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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023266 ID=TCONS_00023266|Name=TCONS_00023266|organism=Clytia hemisphaerica|type=transcript|length=3414bpRun BLAST on NCBI protein sequence of TCONS_00023266-protein >TCONS_00023266-protein ID=TCONS_00023266-protein|Name=TCONS_00023266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1037bp SDELKKLSESNKEIWMELDDFFECFNFLWIFHRPKQYNKNVIDLKNFEAKRun BLAST on NCBI transcript from alignment at sc0000449:71386..90220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023266 ID=TCONS_00023266|Name=TCONS_00023266|organism=Clytia hemisphaerica|type=transcript|length=18835bp|location=Sequence derived from alignment at sc0000449:71386..90220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000449:71386..90220- >TCONS_00023266 ID=TCONS_00023266|Name=TCONS_00023266|organism=Clytia hemisphaerica|type=CDS|length=71622bp|location=Sequence derived from alignment at sc0000449:71386..90220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023266 vs. Swiss-Prot (Human)
Match: ADGB (Androglobin OS=Homo sapiens GN=ADGB PE=2 SV=3) HSP 1 Score: 392.889 bits (1008), Expect = 1.286e-114 Identity = 319/1081 (29.51%), Postives = 495/1081 (45.79%), Query Frame = 2
Query: 32 NKEIWMELDDFFECFNFLWIFHRPKQYNKNVIDLKNFEAKNERGKKSSGHNLVTAGRSALLSPTSFLYGGNASSDTPPPYILIDCLKEVELMITLQSFSRWFDPNLSINYVKDGQIDKDILSQVPKPVSGSLVIEPYSWKKVAASSPLLKIRTTGVKAVALTLPPGRHVLRLMVTAPLGFNVHLSSLHPFHYGDENIIMQELKNESQRFIEHSMEVVQQIANVMQTFISPANCNPTKLLLGTETKSNQTRLEHFEALFESFGAIMKKELGSNYNQQATKFALEALKHQAYFHLMKFHKRSTKRPTSLPALSATQQTFTRDDCSFKRTSLP---SIHFKLKNNHRD------KAAAMFQALFRGFVVRKLKQACTPGSAENVSCVEQLTKVLQLVTSNCEQISISTYRHMFTMKPSLFQLFPFHSDDWNKISYMDYTGTYPEQQADSWFVVCRDIFYVEESFLVLPKFYCNVPGCHLIVINNDTCCRVKTVFKRVVPQVLQKNKTGYTFVVTAYT-ENVVPAGKFKLRLIGERNPLPGSSKEGTINSSFFVNETRDYYIPNKYDRIFRHSVSTTEDVLSSIQFTTSKDEAHVKVQVLDQGEVVYESVGKKYVTIPALIFCKNVIQGEEXXXXXXXXXXXXXXXXXXXXXXNKRPNSSSRKSASPEKNKSKILEPKIPETIEET--------------KIHKYVIQGFVLKDSWPLTKKQWDFIENPKNF---------------------------EDEDQSVESKPDNSGKGSAGKTRGSKSNSKDKGVRSRPESQTQN--LFDITQAHWTLKVVVDSNMETAITIKRDTEREDEIKAIKNAWETHQPGRAAKALQSRAKYL------------------------ESHTVAR---EP--------ETNETEATEGNVGDLNKDKETKETRD-RESIKTEG------GEDSKNETTEIEVTPSTPSLAEVESCTLYNTRPPKDTDPILKQFDLTPFLRSSGKPVLLDATKEEEIRA-ELEQRFHKYHEFREKVLALREEDRVSRNNAKERQIEVYEDMQMELDKARGTIYKAREAYRVQFL 2986
+KEIW++ +DF CF ++IFH+P Y N F+ ER S+ Y+ +D LK +EL++ + RW + G + KD P G L E +SWK + S +LKI T KA + LP GRH+L +P+G ++H+ S+ F GDE++++ + ES RF E S+ +++ I NV+ F L K QT H+ F KEL + + + + H + + LMK + + P A A + S + SL + + + + ++ AA QA++RG VR L +A P + EN+S + L KV ++ N EQ ++S R MF K + +P + D+ KI++ DYT TY EQ +SWF+V R+ F V + +++PK Y +P C L ++NNDT +V VF++VVP + KNK GYTFV A+T + V A ++KLRLIG PLP S++ N SF + E RDYYIPN +FR+SV ++IQ TSK +A +K+QVL+ E + S GK IPA F K+ +G S+ S ++ K+ +KS + S I + +P EET + +KY+IQ VL +SWPLT+ Q F++ K+ E + SV SK + KG + K+ + + R P+ T + D + +W L++V + N +K+DTER DEI+A+K AWET +PGRA KA Q+R YL E T AR EP E+ E T K + TK RD +S +E G++ + ++T E + P S T+ T P+ L+ DL+ ++R + LL + + +A + + H++ + R +VL++R D+ R K+ +++Y++MQ LD+AR I+ RE YR + L
Sbjct: 628 SKEIWLDFEDFCVCFQNIYIFHKPSSYCLN-FQKSEFKFSEER--------------------VSY-------------YLFVDSLKPIELLVCFSALVRWGE---------YGALTKD----SPPIEPGLLTAETFSWKSLKPGSLVLKIHTYATKATVVRLPVGRHMLLFNAYSPVGHSIHICSMVSFVIGDEHVVLPNFEPESCRFTEQSLLIMKAIGNVIANFKDKGK-------LSAALKDLQT--AHYPVPFHD------KELTAQHFR---------VFHLSLWRLMKKVQITKPPPNFKFAFRAMVLDLELLNSSLEEVSLVEWLDVKYCMPTSDKEYSAEEVAAAIKIQAMWRGTYVRLLMKARIPDTKENISVADTLQKVWAVLEMNLEQYAVSLLRLMFKSKCKSLESYPCYQDEETKIAFADYTVTYQEQPPNSWFIVFRETFLVHQDMILVPKVYTTLPICILHIVNNDTMEQVPKVFQKVVPYLYTKNKKGYTFVAEAFTGDTYVAASRWKLRLIGSSAPLPCLSRDSPCN-SFAIKEIRDYYIPNDKKILFRYSVKVLTPQPATIQVRTSKPDAFIKLQVLENEETMVSSTGKGQAIIPAFHFLKSE-KGLSSQSSKHILSFHSASKKEQEVYVKKKAAQGIQKSPK-GRAVSAIQDIGLPLVEEETTSTPTREDSSSTPLQNYKYIIQCSVLYNSWPLTESQLTFVQALKDLKKSNTKAYGERHEELINLGSPDSHTISEGQKSSVTSK--TTRKGKEKSSEKEKTAKEKQAPRFEPQISTVHPQQEDPNKPYWILRLVTEHNESELFEVKKDTERADEIRAMKQAWETTEPGRAIKASQARLHYLSGFIKKTSDAESPPISESQTKPKEEVETAARGVKEPNSKNSAGSESKEMTQTGSGSAVWKKWQLTKGLRDVAKSTSSESGGVSSPGKEEREQSTRKENIQTGP---RTRSPTILETS-PRLIRKALEFMDLSQYVRKTDTDPLLQTDELNQQQAMQKAEEIHQFRQHRTRVLSIRNIDQEERLKLKDEVLDMYKEMQDSLDEARQKIFDIREEYRNKLL 1628 The following BLAST results are available for this feature:
BLAST of TCONS_00023266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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