTTGATATCTTTTTTGCTTTTGTAATGGATGCAAAATA
ACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013072XLOC_013072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023245-exon-sc0000447-1491911889:122856..123308TCONS_00023245-exon-sc0000447-1491911889:122856..123308Clytia hemisphaericaexon
TCONS_00023245-exon-sc0000447-1510915933:122856..123308TCONS_00023245-exon-sc0000447-1510915933:122856..123308Clytia hemisphaericaexon
TCONS_00023245-exon-sc0000447-1575043694:122856..123308TCONS_00023245-exon-sc0000447-1575043694:122856..123308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000447supercontigsc0000447:122856..123308 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.154946	0	0.175007	0	0	0.14731	0	4.35156	3.91659	2.55946	2.12647	5.02098	3.91569	5.25518	3.2348	3.7957	3.70282	2.00056	2.12193	3.59053	1.39325	0.398746	0	0.48415	0.82212
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top