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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023273 ID=TCONS_00023273|Name=TCONS_00023273|organism=Clytia hemisphaerica|type=transcript|length=3095bpRun BLAST on NCBI protein sequence of TCONS_00023273-protein >TCONS_00023273-protein ID=TCONS_00023273-protein|Name=TCONS_00023273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=651bp MASKGPKKKESKDQVPSTTKELSQSSNTSQVNDDKTSAKKKSPIPLWPEWRun BLAST on NCBI transcript from alignment at sc0000449:153426..179967- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023273 ID=TCONS_00023273|Name=TCONS_00023273|organism=Clytia hemisphaerica|type=transcript|length=26542bp|location=Sequence derived from alignment at sc0000449:153426..179967- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000449:153426..179967- >TCONS_00023273 ID=TCONS_00023273|Name=TCONS_00023273|organism=Clytia hemisphaerica|type=CDS|length=23472bp|location=Sequence derived from alignment at sc0000449:153426..179967- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023273 vs. Swiss-Prot (Human)
Match: ADGB (Androglobin OS=Homo sapiens GN=ADGB PE=2 SV=3) HSP 1 Score: 201.445 bits (511), Expect = 1.659e-52 Identity = 146/353 (41.36%), Postives = 193/353 (54.67%), Query Frame = 3
Query: 129 MASKGPKKKE------------SKDQVPSTTKELSQSSNTSQVNDDKTSAKKKSPIPLWPEWTDQEIANEKWDLAKKEKER---GRSPNAAAHYFDDPEGLIDLPITLKTKVHAWKRXXXXXXXXXXXXXXXXSNTSCSQLDILTPNEHXXXXXXXXXXXXXXTTLHQFFMPNRDSPAFCPSKFKTNLNIKEPPXXXXXXXXXXXXXXXXXXXEELPWKPWDLIWPKESTKPGSMPLMNSSGKYVVKLYWMGCYRKITIDDTIPCDVDMKPLLPFTTNGNELWPMILAKALIKVASLDYFGGREGSEMGEVNFIHCLTGWMPELIPLDGVYSDKIWKLLLQVLPNWKLPQPPS 1142
MASK KKKE SKD P + QS +T Q KK PLWPEW++ +I +EKWD K KE+ G+SP H+F+DPEG I+LP +LK +++WKRP DI+ + VV D+ + NEH++CSE++ I+S I + + F + + FK EPP LPWKPW+ I+ G MPL NS GKYVVKLYWMGC+RKITIDD +P D D LLP TT ELWPM+L+KA+IK+A++D + E+GE IH LTGW+PE+I L Y DK+W+LL ++LP +KL S
Sbjct: 1 MASKQTKKKEVHRINSAHGSDKSKDFYPFGSN--VQSGSTEQ---------KKGKFPLWPEWSEADINSEKWDAGKGAKEKDKTGKSP--VFHFFEDPEGKIELPPSLK--IYSWKRPQDILFSQTPVVVKNEIT-----FDLFSANEHLLCSELMRWIISEIYAVWKIF-----NGGILSNYFKGTSG--EPPL--------------------LPWKPWEHIYSLCKAVKGHMPLFNSYGKYVVKLYWMGCWRKITIDDFLPFDEDNNLLLPATTYEFELWPMLLSKAIIKLANIDIHVA-DRRELGEFTVIHALTGWLPEVISLHPGYMDKVWELLKEILPEFKLSDEAS 305 The following BLAST results are available for this feature:
BLAST of TCONS_00023273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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