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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023265 ID=TCONS_00023265|Name=TCONS_00023265|organism=Clytia hemisphaerica|type=transcript|length=793bp tgtaggAATTGATAAAGTCATCATGATATTTCAATTGTTCATAGCCATTA GTTTGGCATCAGCTTGTTTTGGTGATATTCTTGACTGTGGTAATGGTTCC AAACTATATCgtgaaggatgtttcaccgtgaATGGCAATGCAAAGAAACA GTTGGTCATGAGAAGTCCAATCTATGTAGTTGGATCAGTCACGAAATTGG TTTGTGACTGTGCAGCAAAAGCTAAAGgaaaagccatttttttaacCAAC TTTGAGGAAtgttataaaacaaaaattggaagcagTGCAGTGTTAGGTGG TCAGGCAACTGACGACAAATGTATTAACTCCTACTATACAAGTTGTCAAA ATGGCCAAGACTGTATCGGTGTTGCAGGTTATGTGTTCGCTTACAAAGTT CCAGTTGATGGAGGATGGAGCTCTTGGTCAACATTTGGACCTTGTAGCCG CCGCTGTGGTCCAGGGCGCCGAAGGTCCACAAGAAGATGCTTTAATCCAG AACCTAAATACGGTGGAAAGCAATGTTCAGGATCAAGTGTCAGATATAGC CTTTGCAATAACGGAGCTTGTATTCCAGattTAAGAAACCAAGGACAAAA TTGTTGGAAAAAACCTACCTATTTCTGTGGTAAAAAAGGTCTTTGCAGTC GAAAAGGATGGGGTCGATGGCAAGACGCTGCATTCCCCTGCGTTAATAGG CACTGTTGTACTGAGCCAGCTCTTGTTAAGAACCTAGGTTCAAATTGCTG GTCGAAGTGTGGTAGAAAGGGCGGTTACTGTCCTGGGNTATTT Run BLAST on NCBI transcript from alignment at sc0000449:61179..69662- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023265 ID=TCONS_00023265|Name=TCONS_00023265|organism=Clytia hemisphaerica|type=transcript|length=8484bp|location=Sequence derived from alignment at sc0000449:61179..69662- (Clytia hemisphaerica) TGTAGGAATTGATAAAGTCATCATGATATTTCAATTGTTCATAGCCATTA
GTTTGGCATCAGCTTGTTTTGGTGATATTCTTGGTAAGGACATTTTTTTG
GACCTTCCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCC
GTTCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATT
AGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAAT
GTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGGCAAATTTGGGCC
AAAAACTGCCTAAAAATAGGGTGTTCTGGACTTTGTGCAAAATCCTGTCA
TTACTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAA
ATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGGCAAATTTGGG
CCAAAAACTGCCTAAAAATAGGGTGTTCTGGACTTTGTGCAAAATCCTGT
CATTACTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTA
AAATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGGCAAATTTG
GGCCAAAAACTGCCTAAAAATAGGGTGTTCTGGACTTTGTGCAAAATCCT
GTCATTACTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCC
TAAAATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGGCAAATT
TGGGCCAAAAACTGCCTAAAAATAGGGTGTTCTGGACTTTGTGCAAAATC
CTGTCATTACTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATG
CCTAAAATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGGCAAA
TTTGGGCCAAAAACTGCCTAAAAATAGGGTGTTCTGGACTTTGTGCAAAA
TCCTGTCATTACTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAA
TGCCTAAAATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGGCA
AATTTGGGCCAAAAACTGCCTAAAAATAGGGTGTTCTGGACTTTGTGCAA
AATCCTGTCATTACTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGC
AATGCCTAAAATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTCGGG
CAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGACTTTGTGC
AAAATCCTATCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGGGCA
AGATTCTCTAAAGAATTCCTGAAGTGGTTTTTCCTGGAAAATTCTTATTC
GCCTTAAAAGATGGATTTTCGTATTTTGGGGAAATTCCCTTTAACCAAAT
AAGAAAATATAGCTTTTCTCAATGTTGACTCATAATTGTTTTCTGATTTT
GTGCACAATGATGCAAAATGGCATTGCCCAAAATGTGAAGGAGCCAGATT
TTCAAGGAAATTTTTTTTGGGCAAATTTGGGCCAAAAACAGCTTAAAAGG
TTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATTTGGGGAAATTCCT
TTTTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTT
TTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTT
GCTTGTTTTATTTCATTTTCCATCATAAAAATCGGCTTCCCAAAATAAGA
TAGGGTTCTGCCGCCTAAAAACAAAATGTTAAAAACAGTTAAACTAATGA
AAAGTTCGAATAATAAATAATTTTAGCAAACCTAATTTTGACCAATTTCG
TCTATTCTCGCTAATTTCGAAAAAATTAGGCCCCTAAATGGCCTAAATGT
ATATGCTACAATGTTCAACGCACAAAACATATCATATTATGAAGTGCAAT
TTTTTTCCCTTTGACGATTTCGCTGTCAATTTTTTTAAGAAGGAAAAACT
GTGTCTACCCATGGTTGCAGTGAGGCAATATGTTAGCATGGGAGAGGGAA
AAAAGTATAGGACTAAATAAGTTACAGTTTGTACTAATCTTTCCCGAGAG
TGTACTAGGGTTGGAGAAGGTAGGGTCCGGACATCTGAAAACTGACTCCT
AGAGCGACTAATCATTTAAATAAAAAACGTTCGTATCTTTTGCAGGCTAC
TTCTTAACTTAATATATGAGAAATGTTATGTTTACCGTTATTACTTTGAA
TAAACATTTATTGGCTCTTATAGTTTTTTATGAAGGAGGGCAGGCAGCGT
TAGTTTGAGGAGGGAGAGGAATACCAGGAAATTTAATATTTCAAAATTCT
GGGAATTTATAGAGAATGCCACATAGTGGCGTTTCAAGATATGACATTTT
AAACTGGTAAAAACTTTTAGAAATATAAAATTCCTAAATTCTGGAAATTT
AGAGAATGTCACATAGTGGCGTTTCCAAATTTGAAAAATGAGATATTTCC
ATTGTAGTAGGGGGAAATTTGTAAAATCGCTCGATTTTTTTAGTCAAAGC
ACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACT
TGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGATTCCCCTACCCCTTAGCTTTCCAAAAAT
GTATAACAAGTGCTTTGACTAAAAAAGTCGAGCGACCTCAAAAAAACGAA
CAAATTTCCCCCTACTATTGCTCCGGAAAGTTCTTAAAATATGACATTTC
CAGTTTTTTTTTGGTATTTCCAATGTACTGGAAATCCTGTCTTTTCGAAG
TACATTAAAAGAAAGTTTGGCGAGAATTTTATTTGGTGGATGGCTGAAAA
AGTTATTTTCTTAGGAAATTTAATTTGGCGAATGACGGATTTTTAAATCT
GAAATCAGGGTAAAAACATTGATATCGGGCGTTGTGAATTGTGAAAAATC
GGACATTAAAAGAAAAGAATTAAATTTGGCAGGAATTTTATTTGGTGGAT
GGCCGAAAAACTTTAATTTAGCGGATTTCAAATTTTCTTCCGGCCATAAT
TTCCTTCCTTTAATTTAATCTCTATCTCCAATGCTCTTTAGACTGTGGTA
ATGGTTCCAAACTATATCGTGAAGGATGTTTCACCGTGAATGGCAATGCA
AAGAAACAGTTGGTCATGAGAAGTCCAATCTATGTAGTTGGATCAGTCAC
GAAGTAAATTCTATTTGTTTCTTTGAATTTCGTCCGACATGCTTTGGTTC
ACAATTTTCAAACTACTCAAAATCAGGGTATCCTAAAGATAATCCTAAAG
AAATTAATATTCCTATATAATAAAGCTTAGTTTTTGACGGCTAAAAATTG
ATATATCGTGTGTCCAAACGTAAATTCATCATATTTTGAAGGTATGTATT
GATTCACCAGGCTATAGTTTAGATTTCCCAGCTTACCTTAAATATCACAG
CAACGTTTATAGATTATAAGTAGTCTTACTGGCGAATCAAAAATTAACTC
CGGCGAATTCTAAATTCTTGGCTGGCGAATCGTATTTTTCTCGTATCTTA
AAAGGGCGAAATATTCTGCTCATCGGGCCTACTCTCGGGTACCTAATAGC
CAGGGGGTTGGAATAAGCGGGGAGGGGGTTGTCACAAAACTTAATAAGCG
GGAAGGGTTGGAATAAAAAATAAACGCTAATACAGCAGAGAATAAGGGCA
AAAGAGGGAACTTTCAAAAACATTTTCCCATAAATTAATAAGCAGGGGGT
TGGAATAAGAATGTCCTGGGTGGAAAAATTTCGAAAAATAAATTAGCGGG
GGGGGGGGCAGCTATTAGGTACTCGAGAGTGAATGAGCTTTAACAAAAGG
TTGAGCGCCTTCTGTATAAACTAATTGCTCTAGTATTCAAGGCAATAAAA
GTTCACTTTTGGTTCTCCAAAGTGATTTTTTTATTAGATTTTTTAATGTT
TCATTTTTGTTTACGCAAAGCTCCAGGTAGGTGCCCAGTCACAGCATATC
CACAATCCACAGATCGTTAAAGGAATAATTGGATAGTTGGTGGTCCTGAG
TAATTTCATTATGTTTTGTTTTTCATTTCTAGATTGGTTTGTGACTGTGC
AGCAAAAGCTAAAGGAAAAGCCATTTTTTTAACCAACTTTGAGGAATGTT
ATAAAACAAAAATTGGAAGCAGTGCAGTGTTAGGTGGTCAGGCAACTGAC
GACAAATGTATTAACTCCTACTATACAAGTTGTCAAAATGGCCAAGACTG
TATCGGTGTTGCAGGTTATGTGTTCGCTTACAAAGTTCCAGGTAGGTGTC
CAGTAACGTTAAAGGAATAATCGGATGGCGTACTGTTGAAAGCTTCTGTA
GTACACCCCTGTCTCACAGCCCCGGTGGAACTTCTTTCCTCAGTGTGAAT
AAAAACTGCTATCGAAATCCCAATGGGGAGAGAAAGTCTATTGTTCCAAG
ATTAAAAAATCCAATGGGGATGGTTTTGGAGTGCAATTAGACTTTGAATT
TCTAATGGGGATGAAGTCAAAATAAATATCCCAGTGGGGTGGAAATTTCA
GGGTATTTTCCCACCGGGGACAACATTTTAATTTCCCAGTGGGGCTGGGG
TCCCCAGTGGGTCTGTTGTCGTCAAGAGTAAAACTTCCTTTTTTTCTTTA
ACTTTGCAATTGACCTCTCTAAAGTCTATTCACGATAAGTGTGCACTCTT
TTTTCTTTTACCTATAACTTTTGAAGGAATTCTTCAATCTTAATAAATTT
GGTATCATTGGAAAGATATCAGTGAGTGGAACAATTTGAAATAAAGAAAT
CTTTAAAAAATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAATAAA
GATCTTTTAGAAAAGTGCTATAACTATCATTTTCACTGAAGTGAATCCTT
GATCATCGAACGTTATCACTGTGAAAAAAATTCTCAAAATAATCATTTTG
TCAAAAGATATCAAACAAAGTTATAAGCAGATTGACGTCTAAAAATGCTG
TTTTCTGCTGTTTTCTGCTGTTTTTTGGGGTCAATCACTTATTAACTTTG
TATCATAACTTTATATTGAATGAATATTTTAGTGAAATTTCGTCTTCACA
CTGATTACCTCCTAAGATCAAAGAATCTCTCCAGTGAAAATGAAAGTCAT
AGCCTTCTTCTTCATTTTCATCTTCGTTTTTAGAATTTTTTCATAGATTT
TTTTATTTCAAATTGTTTCACTCACTGATATCTTTTCAACGATACCAAAT
TTATAAAGATTGAAGAACTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGA
GTGCACACTTATCGTGAATATTTTTTTAATTCGACGTTTTTCTATTTGTT
ATACGCTCATACGCTCCATTATTTGATATTGAAAGTCACCGTTAACAAGA
AATTCTCATAAACGACGCTCAACTATTTAATACGCCCCCTCCCAGCTGGC
ACACAACGTTCTTTCAACGTCAATCTGATGTTCACAACGTCCATCTAACG
TTAGATGAACGTTGAGACAACGTTGTGTGTCATCTGGGCTTATAGTTCTG
CTGAAACCATTTTGAGGATTTTTTTAGAAAATAGAACAACCTAAAATTTC
TTTAAAAAATACATTCGCGTTGCTTTTAGTTGATGGAGGATGGAGCTCTT
GGTCAACATTTGGACCTTGTAGCCGCCGCTGTGGTCCAGGGCGCCGAAGG
TCCACAAGAAGATGCTTTAATCCAGAACCTAAATACGGTGGAAAGCAATG
TTCAGGATCAAGTGTCAGATATAGCCTTTGCAATAACGGAGCTTGTATTC
CAGGTATTCTTTCAGAAATTCTTTAAAATATGTAGTAAATGATGATATTT
TGTTGATGCGATGCTTTTATCCATCAATAGAGTGATTAACCAACCGAAGT
CAGAAGCGTGATATCATAGTTGAAGTAGTGAAAATTATTGTTTCAACACT
GACAGTTTCATGTCTTATTCAAACATTCCTGAGAATAACTTTCGGGATAA
GATACAAAAATAAATTCAAATAGGGTCTCTCGCTTAACAGGACCCTTTTT
GAACGCGGTCTTGTATTTGTACGGTACAATATAAAATACAGCATTTATGT
ATGCGTTTTTATATCTCAAGCAGACGACGACATTGAGAAAAGTTACCAAA
ATCTGATTAAAAGTAAAGTCTGTCTCAATATAGTTTGCAGTGGAGACAAA
AAATGATGTTACTTTTGATAGAGTTCGAATTAAAAAACAGTATTGTGCTC
GCTTGAAAGATAATCCAGAGTGGAATATTTGCAAAAAAGAAAAATCTTTA
GAAAATGGAAAAAAGAAGATGAAAAAAGAAGAATAATAAAATCAACTTCC
TATAGATTAATGATATGATCTTCATTTTTATATCAGAGGTTCTTCAATCT
TAGAACGTCATAAATGGGAAAGAAATCAAAGAATATTTGTTTAGTCAAAA
AATACAACTTAAAACTTTGCTTTGGTCGAAGGGCACTTTTTTGTTGTTTT
TAGGTGGTTTTCGAAAAGTTAAGATCAATCTATCTTTGATCTAGTCTAGC
TTGGAAAGCTTGCGAAAGCTTGTAATAAGTTAAACAAGATAGGGCACTCT
AATTTGTTTAACGTTCTCAAACTTCAAACTTTTAGAAGTCTTGTCGAGCC
CATTCTTCTTTATGGCTCAGAGACTTGGACTATGACAAAAACCATGGTGA
AGAGCCTGGTGGCTGTTATACAAACCTTTTGAAAATAATACAGAATCTTG
ATTGGCGCGACCACCCAACCCTTCACGAGATCTATCATGGACTCCCAAAA
ATTCCTTCTGTCTTGACAAGCAGCGTGCTCTCTTTCTCAGGTCAATGTTT
CTGTGCACAAAACGAAATTGTATCTGAAATCCTACTTCTGTGTCCTGCTG
GCCCTGGGCGCTCGAGAAAGCATAAATTTCTTAATATTTTGAAACGAAAA
ACAGGAATAGAGATTTAGGAACTGAGTACTGCAATGGCTGATCGCAAACT
GTGGATTGAGGGTTATTGTTTGTTTCCGACTTAGGTGATGATGAGGAGGA
TGCGTTTTTAGCCAATCAGATTGCTCATATTTCTCATGTTGACGATAAAG
GATGGAATATTCAAAACGTTGTACTTGTCTTTGTCTTTTGGTGTTTTTTT
GAAAATTTATACCCCTGTCTTTGTGCCAAATACCCAGATTGTTTTCAAAA
TAAAAATATACCACCTTTCTTTCTTTTTAGATTTAAGAAACCAAGGACAA
AATTGTTGGAAAAAACCTACCTATTTCTGTGGTAAAAAAGGTCTTTGCAG
TCGAAAAGGATGGGGTCGATGGCAAGACGCTGCATTCCCCTGCGTTAATA
GGCACTGTTGTACTGAGCCAGCTCTTGTTAAGAACCTAGGTAAGATTAAT
TTTTCATTGACCTTAAAACTATTAGGAGTTTTAAGAATTTTGCAGAAATT
TAGATATTCCCTTCATTTAAAAACAGGGAATATAATAGCTAGTCAGTGGA
CACAAGCCGTCGAATTTGATTGGTCTAGAAAAAAGTTATTTTATAAAAGT
TGAAGTTACCTGCAAAAATAATATGTAATCCAAAAGAAGGTCCTGTTAAC
TTGCATGAGAAATGAGGCGCCAAAATTCTGCATCTTTACACTACAGTTCT
GTATTTTCATAACAAAATTTCATTTAAGGTTCAAATTGCTGGTCGAAGTG
TGGTAGAAAGGGCGGTTACTGTCCTGGGNTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00023265-exon-sc0000449-1575043694:69580..69662 | TCONS_00023265-exon-sc0000449-1575043694:69580..69662 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1575043694:65710..65821 | TCONS_00023265-exon-sc0000449-1575043694:65710..65821 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1575043694:64622..64830 | TCONS_00023265-exon-sc0000449-1575043694:64622..64830 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1575043694:63110..63283 | TCONS_00023265-exon-sc0000449-1575043694:63110..63283 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1575043694:61524..61682 | TCONS_00023265-exon-sc0000449-1575043694:61524..61682 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1575043694:61179..61234 | TCONS_00023265-exon-sc0000449-1575043694:61179..61234 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1510915933:69580..69662 | TCONS_00023265-exon-sc0000449-1510915933:69580..69662 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1510915933:65710..65821 | TCONS_00023265-exon-sc0000449-1510915933:65710..65821 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1510915933:64622..64830 | TCONS_00023265-exon-sc0000449-1510915933:64622..64830 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1510915933:63110..63283 | TCONS_00023265-exon-sc0000449-1510915933:63110..63283 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1510915933:61524..61682 | TCONS_00023265-exon-sc0000449-1510915933:61524..61682 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1510915933:61179..61234 | TCONS_00023265-exon-sc0000449-1510915933:61179..61234 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1491911889:69580..69662 | TCONS_00023265-exon-sc0000449-1491911889:69580..69662 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1491911889:65710..65821 | TCONS_00023265-exon-sc0000449-1491911889:65710..65821 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1491911889:64622..64830 | TCONS_00023265-exon-sc0000449-1491911889:64622..64830 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1491911889:63110..63283 | TCONS_00023265-exon-sc0000449-1491911889:63110..63283 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1491911889:61524..61682 | TCONS_00023265-exon-sc0000449-1491911889:61524..61682 | Clytia hemisphaerica | exon |
TCONS_00023265-exon-sc0000449-1491911889:61179..61234 | TCONS_00023265-exon-sc0000449-1491911889:61179..61234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000449 | supercontig | sc0000449:61179..69662 - |
Blast
The following BLAST results are available for this feature:
|