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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023255 ID=TCONS_00023255|Name=TCONS_00023255|organism=Clytia hemisphaerica|type=transcript|length=815bp
TTTTCGTGTCTAAAAGACTAGGTGTCGTTGTAAAAAGAATTATTAGATAc
acttttgtctttttaaatAAAGCGATTACCAAAATGGTTGCTATAAAAGA
AAATGTTCGCTTGTTCCAGCttaaacaaaacatcaaaatcgCTCAAGTCG
GAAGAGGTTATAAGAAAAGGATTTAAAACACCGTTCAGAAAGAGAGCGAG
AATTTGGACAACATGAAGACTGTATTACCGCTCTTTCTTCTATTTGTGAC
CGTGTTTGGTTGTACACAAGAAACGAAAAATGATTGTTGTAATTGTTGTA
AAGATGGACGTGTGACGGACGGGATGGAAAGGATGGAATCGGAAAGGATG
GAATCGGAAAAGACGGAATTGGAATTAACGGAAAAGATGGAAGAGATGGT
CGAAACGGGGTAGACGGAAAAAACGGAATGAATGGAAAACCGGGAAAAGA
CGGATTAAATGGAAAAGATGGAAAAGACGGAAAAGATGGAGAACCCGGCG
AAGACGGGAAAAATGGAATCGATGGAAAAGATGGCTTTAAGGGGACCAAT
GGAAAAGACGGAAAGAATGGAGAACCCGGTAAGGACGGAAAGGATGGATT
AGATGGAAAAGACGGAAAAGACGGAAAAGACGGAAAAGATGGAAAACACG
GAACGAACGAATTGTCGAAGAAAAACTGGAAAGAATGCGCTTGGAAAAAT
GTATATGATGGAAAAGACAATGGGGTGATAAAGCACTGTTCATTCAAAAA
GAGCTCAATCAATTCATACTTGAAAGTCTTCGTATCTTCGAATATGAGAA
TATACAACTGTAATC Run BLAST on NCBI transcript from alignment at sc0000449:118081..121127+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023255 ID=TCONS_00023255|Name=TCONS_00023255|organism=Clytia hemisphaerica|type=transcript|length=3047bp|location=Sequence derived from alignment at sc0000449:118081..121127+ (Clytia hemisphaerica)
TTTTCGTGTCTAAAAGACTAGGTGTCGTTGTAAAAAGAATTATTAGATAc
acttttgtctttttaaatAAAGCGATTACCAAAATGGTTGCTATAAAAGA
AAATGTTCGCTTGTTCCAGCttaaacaaaacatcaaaatcgCTCAAGTCG
GAAGAGGTTATAAGAAAAGGATTTAAAACACCGTTCAGAAAGAGAGCGAG
AATTTGGACAACATGAAGACTGTATTACCGCTCTTTCTTCTATTTGTGAC
CGTGTTTGGTTGTACACAAGAAACGAAAAATGTAAGTTAATAACATAATT
GGGCTTTTTTACACCGGTGTAGCGGATTATATTAACTCCTTGTAAAAGAT
AATTCCCCCAGTCATAATAAACTAGTAAAAAACACTCCTTTAGAGTGGAA
ATTTCTAAGGAAATTAATACTTccttagtaaataatgacttcctttttct
aaagaagtagcgagttaaaaaaactagtTGGATAAGACTCCCCGCCTCGA
ATGTCAAgcaaaagaagtcattgtattaCATCGCATCAACCCTAACTAAC
CCTAACACACTGATTTTTCTGGTATAGGCAGTATCAAACAGACAGGCATT
CTTAGATTCTAACTCGACCAATGAAATTAGGGAAAGTCTAAATTTGCTAG
GAAATGTTAACTCTAGGGAGTCAAAATTTACTAGCATTGAAAAATGTTTC
GTTGGGCTAACAGCTTAATGGCAAACAAAATAACCagaagcatttttgtt
ttttcattaaaaactactAAAGTTAACTAATATTAGGAGTTATAGAGNGC
GTGGCCAAAccccaaaaagggcaaaaaggaTTGAGTAACTCTAAAAAACT
TTGGAACTATATTTTTGCCCTAAAGTTTTGCATACCCACCCTCAGTTATC
TATCTTGACGAATCCTGAGAATATTTCCAAAAGTAAATTCGTTATTTCGT
AAATAATTATTTCGATGTCCgtaaaaaaaggggaaatataGACGGGCGAG
GGCTCATTCATAAATCGTGTAATTCAATTGAAATTCCCTCTAGAAATTGG
TATTCTTGATCCAAGAACAGTTTGAAGCCTTTCAGAGTCGAAATTCatgt
aaaagtttcaattttccgCTTTCAGATCCCTTTTCACGTCTTCTGAACTT
CACTGAGGTAGTGCTAAATTAAGGAAAGTGTTTTTATCACATAGAGCAAA
ATTGTCGGCAGTTCAACGAGAATTTACATTATTTCAGATATAAAAGAAGT
GCTTACAATTCACAGACATACATTTTGATGGATTTTCTGTTGTTCAAGAT
CATATAAATAAATGGTTGTCAAGTTTTCATATATTTAGGACGAAAAGTCA
CTCCCTCTAGGtaggaaaaacaaaatttttaagatttcaaaatttacacG
GACAAATCTTCACCTGAAGAGATAATGTGCCAAATTTAAGCAGGAAAGAA
TGTCTGTCGCCTTTATAGTCAAGCCTTCCTCCTTTTGCCTGCGTAAAGCC
TTTGGGCTACGCCAAAATTgtctaaaattatatttctcgaataaatgttt
tgatataCTTTATTTCTGTCCCTGAGAAGTGAATGTGCCAAATTTGCGCG
GAATTCAATCACTGTGTGTCTCATTTCCAACATAATTTGGGTAGTTGGGT
AGATggaaaaatattgatttgaGGGCACAAACTTTAGTCTACAAAAAGGC
TTCCCACATtttgtttcttcatttttgttcaaaaattctaTTTGACCTGT
CTACACTTATAATTTAGAcctcaaaaaaaattagtttgacactttttgaa
aaatcacccACTCCTACGTAGTATATAAGAAATGGGAAATCATAATAAAC
TAGTGTATTTTAACTGGGGAGTCATAATGAACTAGTTTATTATAACTGGA
CGGAGTTATGATTTAGGGCAGTTAAGTTTAACTGCGAAACCGGCTCTAAG
TTAACGCAGAACTTCTACTTCGACCCATAATCCGCAATTGTCGAGTTTTT
AGCTGACGCAAATGAGAATTTAAAGGACGCAAAGATTATTGGCCGGCTTT
AATTCTCCCACAGGTCAAAGAACGCCAATAACGACCAGCGTAAAATGCCT
AATAAAGTATTTCCAATTTTAGTCGGTCTAAATTCTTTCTGGTTGTCATT
AGTGTTTCTGGTAGTGCCACGCAGTCTACAAAACACAGTAATGAGAAAGT
TCTTCTAAAAATTGTTTAATCTCAAAAGCATCTTTTTCTTTAACACAACA
GGATTGTTGTAATTGTTGTAAAGATGGACGTGTGACGGACGGGATGGAAA
GGATGGAATCGGAAAGGATGGAATCGGAAAAGACGGAATTGGAATTAACG
GAAAAGATGGAAGAGATGGTCGAAACGGGGTAGACGGAAAAAACGGAATG
AATGGAAAACCGGGAAAAGACGGATTAAATGGAAAAGATGGAAAAGACGG
AAAAGATGGAGAACCCGGCGAAGACGGGAAAAATGGAATCGATGGAAAAG
ATGGCTTTAAGGGGACCAATGGAAAAGACGGAAAGAATGGAGAACCCGGT
AAGGACGGAAAGGATGGATTAGATGGAAAAGACGGAAAAGACGGAAAAGA
CGGAAAAGATGGAAAACACGGAACGAACGAATTGTCGAAGAAAAACTGGA
AAGAATGCGCTTGGAAAAATGTATATGATGGAAAAGACAATGGGGTGATA
AAGGTAGGTAACAAGGATTTAAGTTTCAGGCGAAGATCACCCCTTTTAAA
TGTCACATTGAAAATTTCGTTTTCCGGGAAGACTTCGACCAAAAAAGAAT
AAACGTTCGATTGTTTTTATGGGGTCCACGGTCAGCCGCCTTAATAAATA
GAAGAAGCAAGTATTCGGAACAGGAAATCCGGTTTGAGACGTTGATGTCT
TAGAAAACTCGACCGTTTCTCTGgagataaaatgatagaaattaaaaaaa
cccTTCTATTTTCAGCACTGTTCATTCAAAAAGAGCTCAATCAATTCATA
CTTGAAAGTCTTCGTATCTTCGAATATGAGAATATACAACTGTAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023255-exon-sc0000449-1491911889:118081..118361 | TCONS_00023255-exon-sc0000449-1491911889:118081..118361 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1510915933:118081..118361 | TCONS_00023255-exon-sc0000449-1510915933:118081..118361 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1575043694:118081..118361 | TCONS_00023255-exon-sc0000449-1575043694:118081..118361 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1491911889:120332..120783 | TCONS_00023255-exon-sc0000449-1491911889:120332..120783 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1510915933:120332..120783 | TCONS_00023255-exon-sc0000449-1510915933:120332..120783 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1575043694:120332..120783 | TCONS_00023255-exon-sc0000449-1575043694:120332..120783 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1491911889:121046..121127 | TCONS_00023255-exon-sc0000449-1491911889:121046..121127 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1510915933:121046..121127 | TCONS_00023255-exon-sc0000449-1510915933:121046..121127 | Clytia hemisphaerica | exon |
| TCONS_00023255-exon-sc0000449-1575043694:121046..121127 | TCONS_00023255-exon-sc0000449-1575043694:121046..121127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000449 | supercontig | sc0000449:118081..121127 + |
Blast
The following BLAST results are available for this feature:
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