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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023253 ID=TCONS_00023253|Name=TCONS_00023253|organism=Clytia hemisphaerica|type=transcript|length=927bp
atattctttttatttagaTATACCACTCCCTTTACTCAAATACATCTTTT
GAGTTTAGCGCCGGCTCTTTTTCTAGACAAGCTAACCTTATAAATAGGGG
GGTTCTAGCTGTTTGCTCAATCATCAACAATCAAAGAGATCAACCACAAG
AACACTGACGGACTAGAAGAAAGTAGGGACAAAAACACATTGTCGAACGT
AttcaagaaagtttttcaagatTAACATTCGATATGAACAAGCTTTTATG
TATTCCAGTTCTTTTGACAATGATGTTTGTCTTTGTATCGACTGCTAACA
ATCAGgaatgCAAAGATGGGCGTGACGGTCGGGATGGAAAAGATGGAAAG
GACGGCAGAGACGGCAAAGACGGAGTCTGTTTATATCGAAAAGGCATATT
CGTAATAAAgggagaaaaaggaaaagatggCAGAGATGGAAAGGATGGAA
AAGACGGTGTGACAAAAAACTGGAAAGAATGCGCTTGGAACAAAATTAAC
GAATACAAAGATAGTGGTGTTATAAAGTCTTGCGATTTCAAAAAGGAATC
TCGCTCTACTCACTTGAAAGTCTTCGTATCTTCGGTTATGAGAATACACA
ATTGCAATAAGTGCTGTAAAAGATGGTTTGTCACATTCGATGGACAGGAA
TGTGCACCTGTGCCGATAGACGGTATCGTTTATATGCATGCAGGTGCTGG
AAACCGTATGAAAAATCTACATCGAACACGAGTTATCGCTGGACATTGTA
aggtttcgaaaaaaaatcaaatcaatgtgGCCCTTAATGTTGGTGATTGT
ACTGGGTATCCCGGGGGCGACGCATCCACTGGGTGGAATTCAGCAACACG
AATTTACATTGAAGAAGTTGACCAGCCACAATCTTAAAAcaagttttttg
tttgaaaaatataaataaaagataaac Run BLAST on NCBI protein sequence of TCONS_00023253-protein >TCONS_00023253-protein ID=TCONS_00023253-protein|Name=TCONS_00023253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MNKLLCIPVLLTMMFVFVSTANNQECKDGRDGRDGKDGKDGRDGKDGVCL
YRKGIFVIKGEKGKDGRDGKDGKDGVTKNWKECAWNKINEYKDSGVIKSC
DFKKESRSTHLKVFVSSVMRIHNCNKCCKRWFVTFDGQECAPVPIDGIVY
MHAGAGNRMKNLHRTRVIAGHCKVSKKNQINVALNVGDCTGYPGGDASTG
WNSATRIYIEEVDQPQS Run BLAST on NCBI transcript from alignment at sc0000449:110643..113105+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023253 ID=TCONS_00023253|Name=TCONS_00023253|organism=Clytia hemisphaerica|type=transcript|length=2463bp|location=Sequence derived from alignment at sc0000449:110643..113105+ (Clytia hemisphaerica)
atattctttttatttagaTATACCACTCCCTTTACTCAAATACATCTTTT
GAGTTTAGCGCCGGCTCTTTTTCTAGACAAGCTAACCTTATAAATAGGGG
GGTTCTAGCTGTTTGCTCAATCATCAACAATCAAAGAGATCAACCACAAG
AACACTGACGGACTAGAAGAAAGTAGGGACAAAAACACATTGTCGAACGT
AttcaagaaagtttttcaagatTAACATTCGATATGAACAAGCTTTTATG
TATTCCAGTTCTTTTGACAATGATGTTTGTCTTTGTATCGACTGCTAACA
ATCAGGTGGGTAATCagtgtttataattttttcattaaaaacaaactaac
taatcggggaaaaaatgtcagagtttatttagtcggggttctttttcgtc
gggaaaaaaattcttcacctagaggcattttcgtcactttcccacgatat
tttttccccgatgaggtatataagaacattatacATCGATgaccgaaaaa
ttaagaacaagttaggagTATTTTAAGGGTTTGCGGACGTAAGAAgtcgt
attgtataagggttgcgaagcgatggTGAATAAAAGAACAGTTTAAGAAC
CTttttagttcaaaagttatggacgTGTAAAATTGACCTTAAAAAGCATT
AAATTGCTCCCCGAAATTGTCTTAAAACGGCTCGTGTGGATCAATTGGGC
AcagttttcagaaaaatgtgAATATTTCGTTGAAATAAGATTTTCAACCC
CTAAATTGAAATATAGGCCTAAAAGGtctaaaaataccatttttcataaa
ttttgccTTAAGTGCAAATCAGTGCCCCTAACTATAAAAAAGGACAGAAA
ACGATaggctaaattttcaaaaaaacatcaatCTTGAATTTTCGACCCAG
AAGGGACTGTTGACCCCTACAATACTGAAAGATTCTTGGTGATTTACGTG
ATGAATTTTTTAGCTTTGTAGCTTTCCAAAAGCTTTGAAAGATAACTATG
TCGCATCAAAGGTTTACAAACCCTAGAGGTTTTTCAGTCATTCctaattt
taaaaatgattttttttatataaggaatgCAAAGATGGGCGTGACGGTCG
GGATGGAAAAGATGGAAAGGACGGCAGAGACGGCAAAGACGGAGTCTGTT
TATATCGAAAAGGCATATTCGTAATAAAgggagaaaaaggaaaagatggC
AGAGATGGAAAGGATGGAAAAGACGGTGTGACAAAAAACTGGAAAGAATG
CGCTTGGAACAAAATTAACGAATACAAAGATAGTGGTGTTATAAAGGTAG
GCTATAAAATAGGCGCATTGTTACAATTGCTGTCAGTAGGAAAAGCTCTG
CTTTCAGTTCTGTCATCAAATATGTCTAACATAAAACACTAGATCAAGCC
ATTCTGTCCATTGATTGAACAAATTTCTGGTCTACTGTTGTCCACTTTTC
GAaaagattgttttgttttaactGCAGCAGGCTTGGAAAAAACGGattag
ctctatctagtgtttatTATTACGCATAGCATACACAACTGTGTTTTTTA
TGTTCACCTAGTGTTTATTATTAGATATTTTTGGTCCTACCTAGCAAACA
TACCCCGAAAATGGTATGGTATTGGTCCATGATGCATATCATAAAGAAAA
TTAGAACCTTTTATAATAATACGATTCTtcataatttcagaaaaatcttt
ACAATCACGAATAATAAATACTCCTCCACCACTCATTAATGGTTGGATTG
TTTTGCAAACCCCCCGCCTTTATCAAGTTAAAAATACTTTCGgctgtcaa
aagaaaagtacCATATGTTTCTCTAAATAGCCAGATTTTAGTCTATAATT
ATACCTTACCAACCCCCTTGTTAATCAGACATCTGAGAGTACAGTTTATT
AGGTCAGAACCACGAATATATAAGAATCTGGTTGATTTCGAAGATCAGCC
TTTACAAAGAATAGTTCCCATTATATAAAccaaattgaataaaaatgaaa
taatcgGTATCATTAACCATTTCTattattgattgaaaaaaaccCGACCT
TTCTTTTTTTTAGTCTTGCGATTTCAAAAAGGAATCTCGCTCTACTCACT
TGAAAGTCTTCGTATCTTCGGTTATGAGAATACACAATTGCAATAAGTGC
TGTAAAAGATGGTTTGTCACATTCGATGGACAGGAATGTGCACCTGTGCC
GATAGACGGTATCGTTTATATGCATGCAGGTGCTGGAAACCGTATGAAAA
ATCTACATCGAACACGAGTTATCGCTGGACATTGTAaggtttcgaaaaaa
aatcaaatcaatgtgGCCCTTAATGTTGGTGATTGTACTGGGTATCCCGG
GGGCGACGCATCCACTGGGTGGAATTCAGCAACACGAATTTACATTGAAG
AAGTTGACCAGCCACAATCTTAAAAcaagttttttgtttgaaaaatataa
ataaaagataaac Coding sequence (CDS) from alignment at sc0000449:110643..113105+ >TCONS_00023253 ID=TCONS_00023253|Name=TCONS_00023253|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000449:110643..113105+ (Clytia hemisphaerica)
ATGAACAAGCTTTTATGTATTCCAGTTCTTTTGACAATGATGTTTGTCTT
TGTATCGACTGCTAACAATCAGgaatgCAAAGATGGGCGTGACGGTCGGG
ATGGAAAAGATGGAAAGGACGGCAGAGACGGCAAAGACGGAGTCTGTTTA
TATCGAAAAGGCATATTCGTAATAAAgggagaaaaaggaaaagatggCAG
AGATGGAAAGGATGGAAAAGACGGTGTGACAAAAAACTGGAAAGAATGCG
CTTGGAACAAAATTAACGAATACAAAGATAGTGGTGTTATAAAGTCTTGC
GATTTCAAAAAGGAATCTCGCTCTACTCACTTGAAAGTCTTCGTATCTTC
GGTTATGAGAATACACAATTGCAATAAGTGCTGTAAAAGATGGTTTGTCA
CATTCGATGGACAGGAATGTGCACCTGTGCCGATAGACGGTATCGTTTAT
ATGCATGCAGGTGCTGGAAACCGTATGAAAAATCTACATCGAACACGAGT
TATCGCTGGACATTGTAaggtttcgaaaaaaaatcaaatcaatgtgGCCC
TTAATGTTGGTGATTGTACTGGGTATCCCGGGGGCGACGCATCCACTGGG
TGGAATTCAGCAACACGAATTTACATTGAAGAAGTTGACCAGCCACAATC
TTAAATGAACAAGCTTTTATGTATTCCAGTTCTTTTGACAATGATGTTTG
TCTTTGTATCGACTGCTAACAATCAGgaatgCAAAGATGGGCGTGACGGT
CGGGATGGAAAAGATGGAAAGGACGGCAGAGACGGCAAAGACGGAGTCTG
TTTATATCGAAAAGGCATATTCGTAATAAAgggagaaaaaggaaaagatg
gCAGAGATGGAAAGGATGGAAAAGACGGTGTGACAAAAAACTGGAAAGAA
TGCGCTTGGAACAAAATTAACGAATACAAAGATAGTGGTGTTATAAAGTC
TTGCGATTTCAAAAAGGAATCTCGCTCTACTCACTTGAAAGTCTTCGTAT
CTTCGGTTATGAGAATACACAATTGCAATAAGTGCTGTAAAAGATGGTTT
GTCACATTCGATGGACAGGAATGTGCACCTGTGCCGATAGACGGTATCGT
TTATATGCATGCAGGTGCTGGAAACCGTATGAAAAATCTACATCGAACAC
GAGTTATCGCTGGACATTGTAaggtttcgaaaaaaaatcaaatcaatgtg
GCCCTTAATGTTGGTGATTGTACTGGGTATCCCGGGGGCGACGCATCCAC
TGGGTGGAATTCAGCAACACGAATTTACATTGAAGAAGTTGACCAGCCAC
AATCTTAAATGAACAAGCTTTTATGTATTCCAGTTCTTTTGACAATGATG
TTTGTCTTTGTATCGACTGCTAACAATCAGgaatgCAAAGATGGGCGTGA
CGGTCGGGATGGAAAAGATGGAAAGGACGGCAGAGACGGCAAAGACGGAG
TCTGTTTATATCGAAAAGGCATATTCGTAATAAAgggagaaaaaggaaaa
gatggCAGAGATGGAAAGGATGGAAAAGACGGTGTGACAAAAAACTGGAA
AGAATGCGCTTGGAACAAAATTAACGAATACAAAGATAGTGGTGTTATAA
AGTCTTGCGATTTCAAAAAGGAATCTCGCTCTACTCACTTGAAAGTCTTC
GTATCTTCGGTTATGAGAATACACAATTGCAATAAGTGCTGTAAAAGATG
GTTTGTCACATTCGATGGACAGGAATGTGCACCTGTGCCGATAGACGGTA
TCGTTTATATGCATGCAGGTGCTGGAAACCGTATGAAAAATCTACATCGA
ACACGAGTTATCGCTGGACATTGTAaggtttcgaaaaaaaatcaaatcaa
tgtgGCCCTTAATGTTGGTGATTGTACTGGGTATCCCGGGGGCGACGCAT
CCACTGGGTGGAATTCAGCAACACGAATTTACATTGAAGAAGTTGACCAG
CCACAATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023253-exon-sc0000449-1491911889:110643..110947 | TCONS_00023253-exon-sc0000449-1491911889:110643..110947 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1510915933:110643..110947 | TCONS_00023253-exon-sc0000449-1510915933:110643..110947 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1575043694:110643..110947 | TCONS_00023253-exon-sc0000449-1575043694:110643..110947 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1491911889:111717..111938 | TCONS_00023253-exon-sc0000449-1491911889:111717..111938 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1510915933:111717..111938 | TCONS_00023253-exon-sc0000449-1510915933:111717..111938 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1575043694:111717..111938 | TCONS_00023253-exon-sc0000449-1575043694:111717..111938 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1491911889:112706..113105 | TCONS_00023253-exon-sc0000449-1491911889:112706..113105 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1510915933:112706..113105 | TCONS_00023253-exon-sc0000449-1510915933:112706..113105 | Clytia hemisphaerica | exon |
| TCONS_00023253-exon-sc0000449-1575043694:112706..113105 | TCONS_00023253-exon-sc0000449-1575043694:112706..113105 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000449 | supercontig | sc0000449:110643..113105 + |
Blast
BLAST of TCONS_00023253 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.007e-33 Identity = 60/141 (42.55%), Postives = 89/141 (63.12%), Query Frame = 3
Query: 462 TKNWKECAWNKINEYKDSGVIKSCDFKKESRSTHLKVFVSSVMRIHNCNKCCKRWFVTFDGQECA-PVPIDGIVYMHAGAG--NRMKNLHRTRVIAGHCKVSKKNQINVALNVGDCTGYPGGDASTGWNSATRIYIEEVDQ 875
T N+K+C+W+ +N D G I C F K ++ L+V S +R+ N CC+RW+ TF+G EC+ P+PI+ I+Y+ G+ N N+HRT + G C+ ++VA+ VG C+ YP GDASTGWNS +RI IEE+ +
Sbjct: 103 TPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
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